Wall clock time and date at job start Tue Mar 31 2020 12:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99831 * 2 1 4 4 C 1.52999 * 109.47265 * 179.97438 * 3 2 1 5 5 O 1.42908 * 109.46686 * 65.00439 * 4 3 2 6 6 C 1.42897 * 113.99968 * 180.02562 * 5 4 3 7 7 H 1.09006 * 109.47035 * 329.99585 * 6 5 4 8 8 C 1.52991 * 109.47377 * 90.00199 * 6 5 4 9 9 C 1.50703 * 109.46761 * 210.00280 * 6 5 4 10 10 N 1.30599 * 126.15893 * 314.68067 * 9 6 5 11 11 N 1.28680 * 109.51960 * 179.82644 * 10 9 6 12 12 C 1.31557 * 109.19496 * 0.44967 * 11 10 9 13 13 C 1.47277 * 126.39059 * 179.75983 * 12 11 10 14 14 C 1.40221 * 119.90701 * 179.68522 * 13 12 11 15 15 C 1.36130 * 120.09481 * 179.72024 * 14 13 12 16 16 C 1.41000 * 119.90519 * 0.55744 * 15 14 13 17 17 C 1.40898 * 120.09629 * 179.69791 * 16 15 14 18 18 H 1.08001 * 119.99915 * 204.76629 * 17 16 15 19 19 C 1.40035 * 119.99761 * 24.75974 * 17 16 15 20 20 N 1.30782 * 119.99824 * 17.98152 * 19 17 16 21 21 Si 1.86799 * 119.99982 * 197.97399 * 19 17 16 22 22 H 1.48505 * 109.47262 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47292 * 120.00321 * 21 19 17 24 24 H 1.48503 * 109.47359 * 240.00369 * 21 19 17 25 25 C 1.41007 * 119.81311 * 359.71728 * 16 15 14 26 26 C 1.36124 * 119.90342 * 0.02562 * 25 16 15 27 27 O 1.34348 * 126.15954 * 135.00000 * 9 6 5 28 28 H 1.08991 * 109.47125 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46777 * 299.99228 * 1 2 3 30 30 H 1.09001 * 109.47019 * 59.99038 * 1 2 3 31 31 H 1.09008 * 109.46894 * 60.00697 * 3 2 1 32 32 H 1.09003 * 109.47737 * 300.00809 * 3 2 1 33 33 H 1.09001 * 109.47373 * 305.00954 * 4 3 2 34 34 H 1.08992 * 109.47448 * 185.00154 * 4 3 2 35 35 H 1.09007 * 109.47208 * 300.00057 * 8 6 5 36 36 H 1.08997 * 109.47594 * 59.99875 * 8 6 5 37 37 H 1.09007 * 109.47449 * 180.02562 * 8 6 5 38 38 H 1.08004 * 119.95260 * 0.02562 * 14 13 12 39 39 H 1.08006 * 120.04471 * 180.27570 * 15 14 13 40 40 H 0.97004 * 119.99500 * 180.02562 * 20 19 17 41 41 H 1.08001 * 120.05055 * 179.97438 * 25 16 15 42 42 H 1.08003 * 119.95637 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9658 0.5794 -1.2203 6 6 5.3821 0.4189 -1.3218 7 1 5.8786 1.2105 -0.7606 8 6 5.7836 -0.9416 -0.7486 9 6 5.7938 0.4953 -2.7695 10 7 5.2078 -0.1056 -3.7700 11 7 5.8207 0.1835 -4.8639 12 6 6.8338 0.9785 -4.5949 13 6 7.7897 1.5352 -5.5672 14 6 8.8209 2.3786 -5.1295 15 6 9.7100 2.8907 -6.0241 16 6 9.5859 2.5815 -7.3941 17 6 10.5001 3.1145 -8.3244 18 1 10.2126 3.2290 -9.3591 19 6 11.7814 3.4957 -7.9072 20 7 12.2596 3.0506 -6.7743 21 14 12.8074 4.6399 -8.9690 22 1 12.0439 4.9986 -10.1912 23 1 13.1249 5.8728 -8.2046 24 1 14.0690 3.9583 -9.3552 25 6 8.5440 1.7376 -7.8308 26 6 7.6624 1.2255 -6.9289 27 8 6.8332 1.1892 -3.2624 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 1.6887 1.8463 0.8901 32 1 1.6885 1.8465 -0.8899 33 1 3.8508 0.5685 0.8426 34 1 3.9784 2.1765 0.0902 35 1 5.4858 -0.9969 0.2986 36 1 5.2871 -1.7332 -1.3097 37 1 6.8640 -1.0639 -0.8256 38 1 8.9128 2.6183 -4.0804 39 1 10.5066 3.5367 -5.6854 40 1 13.1470 3.3150 -6.4852 41 1 8.4451 1.4985 -8.8793 42 1 6.8643 0.5787 -7.2623 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117239691.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:38 Heat of formation + Delta-G solvation = -61.367749 kcal Electronic energy + Delta-G solvation = -25175.773022 eV Core-core repulsion = 21314.933191 eV Total energy + Delta-G solvation = -3860.839831 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.96009 -39.79601 -39.55360 -38.40847 -37.05771 -35.99337 -34.10369 -32.59596 -31.61672 -30.79007 -30.23595 -27.66775 -27.15029 -25.67264 -24.65275 -23.56973 -23.09538 -22.33367 -22.20483 -19.43707 -18.68655 -18.28059 -18.02983 -17.69087 -17.44901 -17.12386 -16.59156 -16.25018 -15.89401 -15.82896 -15.61999 -15.18912 -14.58163 -14.17894 -14.08277 -13.87627 -13.69820 -13.44303 -13.42034 -13.31655 -13.01503 -12.91789 -12.83755 -12.80611 -12.66337 -12.46797 -12.29603 -12.06475 -11.85117 -11.64911 -11.43738 -11.34673 -10.91080 -10.71653 -10.62524 -9.68767 -9.27919 -8.87113 -6.52396 -0.23826 0.81211 1.09565 1.13748 1.36750 1.41697 1.56995 1.71198 2.14494 2.59977 2.64466 2.86269 2.97585 3.57103 3.58747 3.69593 3.89977 4.10345 4.19043 4.24706 4.32860 4.38649 4.42495 4.43021 4.50963 4.56413 4.58032 4.62771 4.64934 4.81596 4.83301 4.87301 4.89717 4.96459 5.09933 5.16338 5.21304 5.51490 5.72677 5.90727 5.94083 6.02097 6.10700 6.25670 6.44527 6.67046 6.77339 7.40058 8.06854 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.031794 B = 0.002139 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.470050 B =13086.224942 C =13298.159874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.059 3.941 4 C 0.052 3.948 5 O -0.385 6.385 6 C 0.197 3.803 7 H 0.120 0.880 8 C -0.160 4.160 9 C 0.121 3.879 10 N -0.286 5.286 11 N -0.357 5.357 12 C 0.260 3.740 13 C -0.209 4.209 14 C -0.054 4.054 15 C -0.190 4.190 16 C 0.101 3.899 17 C -0.448 4.448 18 H 0.096 0.904 19 C 0.034 3.966 20 N -0.790 5.790 21 Si 0.991 3.009 22 H -0.253 1.253 23 H -0.261 1.261 24 H -0.263 1.263 25 C -0.240 4.240 26 C -0.024 4.024 27 O -0.232 6.232 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.040 0.960 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.300 0.700 41 H 0.118 0.882 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.840 1.045 14.913 17.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C -0.017 4.017 4 C -0.024 4.024 5 O -0.305 6.305 6 C 0.138 3.862 7 H 0.138 0.862 8 C -0.218 4.218 9 C -0.091 4.091 10 N -0.133 5.133 11 N -0.204 5.204 12 C 0.058 3.942 13 C -0.213 4.213 14 C -0.074 4.074 15 C -0.210 4.210 16 C 0.097 3.903 17 C -0.475 4.475 18 H 0.114 0.886 19 C -0.186 4.186 20 N -0.412 5.412 21 Si 0.811 3.189 22 H -0.176 1.176 23 H -0.186 1.186 24 H -0.188 1.188 25 C -0.260 4.260 26 C -0.044 4.044 27 O -0.114 6.114 28 H 0.110 0.890 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.116 0.884 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.125 0.875 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.112 0.888 41 H 0.136 0.864 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.547 0.041 14.290 17.761 hybrid contribution 1.116 1.179 0.203 1.636 sum -9.431 1.221 14.493 17.335 Atomic orbital electron populations 1.22894 0.79735 1.03630 1.00743 1.87923 1.21269 1.28532 1.95584 1.22722 0.91922 0.85131 1.01973 1.23023 0.94032 0.98937 0.86375 1.88082 1.19455 1.82298 1.40635 1.20181 0.83541 1.01461 0.81030 0.86222 1.22233 1.02445 0.94193 1.02902 1.28199 0.86601 0.93984 1.00363 1.74190 1.23570 1.20527 0.94997 1.74813 1.07947 1.17938 1.19730 1.25917 0.95324 0.93797 0.79137 1.16800 1.00782 1.13884 0.89853 1.20584 0.93027 0.95061 0.98682 1.20938 1.01041 1.05409 0.93598 1.18199 0.91204 0.87663 0.93256 1.20227 0.96824 1.32965 0.97470 0.88601 1.27041 0.99321 0.95604 0.96649 1.69828 1.17939 1.32703 1.20762 0.84998 0.77496 0.77603 0.78837 1.17605 1.18557 1.18767 1.20850 1.00912 1.05251 0.98968 1.20426 0.96830 0.96269 0.90843 1.84767 1.45343 1.58536 1.22727 0.89041 0.92157 0.94170 0.88388 0.93424 0.90037 0.89044 0.87510 0.92599 0.90489 0.87073 0.86473 0.88829 0.86375 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.41 -8.91 10.67 -144.34 -1.54 -10.45 16 3 C 0.06 0.97 6.32 71.98 0.45 1.43 16 4 C 0.05 0.86 6.13 71.98 0.44 1.30 16 5 O -0.39 -10.33 9.94 -144.34 -1.43 -11.76 16 6 C 0.20 5.02 3.27 29.85 0.10 5.12 16 7 H 0.12 2.20 7.79 -2.38 -0.02 2.18 16 8 C -0.16 -3.36 9.51 71.98 0.68 -2.68 16 9 C 0.12 4.50 7.36 88.29 0.65 5.15 16 10 N -0.29 -12.60 12.23 -165.19 -2.02 -14.62 16 11 N -0.36 -16.91 11.91 -166.30 -1.98 -18.89 16 12 C 0.26 11.98 7.97 87.11 0.69 12.68 16 13 C -0.21 -9.89 5.89 -19.94 -0.12 -10.01 16 14 C -0.05 -2.50 9.65 22.26 0.21 -2.28 16 15 C -0.19 -9.38 8.62 22.46 0.19 -9.19 16 16 C 0.10 5.03 5.57 -21.27 -0.12 4.91 16 17 C -0.45 -21.37 9.02 23.36 0.21 -21.16 16 18 H 0.10 4.30 7.91 -2.91 -0.02 4.27 16 19 C 0.03 1.51 5.13 85.29 0.44 1.94 16 20 N -0.79 -36.39 10.96 21.84 0.24 -36.15 16 21 Si 0.99 32.84 29.60 68.60 2.03 34.87 16 22 H -0.25 -8.20 7.11 99.48 0.71 -7.50 16 23 H -0.26 -8.34 7.11 99.48 0.71 -7.63 16 24 H -0.26 -8.39 7.11 99.48 0.71 -7.69 16 25 C -0.24 -11.33 9.73 22.46 0.22 -11.11 16 26 C -0.02 -1.13 9.63 22.26 0.21 -0.91 16 27 O -0.23 -9.49 10.64 -8.90 -0.09 -9.58 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 1.04 7.87 -2.39 -0.02 1.03 16 34 H 0.09 1.07 8.08 -2.39 -0.02 1.05 16 35 H 0.11 1.53 7.87 -2.38 -0.02 1.51 16 36 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.11 4.69 7.91 -2.91 -0.02 4.67 16 39 H 0.12 5.82 6.16 -2.91 -0.02 5.80 16 40 H 0.30 12.19 8.30 -92.70 -0.77 11.42 16 41 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 42 H 0.11 5.06 7.84 -2.91 -0.02 5.04 16 Total: -1.00 -65.30 366.86 1.75 -63.55 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 1.03 Total: 26.21 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 5.52 Total: -23.19 kcal Atomic # 7 Polarization: -65.89 SS G_CDS: -3.76 Total: -69.65 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -3.07 Total: -31.80 kcal Atomic # 14 Polarization: 32.84 SS G_CDS: 2.03 Total: 34.87 kcal Total: -65.30 1.75 -63.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117239691.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.178 kcal (2) G-P(sol) polarization free energy of solvation -65.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds