Wall clock time and date at job start Tue Mar 31 2020 13:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.47180 * 2 1 4 4 C 1.35987 * 117.00198 * 180.02562 * 3 2 1 5 5 C 1.38561 * 120.07417 * 359.97438 * 4 3 2 6 6 C 1.38245 * 120.00240 * 179.97438 * 5 4 3 7 7 C 1.38256 * 120.14249 * 359.97438 * 6 5 4 8 8 C 1.38234 * 120.14940 * 0.02562 * 7 6 5 9 9 C 1.38566 * 119.99993 * 359.97438 * 8 7 6 10 10 O 1.35990 * 120.07476 * 180.02562 * 9 8 7 11 11 C 1.42903 * 116.99884 * 359.97438 * 10 9 8 12 12 C 1.50703 * 109.47150 * 179.97438 * 11 10 9 13 13 N 1.30277 * 126.28441 * 89.68731 * 12 11 10 14 14 N 1.28669 * 109.38428 * 179.82835 * 13 12 11 15 15 C 1.30279 * 109.37752 * 0.44506 * 14 13 12 16 16 C 1.50695 * 126.28111 * 179.72956 * 15 14 13 17 17 C 1.53005 * 109.46944 * 90.00475 * 16 15 14 18 18 C 1.50701 * 109.47170 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99744 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00243 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99956 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00356 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47200 * 89.99991 * 22 20 18 24 24 H 1.48497 * 109.47464 * 210.00534 * 22 20 18 25 25 H 1.48506 * 109.47075 * 330.00297 * 22 20 18 26 26 O 1.34366 * 126.28168 * 270.00488 * 12 11 10 27 27 H 1.08994 * 109.47480 * 299.99768 * 1 2 3 28 28 H 1.08995 * 109.47121 * 60.00380 * 1 2 3 29 29 H 1.09002 * 109.47131 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47318 * 240.00026 * 2 1 3 31 31 H 1.09000 * 109.47105 * 120.00095 * 2 1 3 32 32 H 1.08000 * 120.00421 * 359.96183 * 5 4 3 33 33 H 1.07998 * 119.92777 * 179.72163 * 6 5 4 34 34 H 1.08008 * 119.92432 * 180.02562 * 7 6 5 35 35 H 1.08006 * 120.00369 * 180.02562 * 8 7 6 36 36 H 1.08999 * 109.47251 * 299.99674 * 11 10 9 37 37 H 1.08999 * 109.47077 * 60.00392 * 11 10 9 38 38 H 1.09001 * 109.47396 * 209.99701 * 16 15 14 39 39 H 1.09001 * 109.47133 * 330.00075 * 16 15 14 40 40 H 1.09006 * 109.46803 * 299.99478 * 17 16 15 41 41 H 1.08993 * 109.47353 * 60.00109 * 17 16 15 42 42 H 0.96995 * 120.00279 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.2000 0.4278 -0.0005 6 6 5.5703 0.6106 -0.0016 7 6 6.1003 1.8876 -0.0033 8 6 5.2624 2.9870 -0.0033 9 6 3.8880 2.8107 -0.0022 10 8 3.0623 3.8913 -0.0027 11 6 3.6801 5.1798 -0.0039 12 6 2.6161 6.2471 -0.0050 13 7 2.0676 6.7900 1.0446 14 7 1.2025 7.6656 0.6697 15 6 1.1628 7.7042 -0.6319 16 6 0.2788 8.5902 -1.4712 17 6 1.0012 9.9085 -1.7562 18 6 0.1169 10.7949 -2.5950 19 1 -0.8622 10.4520 -2.8952 20 6 0.5579 12.0434 -2.9791 21 7 1.7500 12.4611 -2.6132 22 14 -0.5379 13.1417 -4.0194 23 1 -1.3788 13.9850 -3.1323 24 1 0.3053 14.0129 -4.8769 25 1 -1.4116 12.3004 -4.8763 26 8 2.0548 6.8091 -1.0887 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7886 -0.5708 0.0005 33 1 6.2282 -0.2458 0.0029 34 1 7.1714 2.0264 -0.0045 35 1 5.6789 3.9835 -0.0050 36 1 4.3008 5.2860 0.8858 37 1 4.3002 5.2847 -0.8942 38 1 0.0514 8.0898 -2.4125 39 1 -0.6479 8.7924 -0.9341 40 1 1.2286 10.4091 -0.8149 41 1 1.9278 9.7064 -2.2933 42 1 2.0604 13.3393 -2.8837 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118422899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:39 Heat of formation + Delta-G solvation = -17.576155 kcal Electronic energy + Delta-G solvation = -25098.428193 eV Core-core repulsion = 21239.487308 eV Total energy + Delta-G solvation = -3858.940885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.89534 -40.86125 -38.93927 -37.24982 -35.83337 -34.47824 -32.60826 -32.17921 -30.98932 -30.53279 -29.34253 -27.53636 -25.54566 -24.40081 -22.82007 -22.65757 -22.57180 -21.49717 -20.85265 -19.12083 -17.88982 -17.19654 -16.86551 -16.62681 -16.50618 -16.23773 -15.77148 -15.24692 -15.09868 -14.98823 -14.55749 -14.04417 -13.69104 -13.54646 -13.24636 -12.95394 -12.86711 -12.46273 -12.38748 -12.26904 -12.07830 -11.68379 -11.57086 -11.54427 -11.41870 -11.34165 -11.07754 -11.04109 -10.79911 -10.67321 -10.14924 -10.02028 -9.34666 -9.10673 -9.04755 -8.47212 -8.14272 -6.11492 -4.16449 0.93111 1.10909 1.26587 2.29106 2.67667 2.87146 3.21884 3.27921 3.34274 3.37037 3.39326 3.99762 4.36994 4.42366 4.50688 4.57681 4.58387 4.58837 4.73177 4.78561 4.87134 4.97495 5.01853 5.05719 5.22225 5.25080 5.37167 5.47416 5.54767 5.66593 5.73420 5.83015 5.85307 5.92342 6.14380 6.14728 6.19024 6.31608 6.57850 6.72235 7.26128 7.45150 7.53177 7.83768 8.18876 8.61120 8.88616 9.48594 10.99834 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.002232 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.432673 B =12540.120006 C =13263.564770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.304 6.304 4 C 0.106 3.894 5 C -0.175 4.175 6 C -0.117 4.117 7 C -0.116 4.116 8 C -0.172 4.172 9 C 0.104 3.896 10 O -0.298 6.298 11 C 0.168 3.832 12 C 0.126 3.874 13 N -0.255 5.255 14 N -0.303 5.303 15 C 0.213 3.787 16 C -0.028 4.028 17 C 0.027 3.973 18 C -0.526 4.526 19 H 0.062 0.938 20 C 0.060 3.940 21 N -0.892 5.892 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.272 1.272 26 O -0.217 6.217 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.138 0.862 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.028 0.972 41 H 0.022 0.978 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.120 -27.450 4.466 28.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.218 6.218 4 C 0.060 3.940 5 C -0.194 4.194 6 C -0.135 4.135 7 C -0.134 4.134 8 C -0.191 4.191 9 C 0.059 3.941 10 O -0.211 6.211 11 C 0.091 3.909 12 C -0.086 4.086 13 N -0.105 5.105 14 N -0.150 5.150 15 C 0.005 3.995 16 C -0.066 4.066 17 C -0.011 4.011 18 C -0.564 4.564 19 H 0.080 0.920 20 C -0.143 4.143 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.197 1.197 26 O -0.096 6.096 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.156 0.844 36 H 0.127 0.873 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.123 0.877 40 H 0.047 0.953 41 H 0.040 0.960 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.596 -26.900 5.670 28.271 hybrid contribution 0.113 0.274 -1.733 1.758 sum 6.709 -26.626 3.937 27.739 Atomic orbital electron populations 1.21772 0.92582 1.02748 1.03924 1.22805 0.96176 0.82004 1.01125 1.86230 1.17928 1.28925 1.88676 1.18230 0.83371 0.90986 1.01381 1.21076 0.94109 0.97342 1.06823 1.20877 0.94181 0.97429 1.01015 1.20873 0.99820 0.91793 1.00948 1.21154 0.90950 1.00805 1.06198 1.18203 0.88994 0.84784 1.02156 1.86211 1.33871 1.11927 1.89098 1.20598 0.88591 0.76949 1.04739 1.26743 1.00992 1.00133 0.80697 1.74288 1.05084 1.05370 1.25776 1.74485 1.15717 1.15116 1.09673 1.29075 0.89554 0.89141 0.91761 1.20819 0.95294 0.94127 0.96397 1.19179 0.95892 0.88036 0.97982 1.21061 1.02072 1.00375 1.32939 0.91996 1.25018 0.95176 0.97935 0.96141 1.69965 1.17903 1.19606 1.45503 0.86487 0.80298 0.80436 0.80168 1.20462 1.21154 1.19709 1.84804 1.43658 1.43499 1.37682 0.91350 0.91359 0.90373 0.92105 0.92104 0.84789 0.85520 0.85327 0.84400 0.87271 0.88627 0.89315 0.87717 0.95323 0.95959 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.05 0.43 5.46 37.16 0.20 0.63 16 3 O -0.30 -3.73 9.92 -34.20 -0.34 -4.07 16 4 C 0.11 1.22 6.70 -39.12 -0.26 0.96 16 5 C -0.17 -1.50 9.04 -39.46 -0.36 -1.86 16 6 C -0.12 -0.87 10.04 -39.57 -0.40 -1.27 16 7 C -0.12 -0.90 10.04 -39.58 -0.40 -1.29 16 8 C -0.17 -1.58 9.04 -39.46 -0.36 -1.94 16 9 C 0.10 1.25 6.70 -39.12 -0.26 0.99 16 10 O -0.30 -4.23 9.91 -34.21 -0.34 -4.57 16 11 C 0.17 2.07 5.36 36.01 0.19 2.26 16 12 C 0.13 2.18 8.11 -12.94 -0.10 2.07 16 13 N -0.26 -5.04 12.22 32.55 0.40 -4.64 16 14 N -0.30 -6.48 12.22 32.55 0.40 -6.08 16 15 C 0.21 4.36 7.73 -12.94 -0.10 4.26 16 16 C -0.03 -0.56 5.78 -27.88 -0.16 -0.72 16 17 C 0.03 0.68 4.96 -27.88 -0.14 0.54 16 18 C -0.53 -14.27 9.11 -34.44 -0.31 -14.58 16 19 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 22 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 O -0.22 -4.16 10.87 5.36 0.06 -4.10 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 31 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 32 H 0.13 0.83 6.30 -52.49 -0.33 0.50 16 33 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 35 H 0.14 0.97 6.30 -52.48 -0.33 0.64 16 36 H 0.11 1.06 7.66 -51.93 -0.40 0.66 16 37 H 0.10 0.93 7.66 -51.93 -0.40 0.53 16 38 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 39 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 365.51 15.07 5.51 5.51 Total: -1.00 -33.92 365.51 -6.37 -40.29 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -5.60 Total: -3.74 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -2.17 Total: -9.07 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 1.53 Total: -36.29 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.62 Total: -12.74 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.92 -6.37 -40.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118422899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.714 kcal (2) G-P(sol) polarization free energy of solvation -33.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds