Wall clock time and date at job start Tue Mar 31 2020 12:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 O 1.42906 * 109.47019 * 142.46625 * 3 2 1 5 5 C 1.42900 * 113.99607 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46754 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47051 * 65.00026 * 6 5 4 8 8 C 1.34782 * 120.00406 * 179.97438 * 7 6 5 9 9 O 1.21591 * 119.99323 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00403 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99933 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47005 * 179.97438 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.97666 * 12 11 10 14 14 C 1.38280 * 120.13484 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.07150 * 359.67534 * 14 13 12 16 16 C 1.38861 * 119.92830 * 0.59673 * 15 14 13 17 17 O 1.35751 * 120.06597 * 179.69892 * 16 15 14 18 18 C 1.34829 * 117.00376 * 354.17384 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38657 * 120.00083 * 185.03464 * 18 17 16 21 21 N 1.31555 * 119.99797 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99748 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47410 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47495 * 329.99577 * 22 20 18 26 26 C 1.38073 * 119.96947 * 89.99513 * 12 11 10 27 27 H 4.38450 * 5.44445 * 179.97438 * 4 1 2 28 28 H 1.08998 * 109.47201 * 22.46688 * 3 2 1 29 29 H 1.08996 * 109.47478 * 262.46500 * 3 2 1 30 30 H 1.08997 * 109.47372 * 60.00048 * 5 4 3 31 31 H 1.08998 * 109.47232 * 299.99413 * 5 4 3 32 32 H 1.09001 * 109.47494 * 305.00005 * 6 5 4 33 33 H 1.09005 * 109.47313 * 184.99482 * 6 5 4 34 34 H 0.97009 * 120.00113 * 359.97438 * 7 6 5 35 35 H 0.97001 * 119.99467 * 359.97438 * 10 8 7 36 36 H 1.08993 * 109.47130 * 59.99768 * 11 10 8 37 37 H 1.09003 * 109.47080 * 299.99631 * 11 10 8 38 38 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 39 39 H 1.08007 * 119.96121 * 179.97438 * 14 13 12 40 40 H 1.08001 * 120.03709 * 180.32387 * 15 14 13 41 41 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 42 42 H 1.08001 * 120.03594 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.0693 -0.8208 5 6 4.5463 1.1597 -0.8891 6 6 4.9403 2.3318 -1.7903 7 7 4.5011 3.5879 -1.1776 8 6 4.7420 4.7604 -1.7972 9 8 5.3243 4.7754 -2.8645 10 7 4.3384 5.9160 -1.2334 11 6 4.5998 7.1903 -1.9072 12 6 4.0512 8.3205 -1.0749 13 6 2.7507 8.7513 -1.2662 14 6 2.2438 9.7884 -0.5048 15 6 3.0330 10.3929 0.4541 16 6 4.3407 9.9664 0.6446 17 8 5.1207 10.5627 1.5821 18 6 4.6080 11.6400 2.2100 19 1 3.5892 11.9428 2.0182 20 6 5.3887 12.3593 3.1021 21 7 4.8885 13.4108 3.7143 22 14 7.1510 11.8361 3.4333 23 1 8.0581 12.5172 2.4750 24 1 7.5258 12.2099 4.8208 25 1 7.2702 10.3652 3.2677 26 6 4.8472 8.9251 -0.1224 27 1 -1.0502 -0.0004 0.0001 28 1 3.0098 -0.9488 -0.3927 29 1 3.0093 0.1356 1.0187 30 1 4.9499 0.2343 -1.2999 31 1 4.9486 1.3190 0.1113 32 1 4.4649 2.2169 -2.7644 33 1 6.0232 2.3470 -1.9139 34 1 4.0369 3.5759 -0.3259 35 1 3.8742 5.9039 -0.3817 36 1 4.1159 7.1908 -2.8839 37 1 5.6745 7.3205 -2.0341 38 1 2.1299 8.2768 -2.0118 39 1 1.2281 10.1228 -0.6568 40 1 2.6349 11.1993 1.0520 41 1 5.4345 13.9138 4.3386 42 1 5.8627 8.5888 0.0260 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116569731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:46 Heat of formation + Delta-G solvation = -41.729046 kcal Electronic energy + Delta-G solvation = -24568.391006 eV Core-core repulsion = 20708.402774 eV Total energy + Delta-G solvation = -3859.988233 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.21564 -40.75575 -39.20592 -38.58798 -36.04587 -35.60976 -34.45257 -34.09358 -32.34321 -31.07078 -30.29073 -27.76218 -27.35740 -26.59160 -23.62568 -23.28915 -22.30053 -21.95880 -19.90159 -19.56512 -19.31160 -18.72507 -17.88087 -17.53563 -16.90193 -16.84098 -16.70467 -16.31467 -15.99226 -15.81823 -15.66920 -15.41666 -15.16139 -14.83980 -14.57068 -14.29368 -14.14433 -13.82012 -13.62331 -13.33200 -13.22765 -13.09952 -12.59264 -12.48176 -12.44826 -12.36805 -11.94077 -11.57270 -11.49566 -11.38272 -11.30454 -10.91671 -10.52423 -10.37842 -9.80832 -9.74781 -9.12648 -8.50068 -6.22811 0.33615 0.64565 1.31817 1.35411 1.51686 1.51953 1.82835 1.83414 2.17076 2.27632 2.75575 2.92413 2.98343 3.11730 3.44328 3.59833 3.77221 4.01158 4.06613 4.23697 4.28489 4.33833 4.42676 4.48765 4.50045 4.55204 4.64581 4.69373 4.73295 4.90198 4.93542 5.04641 5.19176 5.36746 5.43957 5.51666 5.63403 5.69138 5.74611 5.88968 5.99237 6.14392 6.19377 6.61213 6.84368 7.07579 7.57894 7.58230 8.61311 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013851 B = 0.002195 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.094093 B =12753.834696 C =12839.876698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.234 4.234 3 C 0.168 3.832 4 O -0.406 6.406 5 C 0.055 3.945 6 C 0.139 3.861 7 N -0.733 5.733 8 C 0.701 3.299 9 O -0.636 6.636 10 N -0.731 5.731 11 C 0.194 3.806 12 C -0.060 4.060 13 C -0.159 4.159 14 C -0.074 4.074 15 C -0.227 4.227 16 C 0.119 3.881 17 O -0.244 6.244 18 C -0.398 4.398 19 H 0.083 0.917 20 C 0.010 3.990 21 N -0.922 5.922 22 Si 0.969 3.031 23 H -0.268 1.268 24 H -0.268 1.268 25 H -0.262 1.262 26 C -0.168 4.168 27 H 0.246 0.754 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.410 0.590 35 H 0.408 0.592 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.110 0.890 41 H 0.284 0.716 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.080 -27.773 -7.737 29.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.235 4.235 3 C 0.093 3.907 4 O -0.327 6.327 5 C -0.021 4.021 6 C 0.015 3.985 7 N -0.389 5.389 8 C 0.401 3.599 9 O -0.518 6.518 10 N -0.387 5.387 11 C 0.070 3.930 12 C -0.060 4.060 13 C -0.178 4.178 14 C -0.092 4.092 15 C -0.247 4.247 16 C 0.070 3.930 17 O -0.152 6.152 18 C -0.474 4.474 19 H 0.101 0.899 20 C -0.189 4.189 21 N -0.563 5.563 22 Si 0.792 3.208 23 H -0.193 1.193 24 H -0.193 1.193 25 H -0.187 1.187 26 C -0.187 4.187 27 H 0.263 0.737 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.246 0.754 35 H 0.243 0.757 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.165 0.835 39 H 0.161 0.839 40 H 0.128 0.872 41 H 0.094 0.906 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.396 -27.546 -8.587 29.052 hybrid contribution -0.114 0.551 1.363 1.475 sum -3.510 -26.995 -7.224 28.164 Atomic orbital electron populations 1.25850 0.97031 0.97684 0.98635 1.23293 0.95256 1.02678 1.02230 1.19295 0.83921 0.91285 0.96151 1.87970 1.22425 1.52192 1.70075 1.22897 0.80329 0.98297 1.00586 1.21329 1.00040 0.80675 0.96496 1.44984 1.63470 1.04317 1.26138 1.16079 0.79337 0.81176 0.83351 1.90890 1.49632 1.87145 1.24180 1.45064 1.63158 1.04215 1.26224 1.19867 1.00300 0.78712 0.94152 1.19460 0.94116 0.96702 0.95754 1.21034 0.95163 0.99134 1.02425 1.21136 0.99720 0.94904 0.93444 1.21399 0.94799 1.04708 1.03778 1.19570 0.90739 0.93491 0.89196 1.83519 1.42655 1.41593 1.47448 1.20702 0.99730 1.03743 1.23239 0.89916 1.25262 1.03786 0.94593 0.95215 1.69725 1.39506 1.18238 1.28812 0.85237 0.78054 0.79529 0.78026 1.19284 1.19271 1.18657 1.20274 1.01149 0.98472 0.98852 0.73729 0.88847 0.89007 0.88628 0.90231 0.92367 0.89426 0.75450 0.75655 0.90073 0.91458 0.83518 0.83861 0.87164 0.90596 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 19.25 74.32 1.43 -0.92 16 2 C -0.23 -3.64 13.73 31.12 0.43 -3.21 16 3 C 0.17 1.77 6.41 70.18 0.45 2.22 16 4 O -0.41 -5.78 10.25 -148.98 -1.53 -7.31 16 5 C 0.06 0.48 6.07 71.98 0.44 0.91 16 6 C 0.14 2.08 6.06 86.38 0.52 2.60 16 7 N -0.73 -13.38 5.51 -478.52 -2.64 -16.01 16 8 C 0.70 17.91 8.57 179.05 1.53 19.45 16 9 O -0.64 -21.40 16.34 -4.00 -0.07 -21.47 16 10 N -0.73 -16.92 5.55 -482.30 -2.68 -19.60 16 11 C 0.19 4.97 5.80 85.63 0.50 5.46 16 12 C -0.06 -1.75 5.25 -19.88 -0.10 -1.85 16 13 C -0.16 -4.38 9.70 22.30 0.22 -4.17 16 14 C -0.07 -2.36 10.04 22.25 0.22 -2.13 16 15 C -0.23 -9.48 9.17 22.39 0.21 -9.27 16 16 C 0.12 5.35 6.65 22.58 0.15 5.50 16 17 O -0.24 -12.97 8.59 -22.74 -0.20 -13.16 16 18 C -0.40 -23.00 9.95 67.92 0.68 -22.32 16 19 H 0.08 4.99 5.44 -2.91 -0.02 4.97 16 20 C 0.01 0.57 5.49 84.83 0.47 1.03 16 21 N -0.92 -54.50 13.96 21.61 0.30 -54.20 16 22 Si 0.97 45.00 28.62 68.60 1.96 46.96 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 25 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 26 C -0.17 -6.14 9.65 22.39 0.22 -5.93 16 27 H 0.25 1.47 7.80 -4.41 -0.03 1.43 16 28 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.41 5.80 8.49 -92.70 -0.79 5.01 16 35 H 0.41 8.06 8.48 -92.71 -0.79 7.27 16 36 H 0.08 2.00 8.08 -2.39 -0.02 1.98 16 37 H 0.07 1.84 8.09 -2.39 -0.02 1.82 16 38 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 39 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 40 H 0.11 5.09 5.64 -2.91 -0.02 5.07 16 41 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 42 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -75.56 375.26 2.00 -73.56 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -0.51 Total: 23.85 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 7.35 Total: -12.62 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -5.01 Total: -89.82 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -1.79 Total: -41.94 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.96 Total: 46.96 kcal Total: -75.56 2.00 -73.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116569731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.832 kcal (2) G-P(sol) polarization free energy of solvation -75.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds