Wall clock time and date at job start Tue Mar 31 2020 12:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00462 * 2 1 4 4 C 1.52994 * 109.47208 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47394 * 64.99959 * 4 3 2 6 6 C 1.42895 * 114.00162 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.47197 * 30.00300 * 6 5 4 8 8 C 1.52997 * 109.47636 * 270.00364 * 6 5 4 9 9 C 1.50700 * 109.47266 * 149.99637 * 6 5 4 10 10 N 1.30602 * 126.15810 * 45.02831 * 9 6 5 11 11 N 1.28666 * 109.52697 * 179.97438 * 10 9 6 12 12 C 1.31561 * 109.19158 * 359.97438 * 11 10 9 13 13 C 1.47282 * 126.39097 * 180.02562 * 12 11 10 14 14 C 1.40221 * 119.90779 * 179.74984 * 13 12 11 15 15 C 1.36130 * 120.09663 * 180.27681 * 14 13 12 16 16 C 1.41001 * 119.90328 * 0.02562 * 15 14 13 17 17 C 1.40893 * 120.09304 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00165 * 24.76780 * 17 16 15 19 19 C 1.40038 * 120.00105 * 204.77335 * 17 16 15 20 20 N 1.30778 * 120.00289 * 17.96756 * 19 17 16 21 21 Si 1.86806 * 120.00201 * 197.97280 * 19 17 16 22 22 H 1.48502 * 109.47262 * 89.99643 * 21 19 17 23 23 H 1.48500 * 109.46764 * 209.99876 * 21 19 17 24 24 H 1.48498 * 109.46505 * 329.99578 * 21 19 17 25 25 C 1.41008 * 119.81596 * 359.97438 * 16 15 14 26 26 C 1.36131 * 119.90193 * 0.02562 * 25 16 15 27 27 O 1.34347 * 126.16473 * 225.29659 * 9 6 5 28 28 H 1.08997 * 109.47361 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46775 * 300.00039 * 1 2 3 30 30 H 1.09000 * 109.47266 * 59.99625 * 1 2 3 31 31 H 1.09003 * 109.46952 * 59.99672 * 3 2 1 32 32 H 1.09003 * 109.46774 * 300.00038 * 3 2 1 33 33 H 1.08997 * 109.47230 * 304.99651 * 4 3 2 34 34 H 1.09009 * 109.46992 * 185.00005 * 4 3 2 35 35 H 1.08992 * 109.47498 * 59.99521 * 8 6 5 36 36 H 1.09002 * 109.47520 * 180.02562 * 8 6 5 37 37 H 1.09011 * 109.46553 * 299.99924 * 8 6 5 38 38 H 1.07996 * 119.95117 * 0.27564 * 14 13 12 39 39 H 1.08001 * 120.04493 * 180.02562 * 15 14 13 40 40 H 0.96993 * 120.00902 * 179.97438 * 20 19 17 41 41 H 1.08003 * 120.05249 * 179.97438 * 25 16 15 42 42 H 1.07998 * 119.95168 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9649 0.5795 -1.2220 6 6 5.3812 0.4199 -1.3250 7 1 5.8048 0.2833 -0.3300 8 6 5.9892 1.6663 -1.9714 9 6 5.6903 -0.7872 -2.1726 10 7 5.1230 -1.0979 -3.3072 11 7 5.6297 -2.1921 -3.7559 12 6 6.5465 -2.6208 -2.9155 13 6 7.3626 -3.8384 -3.0589 14 6 8.3096 -4.1650 -2.0778 15 6 9.0699 -5.2865 -2.2093 16 6 8.9044 -6.1199 -3.3346 17 6 9.6896 -7.2814 -3.4750 18 1 10.1087 -7.7587 -2.6017 19 6 9.9266 -7.8167 -4.7472 20 7 9.7360 -7.0817 -5.8119 21 14 10.5148 -9.5810 -4.9234 22 1 9.3420 -10.4852 -5.0337 23 1 11.3515 -9.7041 -6.1440 24 1 11.3186 -9.9559 -3.7323 25 6 7.9510 -5.7878 -4.3189 26 6 7.1948 -4.6644 -4.1795 27 8 6.5956 -1.7401 -1.8947 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8514 0.5681 0.8409 34 1 3.9786 2.1764 0.0889 35 1 5.7656 2.5393 -1.3584 36 1 7.0695 1.5444 -2.0504 37 1 5.5655 1.8029 -2.9664 38 1 8.4360 -3.5259 -1.2165 39 1 9.7988 -5.5375 -1.4529 40 1 9.9005 -7.4522 -6.6930 41 1 7.8213 -6.4232 -5.1825 42 1 6.4640 -4.4095 -4.9327 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117239689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:34 Heat of formation + Delta-G solvation = -61.902386 kcal Electronic energy + Delta-G solvation = -25239.623793 eV Core-core repulsion = 21378.760779 eV Total energy + Delta-G solvation = -3860.863014 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.95210 -39.79205 -39.55081 -38.43112 -37.05350 -35.98592 -34.09926 -32.61461 -31.54684 -30.80029 -30.26368 -27.66813 -27.18340 -25.66020 -24.60189 -23.58421 -23.11551 -22.40791 -22.11125 -19.42998 -18.68986 -18.29370 -18.07793 -17.56534 -17.49598 -17.00367 -16.72268 -16.33178 -15.90601 -15.83675 -15.56083 -15.17323 -14.57523 -14.10466 -14.06232 -13.93223 -13.73730 -13.44488 -13.36843 -13.29516 -13.09469 -12.94630 -12.81968 -12.80171 -12.64417 -12.42928 -12.26829 -12.03593 -11.82385 -11.72885 -11.39130 -11.33858 -10.89911 -10.74485 -10.62460 -9.68227 -9.28188 -8.86087 -6.52265 -0.23057 0.82128 1.09367 1.15357 1.37705 1.42245 1.55279 1.72397 2.14050 2.60927 2.65378 2.87762 2.97828 3.57625 3.60544 3.69532 3.90327 4.11265 4.24118 4.24409 4.32017 4.38744 4.40832 4.43697 4.52094 4.54639 4.56034 4.63024 4.68779 4.81155 4.84091 4.85326 4.91269 4.97297 5.08850 5.17889 5.20742 5.51884 5.72415 5.91368 5.95015 6.03167 6.09596 6.27154 6.45599 6.67047 6.77957 7.41279 8.07500 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025441 B = 0.002250 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.300499 B =12443.394184 C =12814.268974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.423 6.423 3 C 0.057 3.943 4 C 0.052 3.948 5 O -0.386 6.386 6 C 0.196 3.804 7 H 0.117 0.883 8 C -0.160 4.160 9 C 0.121 3.879 10 N -0.288 5.288 11 N -0.360 5.360 12 C 0.260 3.740 13 C -0.209 4.209 14 C -0.036 4.036 15 C -0.237 4.237 16 C 0.101 3.899 17 C -0.448 4.448 18 H 0.099 0.901 19 C 0.032 3.968 20 N -0.791 5.791 21 Si 0.993 3.007 22 H -0.261 1.261 23 H -0.266 1.266 24 H -0.250 1.250 25 C -0.194 4.194 26 C -0.042 4.042 27 O -0.231 6.231 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.300 0.700 41 H 0.114 0.886 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.584 13.811 11.664 19.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.343 6.343 3 C -0.019 4.019 4 C -0.024 4.024 5 O -0.306 6.306 6 C 0.137 3.863 7 H 0.135 0.865 8 C -0.217 4.217 9 C -0.091 4.091 10 N -0.134 5.134 11 N -0.208 5.208 12 C 0.058 3.942 13 C -0.213 4.213 14 C -0.056 4.056 15 C -0.256 4.256 16 C 0.097 3.903 17 C -0.474 4.474 18 H 0.117 0.883 19 C -0.188 4.188 20 N -0.414 5.414 21 Si 0.812 3.188 22 H -0.185 1.185 23 H -0.191 1.191 24 H -0.173 1.173 25 C -0.214 4.214 26 C -0.061 4.061 27 O -0.113 6.113 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.111 0.889 41 H 0.132 0.868 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.410 13.720 10.206 19.056 hybrid contribution 0.704 -0.581 0.485 1.034 sum -7.706 13.139 10.691 18.610 Atomic orbital electron populations 1.22876 0.79672 1.03335 1.01031 1.87949 1.21440 1.29307 1.95638 1.22797 0.91867 0.84812 1.02446 1.23050 0.94164 0.99504 0.85658 1.88080 1.19727 1.82592 1.40154 1.20229 0.83699 0.85630 0.96759 0.86531 1.22260 1.01301 0.95775 1.02410 1.28284 0.90111 0.94414 0.96332 1.74164 1.21819 1.08021 1.09419 1.74815 1.12010 1.07715 1.26223 1.25915 0.94917 0.91565 0.81842 1.16808 1.07060 0.94670 1.02807 1.20576 0.92747 0.96308 0.95944 1.20874 1.05222 0.97386 1.02140 1.18195 0.89496 0.91600 0.91013 1.20218 1.25054 1.07389 0.94774 0.88289 1.27085 0.93122 1.04169 0.94443 1.69831 1.31866 1.38793 1.00884 0.85023 0.79144 0.75143 0.79512 1.18544 1.19077 1.17299 1.20929 0.98983 0.99044 1.02424 1.20430 0.97351 0.93697 0.94648 1.84750 1.51866 1.30444 1.44231 0.89824 0.91941 0.93599 0.88336 0.92309 0.91794 0.87314 0.86840 0.90511 0.92416 0.85979 0.85951 0.88899 0.86793 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.42 -10.19 10.67 -144.34 -1.54 -11.73 16 3 C 0.06 0.92 6.32 71.98 0.45 1.37 16 4 C 0.05 0.84 6.13 71.98 0.44 1.28 16 5 O -0.39 -10.25 9.94 -144.34 -1.43 -11.68 16 6 C 0.20 4.90 3.27 29.85 0.10 5.00 16 7 H 0.12 2.17 7.79 -2.39 -0.02 2.15 16 8 C -0.16 -2.99 9.51 71.98 0.68 -2.31 16 9 C 0.12 4.56 7.36 88.29 0.65 5.21 16 10 N -0.29 -12.93 12.23 -165.19 -2.02 -14.95 16 11 N -0.36 -17.67 11.91 -166.30 -1.98 -19.65 16 12 C 0.26 12.21 7.97 87.11 0.69 12.90 16 13 C -0.21 -10.07 5.89 -19.94 -0.12 -10.19 16 14 C -0.04 -1.60 9.65 22.26 0.21 -1.38 16 15 C -0.24 -10.85 9.73 22.46 0.22 -10.63 16 16 C 0.10 5.08 5.57 -21.27 -0.12 4.97 16 17 C -0.45 -21.46 9.02 23.36 0.21 -21.25 16 18 H 0.10 4.39 7.91 -2.91 -0.02 4.37 16 19 C 0.03 1.44 5.13 85.29 0.44 1.88 16 20 N -0.79 -37.71 10.96 21.84 0.24 -37.47 16 21 Si 0.99 33.53 29.60 68.60 2.03 35.56 16 22 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 23 H -0.27 -8.62 7.11 99.48 0.71 -7.91 16 24 H -0.25 -8.06 7.11 99.48 0.71 -7.35 16 25 C -0.19 -10.03 8.62 22.46 0.19 -9.83 16 26 C -0.04 -2.08 9.63 22.26 0.21 -1.87 16 27 O -0.23 -9.50 10.64 -8.86 -0.09 -9.60 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 1.00 8.09 -2.39 -0.02 0.98 16 34 H 0.11 0.87 7.87 -2.38 -0.02 0.85 16 35 H 0.11 1.19 7.87 -2.39 -0.02 1.17 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.12 4.70 7.91 -2.91 -0.02 4.68 16 39 H 0.12 4.99 8.06 -2.91 -0.02 4.96 16 40 H 0.30 12.73 8.29 -92.71 -0.77 11.96 16 41 H 0.11 6.01 6.16 -2.91 -0.02 5.99 16 42 H 0.10 5.07 7.84 -2.91 -0.02 5.04 16 Total: -1.00 -68.40 366.86 1.75 -66.64 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 1.03 Total: 26.05 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 5.52 Total: -23.17 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -3.76 Total: -72.07 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -3.07 Total: -33.01 kcal Atomic # 14 Polarization: 33.53 SS G_CDS: 2.03 Total: 35.56 kcal Total: -68.40 1.75 -66.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117239689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.738 kcal (2) G-P(sol) polarization free energy of solvation -68.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds