Wall clock time and date at job start Tue Mar 31 2020 12:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 108.79421 * 2 1 4 4 C 1.53612 * 108.85099 * 118.42988 * 2 1 3 5 5 N 1.43380 * 114.08392 * 79.17645 * 4 2 1 6 6 C 1.34777 * 120.82298 * 280.85487 * 5 4 2 7 7 O 1.21591 * 119.99867 * 359.72957 * 6 5 4 8 8 N 1.34774 * 120.00504 * 179.72132 * 6 5 4 9 9 C 1.46497 * 120.00283 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47298 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.47355 * 180.02562 * 10 9 8 12 12 C 1.50694 * 109.47168 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.49443 * 118.36299 * 100.59062 * 5 4 2 21 21 C 1.44432 * 110.91869 * 278.63745 * 20 5 4 22 22 S 1.82271 * 112.51066 * 60.63143 * 21 20 5 23 23 O 1.42097 * 108.81400 * 36.54907 * 22 21 20 24 24 O 1.42093 * 108.81853 * 168.23207 * 22 21 20 25 25 C 1.54764 * 108.82810 * 241.56558 * 2 1 3 26 26 H 1.09004 * 109.47321 * 178.43504 * 1 2 3 27 27 H 1.09001 * 109.47420 * 298.43664 * 1 2 3 28 28 H 1.09002 * 109.47241 * 58.43758 * 1 2 3 29 29 H 1.08997 * 108.29061 * 318.09982 * 4 2 1 30 30 H 1.08996 * 108.61763 * 200.49936 * 4 2 1 31 31 H 0.96997 * 120.00043 * 0.02562 * 8 6 5 32 32 H 1.09002 * 109.46745 * 60.00812 * 9 8 6 33 33 H 1.08992 * 109.47732 * 300.00771 * 9 8 6 34 34 H 1.09002 * 109.46807 * 60.00547 * 10 9 8 35 35 H 1.08998 * 109.47285 * 300.00150 * 10 9 8 36 36 H 1.09007 * 109.46922 * 59.99890 * 11 10 9 37 37 H 1.09003 * 109.46836 * 300.00646 * 11 10 9 38 38 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 39 39 H 1.08995 * 109.18500 * 39.01173 * 20 5 4 40 40 H 1.09002 * 109.18536 * 158.31406 * 20 5 4 41 41 H 1.09003 * 108.87054 * 181.40887 * 21 20 5 42 42 H 1.09000 * 108.87855 * 299.94586 * 21 20 5 43 43 H 1.08999 * 108.88996 * 77.15523 * 25 2 1 44 44 H 1.08996 * 108.81301 * 318.62234 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8811 1.0319 0.0000 4 6 2.0263 -0.6921 1.2784 5 7 1.9827 -2.1242 1.2231 6 6 0.8250 -2.7877 1.4129 7 8 -0.1987 -2.1718 1.6391 8 7 0.8019 -4.1338 1.3517 9 6 -0.4564 -4.8550 1.5585 10 6 -0.2075 -6.3598 1.4380 11 6 -1.5218 -7.1130 1.6534 12 6 -1.2765 -8.5952 1.5352 13 1 -0.2826 -8.9633 1.3278 14 6 -2.3210 -9.4815 1.6921 15 7 -3.5313 -9.0333 1.9452 16 14 -2.0171 -11.3187 1.5449 17 1 -2.1993 -11.7391 0.1324 18 1 -0.6307 -11.6274 1.9784 19 1 -2.9798 -12.0502 2.4072 20 6 3.2515 -2.8628 0.9439 21 6 3.5352 -2.8835 -0.4722 22 16 3.7407 -1.2111 -1.1672 23 8 4.3979 -0.3939 -0.2083 24 8 4.2796 -1.3222 -2.4773 25 6 2.0294 -0.6975 -1.2881 26 1 -0.3634 -1.0273 -0.0281 27 1 -0.3634 0.4894 0.9037 28 1 -0.3634 0.5379 -0.8757 29 1 1.4078 -0.3569 2.1110 30 1 3.0543 -0.3819 1.4653 31 1 1.6185 -4.6252 1.1715 32 1 -1.1809 -4.5448 0.8055 33 1 -0.8453 -4.6299 2.5515 34 1 0.5169 -6.6698 2.1912 35 1 0.1816 -6.5854 0.4451 36 1 -2.2459 -6.8030 0.8999 37 1 -1.9113 -6.8875 2.6461 38 1 -4.2662 -9.6568 2.0552 39 1 4.0732 -2.3736 1.4668 40 1 3.1565 -3.8870 1.3046 41 1 4.4512 -3.4501 -0.6399 42 1 2.7142 -3.3802 -0.9891 43 1 1.9263 -0.0076 -2.1257 44 1 1.4101 -1.5746 -1.4756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116776737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:31 Heat of formation + Delta-G solvation = -126.112589 kcal Electronic energy + Delta-G solvation = -25751.196273 eV Core-core repulsion = 22022.992846 eV Total energy + Delta-G solvation = -3728.203427 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.61367 -38.66471 -37.70517 -37.07463 -36.89360 -36.00084 -34.96614 -32.92412 -32.47733 -29.01436 -28.65153 -27.14141 -25.00171 -24.53684 -22.29105 -22.21444 -20.32930 -19.80345 -19.27853 -18.51457 -18.02426 -17.51037 -17.27510 -16.96344 -16.60410 -16.39435 -16.25431 -15.47835 -15.38749 -15.30895 -14.77598 -14.29544 -14.26528 -13.95564 -13.81396 -13.66521 -13.51680 -13.31692 -13.19093 -13.08268 -12.98240 -12.74102 -12.52239 -12.46641 -12.35290 -12.22614 -11.90077 -11.63398 -11.56135 -11.41097 -11.24097 -11.22247 -11.04723 -10.54245 -10.14567 -9.65979 -8.18618 -6.29785 -0.92611 1.42690 1.43647 1.53188 1.55151 1.73553 2.12101 2.42362 2.69034 2.82684 2.93993 3.15556 3.50840 3.68471 3.86405 3.90343 4.07747 4.09357 4.19586 4.23841 4.26874 4.57155 4.58957 4.67615 4.70508 4.72196 4.82296 4.89868 4.99070 5.01431 5.06777 5.13310 5.19160 5.43710 5.50378 5.53062 5.61277 5.73353 5.85742 5.88468 6.23765 6.87606 6.94537 7.39947 7.58429 8.93406 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022019 B = 0.002737 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.297218 B =10226.408161 C =10896.469924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 H 0.109 0.891 4 C 0.093 3.907 5 N -0.628 5.628 6 C 0.700 3.300 7 O -0.613 6.613 8 N -0.731 5.731 9 C 0.150 3.850 10 C -0.101 4.101 11 C 0.024 3.976 12 C -0.539 4.539 13 H 0.067 0.933 14 C -0.004 4.004 15 N -0.935 5.935 16 Si 0.965 3.035 17 H -0.273 1.273 18 H -0.259 1.259 19 H -0.287 1.287 20 C 0.113 3.887 21 C -0.619 4.619 22 S 2.449 3.551 23 O -0.955 6.955 24 O -0.981 6.981 25 C -0.620 4.620 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.125 0.875 31 H 0.410 0.590 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.069 0.931 36 H -0.008 1.008 37 H -0.009 1.009 38 H 0.263 0.737 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.183 0.817 42 H 0.147 0.853 43 H 0.149 0.851 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.309 16.903 -5.082 25.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.096 4.096 3 H 0.127 0.873 4 C -0.031 4.031 5 N -0.366 5.366 6 C 0.402 3.598 7 O -0.493 6.493 8 N -0.388 5.388 9 C 0.025 3.975 10 C -0.139 4.139 11 C -0.014 4.014 12 C -0.577 4.577 13 H 0.086 0.914 14 C -0.201 4.201 15 N -0.576 5.576 16 Si 0.790 3.210 17 H -0.199 1.199 18 H -0.183 1.183 19 H -0.212 1.212 20 C -0.009 4.009 21 C -0.750 4.750 22 S 2.634 3.366 23 O -0.952 6.952 24 O -0.978 6.978 25 C -0.750 4.750 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.143 0.857 31 H 0.248 0.752 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.010 0.990 37 H 0.009 0.991 38 H 0.071 0.929 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.200 0.800 42 H 0.166 0.834 43 H 0.167 0.833 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 18.190 17.757 -5.121 25.931 hybrid contribution -1.193 -1.561 -0.060 1.965 sum 16.997 16.196 -5.181 24.043 Atomic orbital electron populations 1.21959 0.94478 1.02498 1.01098 1.21569 0.97019 1.00531 0.90464 0.87296 1.21488 1.05158 0.78679 0.97816 1.47276 1.07090 1.06531 1.75705 1.16040 0.83638 0.82059 0.78056 1.90906 1.33447 1.67792 1.57110 1.45213 1.12546 1.04474 1.76613 1.21061 0.84911 0.91434 1.00115 1.21590 0.98929 0.91376 1.02020 1.18934 0.93056 0.94420 0.94986 1.21692 0.95173 0.92721 1.48155 0.91445 1.26012 0.94904 1.04315 0.94879 1.70112 1.00986 1.36468 1.50008 0.85441 0.78437 0.78993 0.78126 1.19893 1.18325 1.21249 1.20317 0.86478 1.00930 0.93202 1.29213 1.14787 1.23630 1.07374 1.06886 0.76971 0.78582 0.74169 1.93514 1.72912 1.66362 1.62458 1.93573 1.77228 1.87156 1.39828 1.30564 1.24256 1.12685 1.07496 0.92921 0.93033 0.92721 0.90580 0.85698 0.75209 0.93351 0.93580 0.91385 0.91240 0.98993 0.99063 0.92877 0.85999 0.86570 0.79995 0.83448 0.83331 0.84711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.03 71.98 0.58 -2.35 16 2 C -0.08 -1.15 2.82 -9.99 -0.03 -1.17 16 3 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 4 C 0.09 1.52 4.42 87.16 0.39 1.90 16 5 N -0.63 -10.44 2.34 -853.47 -2.00 -12.44 16 6 C 0.70 17.62 7.89 179.05 1.41 19.03 16 7 O -0.61 -20.65 13.12 -4.00 -0.05 -20.70 16 8 N -0.73 -17.37 5.45 -478.55 -2.61 -19.98 16 9 C 0.15 4.85 5.67 86.38 0.49 5.34 16 10 C -0.10 -3.61 5.27 30.59 0.16 -3.45 16 11 C 0.02 1.19 4.97 29.85 0.15 1.34 16 12 C -0.54 -29.18 9.11 25.60 0.23 -28.95 16 13 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 14 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 15 N -0.94 -56.28 13.29 21.45 0.28 -55.99 16 16 Si 0.97 42.84 29.54 68.60 2.03 44.86 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 19 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 20 C 0.11 0.96 5.19 83.22 0.43 1.40 16 21 C -0.62 -4.03 5.72 69.40 0.40 -3.64 16 22 S 2.45 30.29 5.20 -56.49 -0.29 30.00 16 23 O -0.96 -15.57 14.89 -127.41 -1.90 -17.47 16 24 O -0.98 -19.84 18.10 -127.41 -2.31 -22.15 16 25 C -0.62 -7.63 5.20 72.58 0.38 -7.26 16 26 H 0.05 1.39 5.55 -2.38 -0.01 1.37 16 27 H 0.05 1.14 8.03 -2.39 -0.02 1.12 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.08 1.49 7.48 -2.39 -0.02 1.47 16 30 H 0.13 1.60 5.76 -2.39 -0.01 1.59 16 31 H 0.41 6.78 6.13 -92.71 -0.57 6.22 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 36 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 37 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 38 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 39 H 0.12 0.64 7.64 -2.39 -0.02 0.62 16 40 H 0.12 0.67 6.10 -2.39 -0.01 0.65 16 41 H 0.18 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.15 0.78 7.85 -2.39 -0.02 0.76 16 43 H 0.15 1.42 8.14 -2.64 -0.02 1.40 16 44 H 0.13 1.61 7.55 -2.64 -0.02 1.59 16 Total: -1.00 -79.64 352.56 -1.37 -81.02 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.43 Total: 10.40 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: 5.05 Total: -17.54 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -4.33 Total: -88.41 kcal Atomic # 8 Polarization: -56.06 SS G_CDS: -4.26 Total: -60.32 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 30.29 SS G_CDS: -0.29 Total: 30.00 kcal Total: -79.64 -1.37 -81.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116776737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.096 kcal (2) G-P(sol) polarization free energy of solvation -79.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds