Wall clock time and date at job start Tue Mar 31 2020 12:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 108.74519 * 2 1 4 4 C 1.54225 * 108.77588 * 241.68191 * 2 1 3 5 5 N 1.44754 * 109.64656 * 159.68910 * 4 2 1 6 6 C 1.34773 * 119.58581 * 277.70315 * 5 4 2 7 7 O 1.21589 * 120.00177 * 175.05884 * 6 5 4 8 8 N 1.34780 * 120.00190 * 355.05992 * 6 5 4 9 9 C 1.46501 * 120.00258 * 185.05913 * 8 6 5 10 10 C 1.53000 * 109.47178 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.46742 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46919 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00026 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00097 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00470 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99856 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47226 * 90.00712 * 16 14 12 18 18 H 1.48504 * 109.47078 * 210.00063 * 16 14 12 19 19 H 1.48491 * 109.47211 * 330.00097 * 16 14 12 20 20 C 1.46296 * 120.82621 * 97.72080 * 5 4 2 21 21 C 1.53727 * 115.18452 * 317.03146 * 20 5 4 22 22 S 1.80018 * 110.86967 * 316.91251 * 21 20 5 23 23 O 1.42102 * 108.53666 * 329.86225 * 22 21 20 24 24 O 1.42093 * 108.51049 * 198.95331 * 22 21 20 25 25 C 1.45736 * 108.68716 * 118.26915 * 2 1 3 26 26 H 1.09005 * 109.47049 * 178.31717 * 1 2 3 27 27 H 1.08995 * 109.46988 * 298.31705 * 1 2 3 28 28 H 1.09000 * 109.46753 * 58.32012 * 1 2 3 29 29 H 1.08997 * 109.44099 * 39.64100 * 4 2 1 30 30 H 1.08996 * 109.44269 * 279.74392 * 4 2 1 31 31 H 0.97006 * 119.99886 * 5.06278 * 8 6 5 32 32 H 1.09001 * 109.46871 * 300.00291 * 9 8 6 33 33 H 1.09002 * 109.46899 * 60.00170 * 9 8 6 34 34 H 1.08996 * 109.47291 * 300.00387 * 10 9 8 35 35 H 1.09002 * 109.47008 * 60.00308 * 10 9 8 36 36 H 1.08996 * 109.47514 * 300.00214 * 11 10 9 37 37 H 1.09002 * 109.47147 * 60.00356 * 11 10 9 38 38 H 0.96991 * 120.00496 * 179.97438 * 15 14 12 39 39 H 1.09000 * 108.33883 * 78.51018 * 20 5 4 40 40 H 1.09003 * 108.33805 * 195.55317 * 20 5 4 41 41 H 1.09008 * 109.19915 * 77.24072 * 21 20 5 42 42 H 1.08997 * 109.19791 * 196.52861 * 21 20 5 43 43 H 1.09000 * 108.72241 * 307.47698 * 25 2 1 44 44 H 1.09005 * 108.72172 * 65.63307 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8803 1.0322 0.0000 4 6 2.0264 -0.6927 -1.2854 5 7 3.3935 -0.2995 -1.5533 6 6 3.6395 0.8688 -2.1787 7 8 4.7847 1.2494 -2.3274 8 7 2.6162 1.6152 -2.6392 9 6 2.8854 2.8282 -3.4155 10 6 1.5614 3.4830 -3.8141 11 6 1.8427 4.7494 -4.6253 12 6 0.5385 5.3947 -5.0174 13 1 -0.3974 4.9467 -4.7176 14 6 0.5401 6.5577 -5.7580 15 7 1.6796 7.1036 -6.1226 16 14 -1.0765 7.3580 -6.2434 17 1 -1.4872 8.3222 -5.1912 18 1 -0.9064 8.0752 -7.5326 19 1 -2.1211 6.3131 -6.3923 20 6 4.5114 -1.1545 -1.1540 21 6 4.3935 -1.7730 0.2484 22 16 3.8002 -0.5584 1.4372 23 8 4.2385 0.7289 1.0249 24 8 4.1197 -1.0135 2.7448 25 6 1.9969 -0.6538 1.2159 26 1 -0.3633 -1.0273 -0.0302 27 1 -0.3633 0.4875 0.9047 28 1 -0.3633 0.5397 -0.8746 29 1 1.3938 -0.3992 -2.1231 30 1 1.9785 -1.7739 -1.1566 31 1 1.7013 1.3494 -2.4567 32 1 3.4681 3.5239 -2.8118 33 1 3.4464 2.5680 -4.3131 34 1 0.9791 2.7870 -4.4179 35 1 1.0000 3.7431 -2.9167 36 1 2.4252 5.4455 -4.0219 37 1 2.4038 4.4888 -5.5227 38 1 1.6807 7.9216 -6.6439 39 1 4.6007 -1.9633 -1.8792 40 1 5.4262 -0.5630 -1.1921 41 1 3.6961 -2.6101 0.2135 42 1 5.3719 -2.1355 0.5637 43 1 1.5140 -0.1846 2.0730 44 1 1.7055 -1.7037 1.1826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116776734.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:28 Heat of formation + Delta-G solvation = -103.286421 kcal Electronic energy + Delta-G solvation = -25755.325736 eV Core-core repulsion = 22028.112127 eV Total energy + Delta-G solvation = -3727.213610 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.62931 -37.83409 -37.08485 -36.26002 -35.77542 -34.77395 -33.39179 -32.02843 -30.69563 -28.26276 -26.96115 -26.68823 -24.09660 -22.66177 -21.54508 -20.63184 -19.68299 -19.03887 -18.14455 -17.70258 -17.08905 -16.47717 -16.21934 -15.74989 -15.62942 -15.22219 -14.71345 -14.48278 -14.32543 -14.09036 -13.96129 -13.54538 -13.42847 -13.09269 -12.84211 -12.39267 -12.32211 -12.28768 -12.22503 -12.13951 -11.78517 -11.69807 -11.67493 -11.32351 -11.11903 -10.89777 -10.69755 -10.64805 -10.58578 -10.05682 -9.84596 -9.43338 -9.11317 -9.05978 -8.61312 -8.36021 -6.00565 -4.03687 -0.35474 2.30943 2.50212 3.26961 3.31182 3.31926 3.37581 3.39875 3.48474 3.93697 3.95818 4.02781 4.23021 4.41573 4.45157 4.55125 4.67135 4.76018 4.93445 5.08717 5.09827 5.16026 5.25548 5.35191 5.46706 5.52390 5.66324 5.71405 5.77446 5.84099 6.20268 6.24633 6.53341 6.64510 6.70273 6.95714 7.03650 7.65466 7.78732 7.98460 8.00796 8.39109 8.69424 9.03041 9.60350 11.10738 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023256 B = 0.002787 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.681626 B =10045.089184 C =10525.411384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 H 0.097 0.903 4 C 0.096 3.904 5 N -0.639 5.639 6 C 0.711 3.289 7 O -0.574 6.574 8 N -0.738 5.738 9 C 0.132 3.868 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.146 3.854 21 C -0.635 4.635 22 S 2.420 3.580 23 O -0.912 6.912 24 O -0.947 6.947 25 C -0.594 4.594 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.393 0.607 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.020 0.980 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.132 0.868 42 H 0.149 0.851 43 H 0.137 0.863 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.697 -23.601 14.334 27.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.129 4.129 3 H 0.115 0.885 4 C -0.028 4.028 5 N -0.378 5.378 6 C 0.413 3.587 7 O -0.451 6.451 8 N -0.393 5.393 9 C 0.009 3.991 10 C -0.158 4.158 11 C -0.014 4.014 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C 0.021 3.979 21 C -0.764 4.764 22 S 2.601 3.399 23 O -0.909 6.909 24 O -0.944 6.944 25 C -0.722 4.722 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.228 0.772 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.127 0.873 41 H 0.151 0.849 42 H 0.167 0.833 43 H 0.155 0.845 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.769 -22.627 14.646 26.965 hybrid contribution -1.875 -0.356 -0.512 1.976 sum -1.106 -22.984 14.134 27.005 Atomic orbital electron populations 1.21866 0.92550 1.02475 1.03201 1.20203 0.98549 1.01929 0.92202 0.88490 1.21769 0.83340 1.00522 0.97192 1.46773 1.05817 1.21532 1.63645 1.15765 0.85377 0.79399 0.78182 1.90918 1.20213 1.71433 1.62488 1.45495 1.07650 1.27826 1.58368 1.21566 0.99412 0.83743 0.94362 1.21887 0.94045 0.99517 1.00336 1.19026 0.97244 0.90404 0.94701 1.21195 0.92639 1.08489 1.33702 0.92689 1.25027 0.96218 0.97178 0.96050 1.69961 1.25100 1.20172 1.37983 0.86590 0.83927 0.79487 0.77932 1.20673 1.21240 1.19933 1.20635 0.91546 0.94776 0.90944 1.30720 1.14330 1.18114 1.13205 1.08035 0.78831 0.77116 0.75946 1.93669 1.78681 1.35728 1.82835 1.93600 1.82567 1.83058 1.35145 1.29067 1.25747 1.10329 1.07068 0.92095 0.91842 0.91348 0.88877 0.89194 0.77218 0.91575 0.91918 0.92861 0.92748 0.96171 0.96247 0.92925 0.90382 0.87325 0.84929 0.83252 0.84477 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 8.94 37.16 0.33 -0.40 16 2 C -0.11 -0.71 2.17 -93.41 -0.20 -0.92 16 3 H 0.10 0.91 7.53 -51.93 -0.39 0.52 16 4 C 0.10 0.62 4.37 -4.34 -0.02 0.60 16 5 N -0.64 -6.56 2.02 -179.74 -0.36 -6.93 16 6 C 0.71 10.85 7.97 -86.92 -0.69 10.16 16 7 O -0.57 -11.32 15.66 5.29 0.08 -11.24 16 8 N -0.74 -10.67 5.40 -65.22 -0.35 -11.02 16 9 C 0.13 2.35 5.68 -4.04 -0.02 2.33 16 10 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 11 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 12 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 13 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 16 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.15 1.24 5.60 -3.77 -0.02 1.22 16 21 C -0.63 -3.39 5.87 37.54 0.22 -3.17 16 22 S 2.42 20.71 5.12 -107.50 -0.55 20.15 16 23 O -0.91 -12.54 16.54 -57.83 -0.96 -13.50 16 24 O -0.95 -10.92 18.09 -57.83 -1.05 -11.97 16 25 C -0.59 -3.14 4.82 33.73 0.16 -2.97 16 26 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 0.33 8.04 -51.93 -0.42 -0.09 16 28 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 29 H 0.09 0.55 6.40 -51.93 -0.33 0.22 16 30 H 0.09 0.28 7.63 -51.93 -0.40 -0.12 16 31 H 0.39 4.44 6.22 -40.82 -0.25 4.19 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.11 1.21 6.89 -51.93 -0.36 0.85 16 41 H 0.13 0.22 7.92 -51.81 -0.41 -0.19 16 42 H 0.15 0.58 8.14 -51.82 -0.42 0.16 16 43 H 0.14 0.62 7.97 -51.91 -0.41 0.21 16 44 H 0.13 0.24 8.07 -51.90 -0.42 -0.18 16 LS Contribution 361.34 15.07 5.45 5.45 Total: -1.00 -39.21 361.34 -10.12 -49.33 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -7.16 Total: -2.18 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -0.93 Total: -8.39 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.02 Total: -43.99 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -1.92 Total: -36.70 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 20.71 SS G_CDS: -0.55 Total: 20.15 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -39.21 -10.12 -49.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116776734.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.960 kcal (2) G-P(sol) polarization free energy of solvation -39.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds