Wall clock time and date at job start Tue Mar 31 2020 12:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50705 * 119.99697 * 2 1 4 4 O 1.42893 * 109.46785 * 135.00628 * 3 2 1 5 5 C 1.35898 * 117.00008 * 180.02562 * 4 3 2 6 6 C 1.38805 * 120.02148 * 359.97438 * 5 4 3 7 7 C 1.38168 * 120.08361 * 180.02562 * 6 5 4 8 8 C 1.38162 * 120.12756 * 359.97438 * 7 6 5 9 9 C 1.38885 * 120.04067 * 359.97438 * 8 7 6 10 10 N 1.39936 * 120.04388 * 180.02562 * 9 8 7 11 11 C 1.34780 * 119.99839 * 213.34236 * 10 9 8 12 12 O 1.21590 * 120.00124 * 5.13954 * 11 10 9 13 13 N 1.34779 * 119.99875 * 185.13868 * 11 10 9 14 14 C 1.47062 * 136.05650 * 359.63215 * 13 11 10 15 15 C 1.53238 * 88.08227 * 207.20240 * 14 13 11 16 16 O 1.42897 * 114.01898 * 87.71489 * 15 14 13 17 17 C 1.50699 * 114.32514 * 220.47131 * 15 14 13 18 18 H 1.07998 * 120.00309 * 99.19827 * 17 15 14 19 19 C 1.37880 * 119.99922 * 279.19411 * 17 15 14 20 20 N 1.31508 * 119.99910 * 7.49368 * 19 17 15 21 21 Si 1.86798 * 120.00123 * 187.48998 * 19 17 15 22 22 H 1.48500 * 109.47209 * 94.99172 * 21 19 17 23 23 H 1.48498 * 109.47552 * 214.99354 * 21 19 17 24 24 H 1.48500 * 109.47245 * 334.99414 * 21 19 17 25 25 C 1.47062 * 136.05572 * 180.02562 * 13 11 10 26 26 C 1.38586 * 120.01959 * 179.72348 * 5 4 3 27 27 H 1.08000 * 119.99869 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.99570 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00243 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.46989 * 15.00590 * 3 2 1 31 31 H 1.09000 * 109.46837 * 255.00496 * 3 2 1 32 32 H 1.08004 * 119.95396 * 359.97438 * 6 5 4 33 33 H 1.08009 * 119.93661 * 179.97438 * 7 6 5 34 34 H 1.07997 * 119.98264 * 179.97438 * 8 7 6 35 35 H 0.96998 * 119.99891 * 33.33566 * 10 9 8 36 36 H 1.09004 * 113.46950 * 321.93163 * 14 13 11 37 37 H 1.09000 * 113.46945 * 92.37401 * 14 13 11 38 38 H 0.96706 * 114.00237 * 80.60319 * 16 15 14 39 39 H 0.97008 * 120.00099 * 179.97438 * 20 19 17 40 40 H 1.09002 * 113.46591 * 267.62004 * 25 13 11 41 41 H 1.08999 * 113.47093 * 38.06099 * 25 13 11 42 42 H 1.08000 * 120.06438 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 8 3.1268 1.2413 0.9525 5 6 3.9091 2.3453 1.0789 6 6 3.6581 3.4670 0.3008 7 6 4.4530 4.5900 0.4278 8 6 5.4997 4.6003 1.3297 9 6 5.7548 3.4812 2.1116 10 7 6.8145 3.4918 3.0254 11 6 7.4979 2.3579 3.2780 12 8 7.2560 1.3484 2.6449 13 7 8.4493 2.3429 4.2326 14 6 9.0198 3.3178 5.1744 15 6 10.3181 2.5041 5.1501 16 8 11.2192 2.8778 4.1059 17 6 10.9852 2.3594 6.4936 18 1 10.8522 1.4545 7.0679 19 6 11.7655 3.3823 6.9896 20 7 11.8099 4.5381 6.3639 21 14 12.7593 3.1264 8.5504 22 1 14.1426 2.7192 8.1953 23 1 12.7995 4.3927 9.3250 24 1 12.1261 2.0636 9.3718 25 6 9.3786 1.3464 4.7858 26 6 4.9548 2.3537 1.9883 27 1 -0.5400 0.9353 0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3856 2.1161 0.2661 31 1 2.4755 1.4869 -0.9927 32 1 2.8409 3.4617 -0.4053 33 1 4.2559 5.4614 -0.1791 34 1 6.1198 5.4792 1.4268 35 1 7.0573 4.3152 3.4769 36 1 9.1276 4.3171 4.7526 37 1 8.5276 3.3210 6.1469 38 1 11.7482 3.6625 4.3049 39 1 12.3586 5.2579 6.7130 40 1 8.9831 0.8188 5.6537 41 1 9.7909 0.6730 4.0343 42 1 5.1488 1.4834 2.5977 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116756521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:57 Heat of formation + Delta-G solvation = -17.991449 kcal Electronic energy + Delta-G solvation = -25668.015485 eV Core-core repulsion = 21809.056592 eV Total energy + Delta-G solvation = -3858.958893 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.55410 -39.73337 -38.41542 -37.07464 -34.53681 -34.04788 -33.96046 -32.32802 -30.47473 -29.64382 -28.03550 -26.72432 -25.31687 -25.13906 -22.95689 -22.00416 -20.63968 -20.14068 -19.02597 -18.49451 -17.69358 -16.91958 -16.48082 -16.11564 -16.03530 -15.76809 -15.22256 -15.06867 -14.81856 -14.38911 -14.13180 -13.77179 -13.57064 -13.15464 -13.04493 -12.94856 -12.66274 -12.48528 -12.07130 -11.84367 -11.68194 -11.58626 -11.48640 -11.09355 -11.01200 -10.99366 -10.51766 -10.34107 -10.10663 -9.85859 -9.81491 -9.25870 -8.87780 -8.48518 -8.32164 -8.07457 -7.74122 -6.42855 -4.51449 1.36218 1.49218 1.72767 2.82062 3.13794 3.22549 3.24589 3.27823 3.51063 3.95897 4.15793 4.31460 4.51960 4.69679 4.81387 4.82686 4.95726 5.05295 5.11491 5.24176 5.35680 5.44675 5.50478 5.58154 5.80195 5.89204 6.10473 6.16757 6.23148 6.26784 6.32169 6.32978 6.39086 6.48523 6.49489 6.57884 6.62580 7.00258 7.02062 7.42813 7.54420 7.59344 7.79598 8.51497 8.55645 8.96932 9.19352 9.24957 10.64464 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028344 B = 0.002388 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.613130 B =11723.441696 C =12302.671808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.153 4.153 3 C 0.087 3.913 4 O -0.309 6.309 5 C 0.147 3.853 6 C -0.236 4.236 7 C -0.060 4.060 8 C -0.190 4.190 9 C 0.221 3.779 10 N -0.686 5.686 11 C 0.728 3.272 12 O -0.587 6.587 13 N -0.653 5.653 14 C 0.076 3.924 15 C 0.239 3.761 16 O -0.567 6.567 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.893 5.893 21 Si 0.906 3.094 22 H -0.277 1.277 23 H -0.285 1.285 24 H -0.271 1.271 25 C 0.131 3.869 26 C -0.157 4.157 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.409 0.591 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.387 0.613 39 H 0.271 0.729 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.154 1.033 -9.200 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.171 4.171 3 C 0.012 3.988 4 O -0.223 6.223 5 C 0.102 3.898 6 C -0.256 4.256 7 C -0.079 4.079 8 C -0.211 4.211 9 C 0.125 3.875 10 N -0.333 5.333 11 C 0.432 3.568 12 O -0.465 6.465 13 N -0.390 5.390 14 C -0.046 4.046 15 C 0.198 3.802 16 O -0.376 6.376 17 C -0.574 4.574 18 H 0.091 0.909 19 C -0.130 4.130 20 N -0.532 5.532 21 Si 0.733 3.267 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.195 1.195 25 C 0.009 3.991 26 C -0.178 4.178 27 H 0.117 0.883 28 H 0.125 0.875 29 H 0.138 0.862 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.245 0.755 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.239 0.761 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.583 -0.259 -9.921 20.191 hybrid contribution 0.774 1.153 1.139 1.796 sum -16.809 0.894 -8.782 18.986 Atomic orbital electron populations 1.23861 0.95386 1.02475 0.99518 1.22723 0.95666 0.98011 1.00669 1.21801 0.87970 0.96638 0.92396 1.86105 1.42006 1.35812 1.58382 1.18683 0.90770 0.85664 0.94731 1.21095 1.04783 0.94649 1.05062 1.20612 0.93562 0.97210 0.96488 1.20792 1.01887 0.99145 0.99262 1.17162 0.86511 0.94142 0.89727 1.42640 1.33127 1.12454 1.45059 1.15249 0.78152 0.82912 0.80488 1.90895 1.69742 1.32925 1.52955 1.48875 1.36693 1.18363 1.35056 1.24111 0.95782 0.94155 0.90597 1.19507 0.85125 0.88894 0.86701 1.86102 1.56344 1.51802 1.43329 1.21357 1.31005 1.03077 1.01944 0.90888 1.25066 0.95706 0.94396 0.97833 1.69661 1.39557 1.02959 1.41028 0.86354 0.80440 0.77881 0.82058 1.20287 1.21032 1.19520 1.23186 0.85958 0.93713 0.96264 1.20354 0.94505 1.00590 1.02365 0.88295 0.87488 0.86164 0.91528 0.91024 0.85815 0.85562 0.85565 0.75549 0.91894 0.90027 0.76111 0.91879 0.89523 0.91432 0.83771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.18 14.31 29.01 0.42 -0.77 16 2 C -0.15 -1.31 9.89 -36.03 -0.36 -1.67 16 3 C 0.09 0.84 5.15 36.01 0.19 1.03 16 4 O -0.31 -4.33 10.12 -19.42 -0.20 -4.53 16 5 C 0.15 2.16 6.68 -39.24 -0.26 1.90 16 6 C -0.24 -2.81 9.04 -39.40 -0.36 -3.17 16 7 C -0.06 -0.68 10.03 -39.64 -0.40 -1.08 16 8 C -0.19 -2.48 9.96 -39.37 -0.39 -2.87 16 9 C 0.22 3.57 6.27 -83.71 -0.53 3.04 16 10 N -0.69 -11.71 5.35 -14.24 -0.08 -11.79 16 11 C 0.73 15.25 8.53 -86.91 -0.74 14.51 16 12 O -0.59 -13.94 14.81 5.29 0.08 -13.86 16 13 N -0.65 -13.73 3.69 -191.20 -0.71 -14.44 16 14 C 0.08 1.59 7.69 -8.65 -0.07 1.52 16 15 C 0.24 5.58 1.41 -91.40 -0.13 5.45 16 16 O -0.57 -14.10 13.51 -35.23 -0.48 -14.57 16 17 C -0.54 -13.07 8.66 -34.44 -0.30 -13.37 16 18 H 0.07 1.74 7.82 -52.49 -0.41 1.33 16 19 C 0.07 1.78 5.33 -17.82 -0.10 1.69 16 20 N -0.89 -21.96 11.64 55.43 0.65 -21.32 16 21 Si 0.91 19.11 29.54 -169.99 -5.02 14.09 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 C 0.13 2.83 8.03 -8.52 -0.07 2.76 16 26 C -0.16 -2.68 8.59 -39.24 -0.34 -3.02 16 27 H 0.10 0.56 7.90 -52.49 -0.41 0.14 16 28 H 0.11 0.58 8.06 -52.49 -0.42 0.15 16 29 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.07 0.54 7.38 -51.93 -0.38 0.16 16 31 H 0.07 0.61 7.66 -51.93 -0.40 0.21 16 32 H 0.12 1.12 6.29 -52.48 -0.33 0.79 16 33 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 34 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.41 6.03 8.54 -40.82 -0.35 5.68 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 38 H 0.39 9.58 7.11 45.56 0.32 9.90 16 39 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 40 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 41 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.14 2.81 6.43 -52.49 -0.34 2.47 16 LS Contribution 361.72 15.07 5.45 5.45 Total: -1.00 -29.30 361.72 -8.54 -37.84 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -4.81 Total: 17.17 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -3.42 Total: 5.96 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.14 Total: -47.55 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -0.59 Total: -32.96 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.30 -8.54 -37.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116756521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.844 kcal (2) G-P(sol) polarization free energy of solvation -29.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds