Wall clock time and date at job start Tue Mar 31 2020 12:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 O 1.42906 * 109.47019 * 142.46625 * 3 2 1 5 5 C 1.42900 * 113.99607 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46754 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47051 * 65.00026 * 6 5 4 8 8 C 1.34782 * 120.00406 * 179.97438 * 7 6 5 9 9 O 1.21591 * 119.99323 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00403 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99933 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47005 * 179.97438 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.97666 * 12 11 10 14 14 C 1.38280 * 120.13484 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.07150 * 359.67534 * 14 13 12 16 16 C 1.38861 * 119.92830 * 0.59673 * 15 14 13 17 17 O 1.35751 * 120.06597 * 179.69892 * 16 15 14 18 18 C 1.34829 * 117.00376 * 354.17384 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38657 * 120.00083 * 185.03464 * 18 17 16 21 21 N 1.31555 * 119.99797 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99748 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47410 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47495 * 329.99577 * 22 20 18 26 26 C 1.38073 * 119.96947 * 89.99513 * 12 11 10 27 27 H 4.38450 * 5.44445 * 179.97438 * 4 1 2 28 28 H 1.08998 * 109.47201 * 22.46688 * 3 2 1 29 29 H 1.08996 * 109.47478 * 262.46500 * 3 2 1 30 30 H 1.08997 * 109.47372 * 60.00048 * 5 4 3 31 31 H 1.08998 * 109.47232 * 299.99413 * 5 4 3 32 32 H 1.09001 * 109.47494 * 305.00005 * 6 5 4 33 33 H 1.09005 * 109.47313 * 184.99482 * 6 5 4 34 34 H 0.97009 * 120.00113 * 359.97438 * 7 6 5 35 35 H 0.97001 * 119.99467 * 359.97438 * 10 8 7 36 36 H 1.08993 * 109.47130 * 59.99768 * 11 10 8 37 37 H 1.09003 * 109.47080 * 299.99631 * 11 10 8 38 38 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 39 39 H 1.08007 * 119.96121 * 179.97438 * 14 13 12 40 40 H 1.08001 * 120.03709 * 180.32387 * 15 14 13 41 41 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 42 42 H 1.08001 * 120.03594 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.0693 -0.8208 5 6 4.5463 1.1597 -0.8891 6 6 4.9403 2.3318 -1.7903 7 7 4.5011 3.5879 -1.1776 8 6 4.7420 4.7604 -1.7972 9 8 5.3243 4.7754 -2.8645 10 7 4.3384 5.9160 -1.2334 11 6 4.5998 7.1903 -1.9072 12 6 4.0512 8.3205 -1.0749 13 6 2.7507 8.7513 -1.2662 14 6 2.2438 9.7884 -0.5048 15 6 3.0330 10.3929 0.4541 16 6 4.3407 9.9664 0.6446 17 8 5.1207 10.5627 1.5821 18 6 4.6080 11.6400 2.2100 19 1 3.5892 11.9428 2.0182 20 6 5.3887 12.3593 3.1021 21 7 4.8885 13.4108 3.7143 22 14 7.1510 11.8361 3.4333 23 1 8.0581 12.5172 2.4750 24 1 7.5258 12.2099 4.8208 25 1 7.2702 10.3652 3.2677 26 6 4.8472 8.9251 -0.1224 27 1 -1.0502 -0.0004 0.0001 28 1 3.0098 -0.9488 -0.3927 29 1 3.0093 0.1356 1.0187 30 1 4.9499 0.2343 -1.2999 31 1 4.9486 1.3190 0.1113 32 1 4.4649 2.2169 -2.7644 33 1 6.0232 2.3470 -1.9139 34 1 4.0369 3.5759 -0.3259 35 1 3.8742 5.9039 -0.3817 36 1 4.1159 7.1908 -2.8839 37 1 5.6745 7.3205 -2.0341 38 1 2.1299 8.2768 -2.0118 39 1 1.2281 10.1228 -0.6568 40 1 2.6349 11.1993 1.0520 41 1 5.4345 13.9138 4.3386 42 1 5.8627 8.5888 0.0260 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116569731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:47 Heat of formation + Delta-G solvation = -17.937374 kcal Electronic energy + Delta-G solvation = -24567.359322 eV Core-core repulsion = 20708.402774 eV Total energy + Delta-G solvation = -3858.956548 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.06815 -39.25082 -38.62234 -37.02091 -35.15324 -34.41999 -33.52395 -32.44145 -31.08313 -29.76799 -29.23104 -27.18172 -25.81028 -25.03545 -22.93075 -21.82891 -20.98918 -20.68872 -18.99828 -18.53864 -17.75022 -17.39983 -17.12857 -16.80265 -16.01853 -15.62148 -15.35821 -15.26128 -14.87748 -14.53059 -14.24837 -14.05967 -13.86236 -13.62655 -13.39371 -13.06609 -12.78265 -12.59279 -12.55475 -12.17579 -12.05355 -11.86212 -11.44912 -11.00299 -10.95981 -10.92761 -10.88126 -10.75398 -10.25913 -10.19864 -10.07135 -9.46248 -9.32937 -8.93018 -8.79264 -8.33345 -7.47657 -6.46370 -4.13657 1.78948 2.04640 2.15807 2.37381 2.81603 3.18927 3.23137 3.23867 3.36869 3.40693 4.04041 4.19552 4.21561 4.48898 4.52045 4.67720 4.68456 4.71555 4.85684 4.91561 5.03685 5.14054 5.32235 5.44169 5.47203 5.53398 5.68395 5.77198 5.87548 6.01823 6.15833 6.32245 6.43244 6.53010 6.57789 6.68605 6.89744 7.01695 7.13095 7.13619 7.21197 7.50300 7.73332 7.97574 8.01827 8.61047 8.88600 9.49848 10.61090 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013851 B = 0.002195 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.094093 B =12753.834696 C =12839.876698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.198 4.198 3 C 0.173 3.827 4 O -0.379 6.379 5 C 0.049 3.951 6 C 0.143 3.857 7 N -0.745 5.745 8 C 0.704 3.296 9 O -0.597 6.597 10 N -0.737 5.737 11 C 0.187 3.813 12 C -0.074 4.074 13 C -0.185 4.185 14 C -0.078 4.078 15 C -0.212 4.212 16 C 0.156 3.844 17 O -0.216 6.216 18 C -0.391 4.391 19 H 0.107 0.893 20 C 0.064 3.936 21 N -0.878 5.878 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.170 4.170 27 H 0.222 0.778 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.399 0.601 35 H 0.399 0.601 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.134 0.866 41 H 0.280 0.720 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.916 -24.972 -6.625 26.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.198 4.198 3 C 0.098 3.902 4 O -0.299 6.299 5 C -0.028 4.028 6 C 0.019 3.981 7 N -0.402 5.402 8 C 0.404 3.596 9 O -0.476 6.476 10 N -0.392 5.392 11 C 0.064 3.936 12 C -0.075 4.075 13 C -0.204 4.204 14 C -0.096 4.096 15 C -0.232 4.232 16 C 0.103 3.897 17 O -0.121 6.121 18 C -0.466 4.466 19 H 0.124 0.876 20 C -0.140 4.140 21 N -0.516 5.516 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.190 4.190 27 H 0.239 0.761 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.233 0.767 35 H 0.233 0.767 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.151 0.849 41 H 0.090 0.910 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.193 -24.693 -7.481 25.998 hybrid contribution 0.053 -0.102 1.271 1.276 sum -3.140 -24.795 -6.210 25.753 Atomic orbital electron populations 1.25038 0.95976 0.98373 0.99267 1.22500 0.93911 1.01927 1.01506 1.19068 0.84870 0.90944 0.95353 1.88027 1.21205 1.51264 1.69415 1.22865 0.81145 0.98635 1.00128 1.21180 0.99906 0.80521 0.96532 1.45000 1.64365 1.04770 1.26078 1.15928 0.79612 0.80385 0.83698 1.90914 1.47806 1.86535 1.22346 1.45240 1.63164 1.04785 1.25982 1.19989 1.00494 0.78935 0.94230 1.19287 0.94286 0.96889 0.97061 1.20572 0.95342 1.00977 1.03522 1.20809 0.98704 0.95242 0.94873 1.21365 0.94613 1.04548 1.02627 1.19064 0.90016 0.92185 0.88390 1.83574 1.41786 1.41359 1.45405 1.20759 1.00375 1.02766 1.22720 0.87603 1.24472 0.99815 0.94467 0.95231 1.69643 1.37878 1.16736 1.27302 0.86177 0.82859 0.80304 0.77535 1.19829 1.20769 1.18381 1.20089 1.00436 0.99481 0.99008 0.76119 0.90746 0.90665 0.91079 0.92011 0.90702 0.89829 0.76690 0.76712 0.91036 0.91018 0.87246 0.86984 0.84854 0.90992 0.86372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 19.25 29.55 0.57 -0.68 16 2 C -0.20 -1.67 13.73 -37.12 -0.51 -2.18 16 3 C 0.17 1.09 6.41 34.37 0.22 1.31 16 4 O -0.38 -3.10 10.25 -35.23 -0.36 -3.47 16 5 C 0.05 0.28 6.07 37.16 0.23 0.50 16 6 C 0.14 1.20 6.06 -4.04 -0.02 1.18 16 7 N -0.75 -7.59 5.51 -65.22 -0.36 -7.95 16 8 C 0.70 9.71 8.57 -86.92 -0.74 8.97 16 9 O -0.60 -10.47 16.34 5.29 0.09 -10.38 16 10 N -0.74 -9.52 5.55 -66.42 -0.37 -9.89 16 11 C 0.19 2.67 5.80 -5.20 -0.03 2.64 16 12 C -0.07 -1.20 5.25 -104.65 -0.55 -1.75 16 13 C -0.18 -2.92 9.70 -39.53 -0.38 -3.30 16 14 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 15 C -0.21 -4.38 9.17 -39.39 -0.36 -4.74 16 16 C 0.16 3.45 6.65 -39.11 -0.26 3.19 16 17 O -0.22 -5.55 8.59 0.05 0.00 -5.55 16 18 C -0.39 -10.77 9.95 30.89 0.31 -10.46 16 19 H 0.11 2.97 5.44 -52.49 -0.29 2.69 16 20 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 21 N -0.88 -24.98 13.96 55.48 0.77 -24.20 16 22 Si 0.91 21.36 28.62 -169.99 -4.86 16.49 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 26 C -0.17 -3.21 9.65 -39.40 -0.38 -3.59 16 27 H 0.22 0.86 7.80 -54.08 -0.42 0.44 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.40 3.33 8.49 -40.82 -0.35 2.98 16 35 H 0.40 4.53 8.48 -40.82 -0.35 4.19 16 36 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 38 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 39 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 40 H 0.13 2.90 5.64 -52.49 -0.30 2.61 16 41 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 375.26 15.07 5.66 5.66 Total: -1.00 -33.42 375.26 -7.33 -40.75 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.48 Total: 7.53 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -2.41 Total: -8.99 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.05 Total: -42.04 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.27 Total: -19.39 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.86 Total: 16.49 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.42 -7.33 -40.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116569731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.810 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds