Wall clock time and date at job start Tue Mar 31 2020 12:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50705 * 119.99697 * 2 1 4 4 O 1.42893 * 109.46785 * 135.00628 * 3 2 1 5 5 C 1.35898 * 117.00008 * 180.02562 * 4 3 2 6 6 C 1.38805 * 120.02148 * 359.97438 * 5 4 3 7 7 C 1.38168 * 120.08361 * 180.02562 * 6 5 4 8 8 C 1.38162 * 120.12756 * 359.97438 * 7 6 5 9 9 C 1.38885 * 120.04067 * 359.97438 * 8 7 6 10 10 N 1.39936 * 120.04388 * 180.02562 * 9 8 7 11 11 C 1.34780 * 119.99839 * 213.34236 * 10 9 8 12 12 O 1.21590 * 120.00124 * 5.13954 * 11 10 9 13 13 N 1.34779 * 119.99875 * 185.13868 * 11 10 9 14 14 C 1.47062 * 136.05650 * 359.63215 * 13 11 10 15 15 C 1.53238 * 88.08227 * 207.20240 * 14 13 11 16 16 O 1.42897 * 114.01898 * 87.71489 * 15 14 13 17 17 C 1.50699 * 114.32514 * 220.47131 * 15 14 13 18 18 H 1.07998 * 120.00309 * 99.19827 * 17 15 14 19 19 C 1.37880 * 119.99922 * 279.19411 * 17 15 14 20 20 N 1.31508 * 119.99910 * 7.49368 * 19 17 15 21 21 Si 1.86798 * 120.00123 * 187.48998 * 19 17 15 22 22 H 1.48500 * 109.47209 * 94.99172 * 21 19 17 23 23 H 1.48498 * 109.47552 * 214.99354 * 21 19 17 24 24 H 1.48500 * 109.47245 * 334.99414 * 21 19 17 25 25 C 1.47062 * 136.05572 * 180.02562 * 13 11 10 26 26 C 1.38586 * 120.01959 * 179.72348 * 5 4 3 27 27 H 1.08000 * 119.99869 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.99570 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00243 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.46989 * 15.00590 * 3 2 1 31 31 H 1.09000 * 109.46837 * 255.00496 * 3 2 1 32 32 H 1.08004 * 119.95396 * 359.97438 * 6 5 4 33 33 H 1.08009 * 119.93661 * 179.97438 * 7 6 5 34 34 H 1.07997 * 119.98264 * 179.97438 * 8 7 6 35 35 H 0.96998 * 119.99891 * 33.33566 * 10 9 8 36 36 H 1.09004 * 113.46950 * 321.93163 * 14 13 11 37 37 H 1.09000 * 113.46945 * 92.37401 * 14 13 11 38 38 H 0.96706 * 114.00237 * 80.60319 * 16 15 14 39 39 H 0.97008 * 120.00099 * 179.97438 * 20 19 17 40 40 H 1.09002 * 113.46591 * 267.62004 * 25 13 11 41 41 H 1.08999 * 113.47093 * 38.06099 * 25 13 11 42 42 H 1.08000 * 120.06438 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 8 3.1268 1.2413 0.9525 5 6 3.9091 2.3453 1.0789 6 6 3.6581 3.4670 0.3008 7 6 4.4530 4.5900 0.4278 8 6 5.4997 4.6003 1.3297 9 6 5.7548 3.4812 2.1116 10 7 6.8145 3.4918 3.0254 11 6 7.4979 2.3579 3.2780 12 8 7.2560 1.3484 2.6449 13 7 8.4493 2.3429 4.2326 14 6 9.0198 3.3178 5.1744 15 6 10.3181 2.5041 5.1501 16 8 11.2192 2.8778 4.1059 17 6 10.9852 2.3594 6.4936 18 1 10.8522 1.4545 7.0679 19 6 11.7655 3.3823 6.9896 20 7 11.8099 4.5381 6.3639 21 14 12.7593 3.1264 8.5504 22 1 14.1426 2.7192 8.1953 23 1 12.7995 4.3927 9.3250 24 1 12.1261 2.0636 9.3718 25 6 9.3786 1.3464 4.7858 26 6 4.9548 2.3537 1.9883 27 1 -0.5400 0.9353 0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3856 2.1161 0.2661 31 1 2.4755 1.4869 -0.9927 32 1 2.8409 3.4617 -0.4053 33 1 4.2559 5.4614 -0.1791 34 1 6.1198 5.4792 1.4268 35 1 7.0573 4.3152 3.4769 36 1 9.1276 4.3171 4.7526 37 1 8.5276 3.3210 6.1469 38 1 11.7482 3.6625 4.3049 39 1 12.3586 5.2579 6.7130 40 1 8.9831 0.8188 5.6537 41 1 9.7909 0.6730 4.0343 42 1 5.1488 1.4834 2.5977 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116756521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:56 Heat of formation + Delta-G solvation = -37.851161 kcal Electronic energy + Delta-G solvation = -25668.876667 eV Core-core repulsion = 21809.056592 eV Total energy + Delta-G solvation = -3859.820075 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.92691 -41.02483 -39.86571 -38.35952 -35.89781 -35.65395 -34.89033 -34.21495 -31.62450 -30.92331 -29.51839 -27.53064 -27.04054 -26.84664 -24.12071 -23.12138 -22.10295 -20.95881 -20.56252 -19.69720 -19.39827 -18.54521 -17.52088 -17.38521 -17.01634 -16.98119 -16.88466 -16.53995 -16.25363 -15.81926 -15.46339 -15.08276 -14.67564 -14.50456 -14.39164 -14.34779 -13.88268 -13.80814 -13.54294 -13.48213 -12.80197 -12.76440 -12.73971 -12.53652 -12.35257 -12.25620 -12.17801 -11.90266 -11.52116 -11.26840 -11.03727 -10.73101 -10.45768 -10.28898 -9.73793 -9.38617 -9.01004 -8.26888 -6.41349 0.25840 0.44599 1.10714 1.37117 1.46864 1.52279 1.59998 1.96983 2.35045 2.41648 2.80831 2.83433 2.98431 3.64706 3.80481 3.94488 4.03427 4.08156 4.14792 4.24145 4.26286 4.37558 4.37892 4.52683 4.53196 4.59006 4.64055 4.76996 4.83561 4.88781 4.95304 5.18564 5.26899 5.31493 5.35350 5.46517 5.60057 5.64533 5.72357 5.86956 5.92909 6.14542 6.45996 6.63860 6.92272 7.29341 7.33654 7.38903 8.79823 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028344 B = 0.002388 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.613130 B =11723.441696 C =12302.671808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.183 4.183 3 C 0.081 3.919 4 O -0.336 6.336 5 C 0.137 3.863 6 C -0.224 4.224 7 C -0.048 4.048 8 C -0.186 4.186 9 C 0.193 3.807 10 N -0.674 5.674 11 C 0.723 3.277 12 O -0.621 6.621 13 N -0.656 5.656 14 C 0.093 3.907 15 C 0.222 3.778 16 O -0.579 6.579 17 C -0.554 4.554 18 H 0.073 0.927 19 C 0.037 3.963 20 N -0.909 5.909 21 Si 0.964 3.036 22 H -0.280 1.280 23 H -0.281 1.281 24 H -0.268 1.268 25 C 0.131 3.869 26 C -0.190 4.190 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.159 0.841 33 H 0.171 0.829 34 H 0.149 0.851 35 H 0.419 0.581 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.385 0.615 39 H 0.274 0.726 40 H 0.104 0.896 41 H 0.055 0.945 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.950 2.848 -10.014 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.202 4.202 3 C 0.007 3.993 4 O -0.251 6.251 5 C 0.091 3.909 6 C -0.243 4.243 7 C -0.067 4.067 8 C -0.207 4.207 9 C 0.097 3.903 10 N -0.321 5.321 11 C 0.427 3.573 12 O -0.503 6.503 13 N -0.392 5.392 14 C -0.030 4.030 15 C 0.181 3.819 16 O -0.388 6.388 17 C -0.592 4.592 18 H 0.091 0.909 19 C -0.165 4.165 20 N -0.548 5.548 21 Si 0.790 3.210 22 H -0.206 1.206 23 H -0.207 1.207 24 H -0.192 1.192 25 C 0.008 3.992 26 C -0.211 4.211 27 H 0.133 0.867 28 H 0.139 0.861 29 H 0.127 0.873 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.176 0.824 33 H 0.188 0.812 34 H 0.167 0.833 35 H 0.257 0.743 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.236 0.764 39 H 0.083 0.917 40 H 0.122 0.878 41 H 0.073 0.927 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -19.413 1.582 -10.745 22.245 hybrid contribution 1.194 0.564 1.291 1.847 sum -18.219 2.146 -9.454 20.638 Atomic orbital electron populations 1.24119 0.94644 1.03927 0.96346 1.22712 0.96442 0.97382 1.03619 1.22099 0.87294 0.97862 0.92053 1.86082 1.43055 1.36121 1.59795 1.18803 0.90432 0.86911 0.94757 1.21504 1.05251 0.93396 1.04172 1.21147 0.91843 0.98209 0.95456 1.21108 1.02559 0.98507 0.98529 1.17455 0.86544 0.95295 0.90965 1.42433 1.32906 1.11519 1.45278 1.15435 0.78190 0.83540 0.80091 1.90867 1.70750 1.34565 1.54100 1.48834 1.36894 1.18170 1.35307 1.23896 0.94350 0.93813 0.90909 1.19715 0.85646 0.90330 0.86219 1.86092 1.56843 1.51773 1.44141 1.21546 1.31874 1.03307 1.02430 0.90931 1.25692 0.96324 0.94179 1.00338 1.69718 1.39780 1.03312 1.41965 0.85441 0.78745 0.77771 0.79040 1.20596 1.20685 1.19219 1.23207 0.86026 0.93395 0.96587 1.20239 0.96888 1.00050 1.03949 0.86666 0.86142 0.87282 0.89578 0.89914 0.82353 0.81180 0.83324 0.74311 0.91605 0.89175 0.76409 0.91650 0.87821 0.92677 0.87674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 14.31 67.77 0.97 -0.77 16 2 C -0.18 -3.02 9.89 25.64 0.25 -2.76 16 3 C 0.08 1.45 5.15 71.24 0.37 1.82 16 4 O -0.34 -9.55 10.12 -92.40 -0.93 -10.48 16 5 C 0.14 4.00 6.68 22.49 0.15 4.15 16 6 C -0.22 -4.67 9.04 22.39 0.20 -4.47 16 7 C -0.05 -0.91 10.03 22.23 0.22 -0.68 16 8 C -0.19 -4.45 9.96 22.41 0.22 -4.23 16 9 C 0.19 6.25 6.27 38.14 0.24 6.49 16 10 N -0.67 -23.39 5.35 -317.21 -1.70 -25.09 16 11 C 0.72 31.37 8.53 179.05 1.53 32.90 16 12 O -0.62 -31.12 14.81 -4.00 -0.06 -31.18 16 13 N -0.66 -28.15 3.69 -877.59 -3.24 -31.39 16 14 C 0.09 3.88 7.69 83.09 0.64 4.52 16 15 C 0.22 10.46 1.41 -11.30 -0.02 10.45 16 16 O -0.58 -29.34 13.51 -148.98 -2.01 -31.35 16 17 C -0.55 -27.02 8.66 25.60 0.22 -26.80 16 18 H 0.07 3.46 7.82 -2.91 -0.02 3.44 16 19 C 0.04 1.75 5.33 84.66 0.45 2.21 16 20 N -0.91 -44.37 11.64 21.45 0.25 -44.12 16 21 Si 0.96 38.77 29.54 68.60 2.03 40.80 16 22 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 23 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16 24 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 25 C 0.13 5.77 8.03 83.17 0.67 6.43 16 26 C -0.19 -6.79 8.59 22.49 0.19 -6.59 16 27 H 0.12 0.93 7.90 -2.91 -0.02 0.90 16 28 H 0.12 1.03 8.06 -2.91 -0.02 1.00 16 29 H 0.11 1.97 8.06 -2.91 -0.02 1.95 16 30 H 0.09 1.16 7.38 -2.39 -0.02 1.15 16 31 H 0.08 1.25 7.66 -2.39 -0.02 1.23 16 32 H 0.16 2.16 6.29 -2.91 -0.02 2.14 16 33 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 34 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 35 H 0.42 12.30 8.54 -92.71 -0.79 11.50 16 36 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 37 H 0.09 3.60 8.10 -2.39 -0.02 3.58 16 38 H 0.38 19.36 7.11 -74.05 -0.53 18.83 16 39 H 0.27 12.71 8.31 -92.70 -0.77 11.94 16 40 H 0.10 4.14 8.10 -2.39 -0.02 4.12 16 41 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.11 4.51 6.43 -2.91 -0.02 4.49 16 Total: -1.00 -65.43 361.72 0.39 -65.04 By element: Atomic # 1 Polarization: 45.39 SS G_CDS: -0.26 Total: 45.13 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: 6.31 Total: 22.65 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -4.69 Total: -100.61 kcal Atomic # 8 Polarization: -70.00 SS G_CDS: -3.01 Total: -73.01 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -65.43 0.39 -65.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116756521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.189 kcal (2) G-P(sol) polarization free energy of solvation -65.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds