Wall clock time and date at job start Tue Mar 31 2020 12:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99831 * 2 1 4 4 C 1.52999 * 109.47265 * 179.97438 * 3 2 1 5 5 O 1.42908 * 109.46686 * 65.00439 * 4 3 2 6 6 C 1.42897 * 113.99968 * 180.02562 * 5 4 3 7 7 H 1.09006 * 109.47035 * 329.99585 * 6 5 4 8 8 C 1.52991 * 109.47377 * 90.00199 * 6 5 4 9 9 C 1.50703 * 109.46761 * 210.00280 * 6 5 4 10 10 N 1.30599 * 126.15893 * 314.68067 * 9 6 5 11 11 N 1.28680 * 109.51960 * 179.82644 * 10 9 6 12 12 C 1.31557 * 109.19496 * 0.44967 * 11 10 9 13 13 C 1.47277 * 126.39059 * 179.75983 * 12 11 10 14 14 C 1.40221 * 119.90701 * 179.68522 * 13 12 11 15 15 C 1.36130 * 120.09481 * 179.72024 * 14 13 12 16 16 C 1.41000 * 119.90519 * 0.55744 * 15 14 13 17 17 C 1.40898 * 120.09629 * 179.69791 * 16 15 14 18 18 H 1.08001 * 119.99915 * 204.76629 * 17 16 15 19 19 C 1.40035 * 119.99761 * 24.75974 * 17 16 15 20 20 N 1.30782 * 119.99824 * 17.98152 * 19 17 16 21 21 Si 1.86799 * 119.99982 * 197.97399 * 19 17 16 22 22 H 1.48505 * 109.47262 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47292 * 120.00321 * 21 19 17 24 24 H 1.48503 * 109.47359 * 240.00369 * 21 19 17 25 25 C 1.41007 * 119.81311 * 359.71728 * 16 15 14 26 26 C 1.36124 * 119.90342 * 0.02562 * 25 16 15 27 27 O 1.34348 * 126.15954 * 135.00000 * 9 6 5 28 28 H 1.08991 * 109.47125 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46777 * 299.99228 * 1 2 3 30 30 H 1.09001 * 109.47019 * 59.99038 * 1 2 3 31 31 H 1.09008 * 109.46894 * 60.00697 * 3 2 1 32 32 H 1.09003 * 109.47737 * 300.00809 * 3 2 1 33 33 H 1.09001 * 109.47373 * 305.00954 * 4 3 2 34 34 H 1.08992 * 109.47448 * 185.00154 * 4 3 2 35 35 H 1.09007 * 109.47208 * 300.00057 * 8 6 5 36 36 H 1.08997 * 109.47594 * 59.99875 * 8 6 5 37 37 H 1.09007 * 109.47449 * 180.02562 * 8 6 5 38 38 H 1.08004 * 119.95260 * 0.02562 * 14 13 12 39 39 H 1.08006 * 120.04471 * 180.27570 * 15 14 13 40 40 H 0.97004 * 119.99500 * 180.02562 * 20 19 17 41 41 H 1.08001 * 120.05055 * 179.97438 * 25 16 15 42 42 H 1.08003 * 119.95637 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9658 0.5794 -1.2203 6 6 5.3821 0.4189 -1.3218 7 1 5.8786 1.2105 -0.7606 8 6 5.7836 -0.9416 -0.7486 9 6 5.7938 0.4953 -2.7695 10 7 5.2078 -0.1056 -3.7700 11 7 5.8207 0.1835 -4.8639 12 6 6.8338 0.9785 -4.5949 13 6 7.7897 1.5352 -5.5672 14 6 8.8209 2.3786 -5.1295 15 6 9.7100 2.8907 -6.0241 16 6 9.5859 2.5815 -7.3941 17 6 10.5001 3.1145 -8.3244 18 1 10.2126 3.2290 -9.3591 19 6 11.7814 3.4957 -7.9072 20 7 12.2596 3.0506 -6.7743 21 14 12.8074 4.6399 -8.9690 22 1 12.0439 4.9986 -10.1912 23 1 13.1249 5.8728 -8.2046 24 1 14.0690 3.9583 -9.3552 25 6 8.5440 1.7376 -7.8308 26 6 7.6624 1.2255 -6.9289 27 8 6.8332 1.1892 -3.2624 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 1.6887 1.8463 0.8901 32 1 1.6885 1.8465 -0.8899 33 1 3.8508 0.5685 0.8426 34 1 3.9784 2.1765 0.0902 35 1 5.4858 -0.9969 0.2986 36 1 5.2871 -1.7332 -1.3097 37 1 6.8640 -1.0639 -0.8256 38 1 8.9128 2.6183 -4.0804 39 1 10.5066 3.5367 -5.6854 40 1 13.1470 3.3150 -6.4852 41 1 8.4451 1.4985 -8.8793 42 1 6.8643 0.5787 -7.2623 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117239691.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:39 Heat of formation + Delta-G solvation = -40.257413 kcal Electronic energy + Delta-G solvation = -25174.857609 eV Core-core repulsion = 21314.933191 eV Total energy + Delta-G solvation = -3859.924418 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.29835 -38.87201 -37.81427 -37.57361 -35.37819 -34.27210 -32.89001 -31.05318 -29.92730 -29.79194 -28.70849 -26.53097 -25.95584 -24.32229 -23.04043 -22.65974 -21.61642 -20.64841 -20.52882 -17.66942 -17.34819 -17.05125 -16.91143 -16.55535 -16.00103 -15.65315 -15.56624 -15.06523 -14.97511 -14.55778 -14.15903 -13.48219 -13.33148 -12.93535 -12.85182 -12.62346 -12.31364 -12.26880 -12.09426 -11.84795 -11.71252 -11.61645 -11.57800 -11.38602 -11.19430 -11.16885 -11.07327 -10.85836 -10.34772 -10.00138 -9.97139 -9.90253 -9.69339 -9.63039 -9.09317 -7.86901 -7.48917 -7.18448 -4.72143 1.43404 2.41009 2.61008 2.84484 2.87946 2.92402 2.93632 3.39513 3.49885 3.63688 3.73020 4.32392 4.39515 4.60788 4.78604 4.86935 4.91002 5.04143 5.08099 5.15062 5.20518 5.29156 5.39439 5.39520 5.44681 5.52378 5.61746 5.89065 6.03749 6.08818 6.16620 6.18410 6.38624 6.65393 6.70630 6.84512 6.89044 6.97632 7.01931 7.30142 7.53041 7.70311 7.76043 7.90008 8.23907 8.46025 8.57758 9.07194 9.71520 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.031794 B = 0.002139 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.470050 B =13086.224942 C =13298.159874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.064 3.936 4 C 0.061 3.939 5 O -0.355 6.355 6 C 0.201 3.799 7 H 0.085 0.915 8 C -0.166 4.166 9 C 0.097 3.903 10 N -0.249 5.249 11 N -0.339 5.339 12 C 0.274 3.726 13 C -0.197 4.197 14 C -0.054 4.054 15 C -0.175 4.175 16 C 0.127 3.873 17 C -0.425 4.425 18 H 0.090 0.910 19 C 0.070 3.930 20 N -0.762 5.762 21 Si 0.917 3.083 22 H -0.255 1.255 23 H -0.267 1.267 24 H -0.270 1.270 25 C -0.232 4.232 26 C -0.019 4.019 27 O -0.231 6.231 28 H 0.086 0.914 29 H 0.038 0.962 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.289 0.711 41 H 0.105 0.895 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.101 0.133 13.304 16.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.274 6.274 6 C 0.141 3.859 7 H 0.103 0.897 8 C -0.224 4.224 9 C -0.115 4.115 10 N -0.097 5.097 11 N -0.187 5.187 12 C 0.074 3.926 13 C -0.202 4.202 14 C -0.074 4.074 15 C -0.194 4.194 16 C 0.123 3.877 17 C -0.452 4.452 18 H 0.108 0.892 19 C -0.152 4.152 20 N -0.384 5.384 21 Si 0.740 3.260 22 H -0.179 1.179 23 H -0.192 1.192 24 H -0.195 1.195 25 C -0.251 4.251 26 C -0.039 4.039 27 O -0.114 6.114 28 H 0.104 0.896 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.141 0.859 40 H 0.101 0.899 41 H 0.123 0.877 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.772 -0.849 12.666 16.649 hybrid contribution 1.314 1.514 0.544 2.077 sum -9.458 0.664 13.210 16.260 Atomic orbital electron populations 1.22743 0.81094 1.02884 0.99806 1.87976 1.19566 1.27130 1.95358 1.22543 0.92101 0.85668 1.00992 1.22665 0.93707 0.97563 0.87639 1.88115 1.19621 1.81545 1.38083 1.19713 0.82890 0.99041 0.84251 0.89715 1.22238 1.02340 0.96348 1.01429 1.26899 0.88751 0.97158 0.98691 1.74229 1.22367 1.18528 0.94570 1.74881 1.07634 1.17670 1.18540 1.26030 0.95098 0.93071 0.78391 1.16669 1.00457 1.13613 0.89438 1.20459 0.93460 0.95467 0.98055 1.20939 1.00589 1.04619 0.93261 1.17862 0.90268 0.86887 0.92684 1.19924 0.95983 1.32168 0.97165 0.89204 1.26180 0.98753 0.94803 0.95479 1.69809 1.16989 1.32148 1.19470 0.86099 0.79310 0.79862 0.80745 1.17872 1.19230 1.19484 1.20675 1.00992 1.05275 0.98178 1.20303 0.96672 0.96186 0.90745 1.84758 1.44691 1.58408 1.23509 0.89554 0.94311 0.93940 0.91698 0.92186 0.91908 0.91426 0.90940 0.90423 0.91025 0.88589 0.85850 0.89929 0.87707 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.37 10.67 -40.08 -0.43 -4.79 16 3 C 0.06 0.59 6.32 37.16 0.23 0.83 16 4 C 0.06 0.59 6.13 37.16 0.23 0.82 16 5 O -0.36 -5.07 9.94 -40.08 -0.40 -5.47 16 6 C 0.20 2.78 3.27 -27.89 -0.09 2.69 16 7 H 0.08 0.94 7.79 -51.93 -0.40 0.53 16 8 C -0.17 -1.93 9.51 37.15 0.35 -1.58 16 9 C 0.10 1.84 7.36 -12.80 -0.09 1.74 16 10 N -0.25 -5.43 12.23 32.60 0.40 -5.03 16 11 N -0.34 -7.90 11.91 32.00 0.38 -7.52 16 12 C 0.27 6.25 7.97 -14.00 -0.11 6.14 16 13 C -0.20 -4.60 5.89 -104.73 -0.62 -5.21 16 14 C -0.05 -1.25 9.65 -39.59 -0.38 -1.63 16 15 C -0.17 -4.22 8.62 -39.29 -0.34 -4.55 16 16 C 0.13 3.11 5.57 -106.80 -0.60 2.51 16 17 C -0.43 -10.06 9.02 -37.90 -0.34 -10.40 16 18 H 0.09 2.01 7.91 -52.49 -0.42 1.59 16 19 C 0.07 1.57 5.13 -17.33 -0.09 1.48 16 20 N -0.76 -17.56 10.96 55.55 0.61 -16.95 16 21 Si 0.92 16.45 29.60 -169.99 -5.03 11.41 16 22 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 23 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 24 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 25 C -0.23 -5.35 9.73 -39.29 -0.38 -5.73 16 26 C -0.02 -0.44 9.63 -39.60 -0.38 -0.83 16 27 O -0.23 -4.80 10.64 3.92 0.04 -4.76 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.52 7.87 -51.93 -0.41 0.11 16 34 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 35 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 2.02 7.91 -52.48 -0.42 1.61 16 39 H 0.12 3.00 6.16 -52.48 -0.32 2.67 16 40 H 0.29 5.95 8.30 -40.82 -0.34 5.61 16 41 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 42 H 0.11 2.32 7.84 -52.48 -0.41 1.91 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -29.54 366.86 -6.12 -35.66 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.72 Total: 4.31 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -1.50 Total: -12.38 kcal Atomic # 7 Polarization: -30.89 SS G_CDS: 1.39 Total: -29.51 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.78 Total: -15.03 kcal Atomic # 14 Polarization: 16.45 SS G_CDS: -5.03 Total: 11.41 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.54 -6.12 -35.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117239691.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.602 kcal (2) G-P(sol) polarization free energy of solvation -29.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds