Wall clock time and date at job start Tue Mar 31 2020 12:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 108.74519 * 2 1 4 4 C 1.54225 * 108.77588 * 241.68191 * 2 1 3 5 5 N 1.44754 * 109.64656 * 159.68910 * 4 2 1 6 6 C 1.34773 * 119.58581 * 277.70315 * 5 4 2 7 7 O 1.21589 * 120.00177 * 175.05884 * 6 5 4 8 8 N 1.34780 * 120.00190 * 355.05992 * 6 5 4 9 9 C 1.46501 * 120.00258 * 185.05913 * 8 6 5 10 10 C 1.53000 * 109.47178 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.46742 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46919 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00026 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00097 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00470 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99856 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47226 * 90.00712 * 16 14 12 18 18 H 1.48504 * 109.47078 * 210.00063 * 16 14 12 19 19 H 1.48491 * 109.47211 * 330.00097 * 16 14 12 20 20 C 1.46296 * 120.82621 * 97.72080 * 5 4 2 21 21 C 1.53727 * 115.18452 * 317.03146 * 20 5 4 22 22 S 1.80018 * 110.86967 * 316.91251 * 21 20 5 23 23 O 1.42102 * 108.53666 * 329.86225 * 22 21 20 24 24 O 1.42093 * 108.51049 * 198.95331 * 22 21 20 25 25 C 1.45736 * 108.68716 * 118.26915 * 2 1 3 26 26 H 1.09005 * 109.47049 * 178.31717 * 1 2 3 27 27 H 1.08995 * 109.46988 * 298.31705 * 1 2 3 28 28 H 1.09000 * 109.46753 * 58.32012 * 1 2 3 29 29 H 1.08997 * 109.44099 * 39.64100 * 4 2 1 30 30 H 1.08996 * 109.44269 * 279.74392 * 4 2 1 31 31 H 0.97006 * 119.99886 * 5.06278 * 8 6 5 32 32 H 1.09001 * 109.46871 * 300.00291 * 9 8 6 33 33 H 1.09002 * 109.46899 * 60.00170 * 9 8 6 34 34 H 1.08996 * 109.47291 * 300.00387 * 10 9 8 35 35 H 1.09002 * 109.47008 * 60.00308 * 10 9 8 36 36 H 1.08996 * 109.47514 * 300.00214 * 11 10 9 37 37 H 1.09002 * 109.47147 * 60.00356 * 11 10 9 38 38 H 0.96991 * 120.00496 * 179.97438 * 15 14 12 39 39 H 1.09000 * 108.33883 * 78.51018 * 20 5 4 40 40 H 1.09003 * 108.33805 * 195.55317 * 20 5 4 41 41 H 1.09008 * 109.19915 * 77.24072 * 21 20 5 42 42 H 1.08997 * 109.19791 * 196.52861 * 21 20 5 43 43 H 1.09000 * 108.72241 * 307.47698 * 25 2 1 44 44 H 1.09005 * 108.72172 * 65.63307 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8803 1.0322 0.0000 4 6 2.0264 -0.6927 -1.2854 5 7 3.3935 -0.2995 -1.5533 6 6 3.6395 0.8688 -2.1787 7 8 4.7847 1.2494 -2.3274 8 7 2.6162 1.6152 -2.6392 9 6 2.8854 2.8282 -3.4155 10 6 1.5614 3.4830 -3.8141 11 6 1.8427 4.7494 -4.6253 12 6 0.5385 5.3947 -5.0174 13 1 -0.3974 4.9467 -4.7176 14 6 0.5401 6.5577 -5.7580 15 7 1.6796 7.1036 -6.1226 16 14 -1.0765 7.3580 -6.2434 17 1 -1.4872 8.3222 -5.1912 18 1 -0.9064 8.0752 -7.5326 19 1 -2.1211 6.3131 -6.3923 20 6 4.5114 -1.1545 -1.1540 21 6 4.3935 -1.7730 0.2484 22 16 3.8002 -0.5584 1.4372 23 8 4.2385 0.7289 1.0249 24 8 4.1197 -1.0135 2.7448 25 6 1.9969 -0.6538 1.2159 26 1 -0.3633 -1.0273 -0.0302 27 1 -0.3633 0.4875 0.9047 28 1 -0.3633 0.5397 -0.8746 29 1 1.3938 -0.3992 -2.1231 30 1 1.9785 -1.7739 -1.1566 31 1 1.7013 1.3494 -2.4567 32 1 3.4681 3.5239 -2.8118 33 1 3.4464 2.5680 -4.3131 34 1 0.9791 2.7870 -4.4179 35 1 1.0000 3.7431 -2.9167 36 1 2.4252 5.4455 -4.0219 37 1 2.4038 4.4888 -5.5227 38 1 1.6807 7.9216 -6.6439 39 1 4.6007 -1.9633 -1.8792 40 1 5.4262 -0.5630 -1.1921 41 1 3.6961 -2.6101 0.2135 42 1 5.3719 -2.1355 0.5637 43 1 1.5140 -0.1846 2.0730 44 1 1.7055 -1.7037 1.1826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116776734.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:27 Heat of formation + Delta-G solvation = -134.159297 kcal Electronic energy + Delta-G solvation = -25756.664485 eV Core-core repulsion = 22028.112127 eV Total energy + Delta-G solvation = -3728.552358 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.60602 -38.69450 -37.82993 -37.10433 -37.03310 -35.70818 -35.17895 -33.34389 -31.94879 -28.70033 -28.50399 -27.47659 -25.43212 -23.97390 -22.29636 -22.17749 -20.72171 -19.70411 -19.17406 -18.54507 -18.25893 -17.76178 -17.14712 -16.77142 -16.60111 -16.42963 -15.92508 -15.86001 -15.49324 -14.90856 -14.60841 -14.52532 -14.24696 -14.07995 -13.75456 -13.66259 -13.46694 -13.24381 -13.07784 -13.01395 -12.80571 -12.75696 -12.70955 -12.50497 -12.34750 -12.27839 -11.86217 -11.66892 -11.65160 -11.56793 -11.26604 -11.17400 -11.07080 -10.53706 -10.20984 -9.62424 -8.17338 -6.28992 -0.94772 1.42933 1.44705 1.52485 1.55836 1.82298 2.12346 2.43428 2.76695 2.87563 2.98359 3.16497 3.48525 3.53404 3.84330 3.91434 4.08790 4.17910 4.22503 4.25091 4.34332 4.51039 4.55574 4.58011 4.65219 4.78660 4.80082 4.86452 4.97474 5.02266 5.09665 5.18567 5.22612 5.43023 5.49089 5.55378 5.57663 5.73033 5.80892 5.86341 6.24145 6.88119 6.95765 7.40575 7.55190 8.94969 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023256 B = 0.002787 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.681626 B =10045.089184 C =10525.411384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 H 0.059 0.941 4 C 0.082 3.918 5 N -0.629 5.629 6 C 0.704 3.296 7 O -0.630 6.630 8 N -0.728 5.728 9 C 0.147 3.853 10 C -0.099 4.099 11 C 0.023 3.977 12 C -0.538 4.538 13 H 0.069 0.931 14 C -0.005 4.005 15 N -0.937 5.937 16 Si 0.968 3.032 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.257 1.257 20 C 0.136 3.864 21 C -0.610 4.610 22 S 2.397 3.603 23 O -0.984 6.984 24 O -0.989 6.989 25 C -0.574 4.574 26 H 0.089 0.911 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.143 0.857 31 H 0.411 0.589 32 H 0.039 0.961 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.066 0.934 36 H -0.012 1.012 37 H -0.007 1.007 38 H 0.263 0.737 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.189 0.811 42 H 0.165 0.835 43 H 0.146 0.854 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 -27.261 14.619 31.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.077 0.923 4 C -0.040 4.040 5 N -0.366 5.366 6 C 0.405 3.595 7 O -0.511 6.511 8 N -0.385 5.385 9 C 0.022 3.978 10 C -0.136 4.136 11 C -0.014 4.014 12 C -0.576 4.576 13 H 0.087 0.913 14 C -0.203 4.203 15 N -0.577 5.577 16 Si 0.793 3.207 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.181 1.181 20 C 0.012 3.988 21 C -0.741 4.741 22 S 2.586 3.414 23 O -0.981 6.981 24 O -0.986 6.986 25 C -0.705 4.705 26 H 0.108 0.892 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.161 0.839 31 H 0.249 0.751 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.007 0.993 37 H 0.012 0.988 38 H 0.071 0.929 39 H 0.129 0.871 40 H 0.088 0.912 41 H 0.207 0.793 42 H 0.183 0.817 43 H 0.164 0.836 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.752 -26.324 15.005 30.425 hybrid contribution -0.782 0.711 -0.599 1.215 sum -3.534 -25.614 14.406 29.599 Atomic orbital electron populations 1.21877 0.90747 1.04308 1.02975 1.20199 0.99817 1.00126 0.92894 0.92279 1.22257 0.80831 1.03640 0.97281 1.46757 1.08162 1.19645 1.61997 1.16042 0.84409 0.80665 0.78347 1.90880 1.22437 1.73107 1.64663 1.45117 1.08678 1.26704 1.57982 1.21104 0.98163 0.84691 0.93856 1.21578 0.94828 0.97154 1.00082 1.18942 0.95988 0.92507 0.94007 1.21677 0.93735 1.08811 1.33417 0.91287 1.26048 1.00144 0.98004 0.96063 1.70119 1.27825 1.20783 1.38968 0.85400 0.79282 0.78634 0.77424 1.19992 1.21170 1.18107 1.20851 0.89605 0.94720 0.93643 1.30518 1.16824 1.17699 1.09106 1.08198 0.80785 0.76598 0.75795 1.93598 1.80964 1.39936 1.83631 1.93545 1.84093 1.83251 1.37669 1.28853 1.20977 1.13805 1.06856 0.89163 0.92158 0.91695 0.88036 0.83921 0.75128 0.94240 0.93141 0.90826 0.91543 0.99338 0.98834 0.92871 0.87096 0.91183 0.79342 0.81673 0.83647 0.80035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.94 71.98 0.64 -0.22 16 2 C -0.11 -1.10 2.17 -12.60 -0.03 -1.13 16 3 H 0.06 1.08 7.53 -2.39 -0.02 1.07 16 4 C 0.08 0.70 4.37 87.12 0.38 1.08 16 5 N -0.63 -11.81 2.02 -840.84 -1.70 -13.52 16 6 C 0.70 21.92 7.97 179.05 1.43 23.35 16 7 O -0.63 -26.52 15.66 -4.00 -0.06 -26.58 16 8 N -0.73 -21.14 5.40 -478.53 -2.59 -23.72 16 9 C 0.15 5.46 5.68 86.38 0.49 5.95 16 10 C -0.10 -3.81 5.27 30.59 0.16 -3.65 16 11 C 0.02 1.22 4.97 29.85 0.15 1.37 16 12 C -0.54 -29.96 9.11 25.60 0.23 -29.73 16 13 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 14 C -0.01 -0.30 5.46 84.65 0.46 0.17 16 15 N -0.94 -57.70 13.29 21.45 0.28 -57.42 16 16 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 20 C 0.14 2.03 5.60 86.66 0.48 2.52 16 21 C -0.61 -4.37 5.87 72.23 0.42 -3.95 16 22 S 2.40 39.00 5.12 -56.49 -0.29 38.71 16 23 O -0.98 -29.21 16.54 -127.37 -2.11 -31.32 16 24 O -0.99 -22.58 18.09 -127.37 -2.30 -24.88 16 25 C -0.57 -3.93 4.82 69.76 0.34 -3.60 16 26 H 0.09 0.07 8.14 -2.38 -0.02 0.05 16 27 H 0.06 0.43 8.04 -2.39 -0.02 0.42 16 28 H 0.06 0.47 8.12 -2.39 -0.02 0.45 16 29 H 0.10 0.75 6.40 -2.39 -0.02 0.74 16 30 H 0.14 -0.21 7.63 -2.39 -0.02 -0.22 16 31 H 0.41 8.72 6.22 -92.70 -0.58 8.14 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 33 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 36 H -0.01 -0.69 8.14 -2.39 -0.02 -0.70 16 37 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 38 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 1.63 6.89 -2.39 -0.02 1.62 16 41 H 0.19 -0.75 7.92 -2.46 -0.02 -0.77 16 42 H 0.17 0.80 8.14 -2.46 -0.02 0.78 16 43 H 0.15 0.89 7.97 -2.40 -0.02 0.87 16 44 H 0.18 -0.64 8.07 -2.40 -0.02 -0.66 16 Total: -1.00 -94.29 361.34 -1.16 -95.45 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 0.41 Total: 5.43 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: 5.17 Total: -7.84 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -4.00 Total: -94.66 kcal Atomic # 8 Polarization: -78.31 SS G_CDS: -4.47 Total: -82.78 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 39.00 SS G_CDS: -0.29 Total: 38.71 kcal Total: -94.29 -1.16 -95.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116776734.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.709 kcal (2) G-P(sol) polarization free energy of solvation -94.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds