Wall clock time and date at job start Tue Mar 31 2020 12:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00462 * 2 1 4 4 C 1.52994 * 109.47208 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47394 * 64.99959 * 4 3 2 6 6 C 1.42895 * 114.00162 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.47197 * 30.00300 * 6 5 4 8 8 C 1.52997 * 109.47636 * 270.00364 * 6 5 4 9 9 C 1.50700 * 109.47266 * 149.99637 * 6 5 4 10 10 N 1.30602 * 126.15810 * 45.02831 * 9 6 5 11 11 N 1.28666 * 109.52697 * 179.97438 * 10 9 6 12 12 C 1.31561 * 109.19158 * 359.97438 * 11 10 9 13 13 C 1.47282 * 126.39097 * 180.02562 * 12 11 10 14 14 C 1.40221 * 119.90779 * 179.74984 * 13 12 11 15 15 C 1.36130 * 120.09663 * 180.27681 * 14 13 12 16 16 C 1.41001 * 119.90328 * 0.02562 * 15 14 13 17 17 C 1.40893 * 120.09304 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00165 * 24.76780 * 17 16 15 19 19 C 1.40038 * 120.00105 * 204.77335 * 17 16 15 20 20 N 1.30778 * 120.00289 * 17.96756 * 19 17 16 21 21 Si 1.86806 * 120.00201 * 197.97280 * 19 17 16 22 22 H 1.48502 * 109.47262 * 89.99643 * 21 19 17 23 23 H 1.48500 * 109.46764 * 209.99876 * 21 19 17 24 24 H 1.48498 * 109.46505 * 329.99578 * 21 19 17 25 25 C 1.41008 * 119.81596 * 359.97438 * 16 15 14 26 26 C 1.36131 * 119.90193 * 0.02562 * 25 16 15 27 27 O 1.34347 * 126.16473 * 225.29659 * 9 6 5 28 28 H 1.08997 * 109.47361 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46775 * 300.00039 * 1 2 3 30 30 H 1.09000 * 109.47266 * 59.99625 * 1 2 3 31 31 H 1.09003 * 109.46952 * 59.99672 * 3 2 1 32 32 H 1.09003 * 109.46774 * 300.00038 * 3 2 1 33 33 H 1.08997 * 109.47230 * 304.99651 * 4 3 2 34 34 H 1.09009 * 109.46992 * 185.00005 * 4 3 2 35 35 H 1.08992 * 109.47498 * 59.99521 * 8 6 5 36 36 H 1.09002 * 109.47520 * 180.02562 * 8 6 5 37 37 H 1.09011 * 109.46553 * 299.99924 * 8 6 5 38 38 H 1.07996 * 119.95117 * 0.27564 * 14 13 12 39 39 H 1.08001 * 120.04493 * 180.02562 * 15 14 13 40 40 H 0.96993 * 120.00902 * 179.97438 * 20 19 17 41 41 H 1.08003 * 120.05249 * 179.97438 * 25 16 15 42 42 H 1.07998 * 119.95168 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9649 0.5795 -1.2220 6 6 5.3812 0.4199 -1.3250 7 1 5.8048 0.2833 -0.3300 8 6 5.9892 1.6663 -1.9714 9 6 5.6903 -0.7872 -2.1726 10 7 5.1230 -1.0979 -3.3072 11 7 5.6297 -2.1921 -3.7559 12 6 6.5465 -2.6208 -2.9155 13 6 7.3626 -3.8384 -3.0589 14 6 8.3096 -4.1650 -2.0778 15 6 9.0699 -5.2865 -2.2093 16 6 8.9044 -6.1199 -3.3346 17 6 9.6896 -7.2814 -3.4750 18 1 10.1087 -7.7587 -2.6017 19 6 9.9266 -7.8167 -4.7472 20 7 9.7360 -7.0817 -5.8119 21 14 10.5148 -9.5810 -4.9234 22 1 9.3420 -10.4852 -5.0337 23 1 11.3515 -9.7041 -6.1440 24 1 11.3186 -9.9559 -3.7323 25 6 7.9510 -5.7878 -4.3189 26 6 7.1948 -4.6644 -4.1795 27 8 6.5956 -1.7401 -1.8947 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8514 0.5681 0.8409 34 1 3.9786 2.1764 0.0889 35 1 5.7656 2.5393 -1.3584 36 1 7.0695 1.5444 -2.0504 37 1 5.5655 1.8029 -2.9664 38 1 8.4360 -3.5259 -1.2165 39 1 9.7988 -5.5375 -1.4529 40 1 9.9005 -7.4522 -6.6930 41 1 7.8213 -6.4232 -5.1825 42 1 6.4640 -4.4095 -4.9327 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117239689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:35 Heat of formation + Delta-G solvation = -39.803247 kcal Electronic energy + Delta-G solvation = -25238.665503 eV Core-core repulsion = 21378.760779 eV Total energy + Delta-G solvation = -3859.904724 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.27477 -38.87296 -37.79225 -37.56654 -35.35715 -34.24142 -32.89425 -31.06219 -29.92497 -29.70679 -28.74965 -26.52323 -25.92941 -24.32207 -22.99897 -22.64257 -21.64380 -20.70495 -20.42262 -17.64464 -17.37371 -17.06056 -16.84832 -16.49429 -16.04832 -15.73055 -15.43523 -15.10823 -14.98946 -14.50020 -14.13634 -13.47720 -13.16352 -13.06940 -12.88935 -12.61498 -12.37038 -12.27910 -12.06125 -11.90579 -11.69699 -11.61610 -11.42944 -11.34295 -11.23010 -11.18267 -11.02406 -10.83414 -10.26358 -10.06719 -9.97268 -9.90142 -9.65145 -9.57818 -9.07473 -7.83774 -7.47160 -7.14642 -4.69804 1.45853 2.42898 2.64274 2.87302 2.90509 2.93183 2.95353 3.42458 3.52566 3.66119 3.72243 4.35513 4.40178 4.60783 4.79538 4.81635 4.94579 5.01306 5.08309 5.14166 5.20728 5.29248 5.40026 5.42013 5.47678 5.48514 5.55049 5.90625 5.99340 6.06935 6.18467 6.20281 6.40285 6.68925 6.74897 6.86096 6.90166 6.98574 7.03715 7.32757 7.54174 7.72350 7.79873 7.92117 8.27771 8.48426 8.60549 9.10140 9.75231 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025441 B = 0.002250 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.300499 B =12443.394184 C =12814.268974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.064 3.936 4 C 0.060 3.940 5 O -0.355 6.355 6 C 0.200 3.800 7 H 0.085 0.915 8 C -0.167 4.167 9 C 0.097 3.903 10 N -0.249 5.249 11 N -0.336 5.336 12 C 0.274 3.726 13 C -0.196 4.196 14 C -0.039 4.039 15 C -0.230 4.230 16 C 0.127 3.873 17 C -0.427 4.427 18 H 0.089 0.911 19 C 0.071 3.929 20 N -0.760 5.760 21 Si 0.918 3.082 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.178 4.178 26 C -0.034 4.034 27 O -0.232 6.232 28 H 0.086 0.914 29 H 0.038 0.962 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.291 0.709 41 H 0.126 0.874 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.097 12.719 9.625 17.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.273 6.273 6 C 0.141 3.859 7 H 0.103 0.897 8 C -0.225 4.225 9 C -0.114 4.114 10 N -0.097 5.097 11 N -0.184 5.184 12 C 0.074 3.926 13 C -0.201 4.201 14 C -0.059 4.059 15 C -0.249 4.249 16 C 0.123 3.877 17 C -0.454 4.454 18 H 0.107 0.893 19 C -0.152 4.152 20 N -0.382 5.382 21 Si 0.741 3.259 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.182 1.182 25 C -0.197 4.197 26 C -0.054 4.054 27 O -0.115 6.115 28 H 0.105 0.895 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.102 0.898 41 H 0.143 0.857 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.895 12.592 8.168 17.447 hybrid contribution 0.967 -0.412 1.059 1.492 sum -7.929 12.180 9.227 17.215 Atomic orbital electron populations 1.22745 0.81044 1.02985 0.99716 1.88011 1.19623 1.27071 1.95329 1.22539 0.92099 0.85749 1.00913 1.22664 0.93760 0.97738 0.87455 1.88115 1.19779 1.81772 1.37665 1.19709 0.83012 0.87184 0.96037 0.89667 1.22258 1.01528 0.95808 1.02865 1.26864 0.92868 0.94629 0.97070 1.74212 1.20212 1.07799 1.07491 1.74884 1.11517 1.06757 1.25282 1.26039 0.94535 0.91022 0.81051 1.16683 1.06416 0.94351 1.02616 1.20357 0.93649 0.96266 0.95647 1.20641 1.04694 0.97477 1.02135 1.17851 0.88993 0.90557 0.90281 1.19883 1.24769 1.07132 0.93593 0.89316 1.26173 0.93547 1.00202 0.95318 1.69791 1.31604 1.36784 1.00043 0.86133 0.79655 0.80937 0.79185 1.18726 1.19854 1.18168 1.20972 0.97976 0.98584 1.02147 1.20406 0.97348 0.93482 0.94176 1.84745 1.51384 1.30426 1.44931 0.89534 0.94302 0.93940 0.91732 0.92156 0.92071 0.91298 0.91036 0.90895 0.90475 0.88505 0.87945 0.89813 0.85673 0.87546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.77 10.67 -40.08 -0.43 -5.20 16 3 C 0.06 0.59 6.32 37.15 0.23 0.82 16 4 C 0.06 0.58 6.13 37.15 0.23 0.81 16 5 O -0.35 -5.05 9.94 -40.08 -0.40 -5.44 16 6 C 0.20 2.74 3.27 -27.88 -0.09 2.65 16 7 H 0.09 0.95 7.79 -51.93 -0.40 0.55 16 8 C -0.17 -1.80 9.51 37.16 0.35 -1.45 16 9 C 0.10 1.86 7.36 -12.80 -0.09 1.77 16 10 N -0.25 -5.50 12.23 32.60 0.40 -5.10 16 11 N -0.34 -8.01 11.91 32.01 0.38 -7.63 16 12 C 0.27 6.33 7.97 -13.99 -0.11 6.21 16 13 C -0.20 -4.63 5.89 -104.73 -0.62 -5.24 16 14 C -0.04 -0.88 9.65 -39.59 -0.38 -1.26 16 15 C -0.23 -5.27 9.73 -39.29 -0.38 -5.66 16 16 C 0.13 3.14 5.57 -106.80 -0.60 2.55 16 17 C -0.43 -10.17 9.02 -37.90 -0.34 -10.52 16 18 H 0.09 1.99 7.91 -52.49 -0.42 1.57 16 19 C 0.07 1.59 5.13 -17.33 -0.09 1.50 16 20 N -0.76 -17.84 10.96 55.55 0.61 -17.23 16 21 Si 0.92 16.69 29.60 -169.99 -5.03 11.66 16 22 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 23 H -0.27 -4.89 7.11 56.52 0.40 -4.48 16 24 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 25 C -0.18 -4.40 8.62 -39.29 -0.34 -4.74 16 26 C -0.03 -0.83 9.63 -39.59 -0.38 -1.21 16 27 O -0.23 -4.85 10.64 3.93 0.04 -4.81 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.07 0.44 7.87 -51.92 -0.41 0.03 16 35 H 0.07 0.54 7.87 -51.93 -0.41 0.13 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 38 H 0.10 1.93 7.91 -52.49 -0.42 1.52 16 39 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 40 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 41 H 0.13 3.13 6.16 -52.48 -0.32 2.81 16 42 H 0.11 2.47 7.84 -52.49 -0.41 2.06 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -30.25 366.86 -6.12 -36.37 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.72 Total: 4.23 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -1.50 Total: -12.36 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: 1.39 Total: -29.96 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.78 Total: -15.46 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.03 Total: 11.66 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.25 -6.12 -36.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117239689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.434 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds