Wall clock time and date at job start Tue Mar 31 2020 13:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.47180 * 2 1 4 4 C 1.35987 * 117.00198 * 180.02562 * 3 2 1 5 5 C 1.38561 * 120.07417 * 359.97438 * 4 3 2 6 6 C 1.38245 * 120.00240 * 179.97438 * 5 4 3 7 7 C 1.38256 * 120.14249 * 359.97438 * 6 5 4 8 8 C 1.38234 * 120.14940 * 0.02562 * 7 6 5 9 9 C 1.38566 * 119.99993 * 359.97438 * 8 7 6 10 10 O 1.35990 * 120.07476 * 180.02562 * 9 8 7 11 11 C 1.42903 * 116.99884 * 359.97438 * 10 9 8 12 12 C 1.50703 * 109.47150 * 179.97438 * 11 10 9 13 13 N 1.30277 * 126.28441 * 89.68731 * 12 11 10 14 14 N 1.28669 * 109.38428 * 179.82835 * 13 12 11 15 15 C 1.30279 * 109.37752 * 0.44506 * 14 13 12 16 16 C 1.50695 * 126.28111 * 179.72956 * 15 14 13 17 17 C 1.53005 * 109.46944 * 90.00475 * 16 15 14 18 18 C 1.50701 * 109.47170 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99744 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00243 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99956 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00356 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47200 * 89.99991 * 22 20 18 24 24 H 1.48497 * 109.47464 * 210.00534 * 22 20 18 25 25 H 1.48506 * 109.47075 * 330.00297 * 22 20 18 26 26 O 1.34366 * 126.28168 * 270.00488 * 12 11 10 27 27 H 1.08994 * 109.47480 * 299.99768 * 1 2 3 28 28 H 1.08995 * 109.47121 * 60.00380 * 1 2 3 29 29 H 1.09002 * 109.47131 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47318 * 240.00026 * 2 1 3 31 31 H 1.09000 * 109.47105 * 120.00095 * 2 1 3 32 32 H 1.08000 * 120.00421 * 359.96183 * 5 4 3 33 33 H 1.07998 * 119.92777 * 179.72163 * 6 5 4 34 34 H 1.08008 * 119.92432 * 180.02562 * 7 6 5 35 35 H 1.08006 * 120.00369 * 180.02562 * 8 7 6 36 36 H 1.08999 * 109.47251 * 299.99674 * 11 10 9 37 37 H 1.08999 * 109.47077 * 60.00392 * 11 10 9 38 38 H 1.09001 * 109.47396 * 209.99701 * 16 15 14 39 39 H 1.09001 * 109.47133 * 330.00075 * 16 15 14 40 40 H 1.09006 * 109.46803 * 299.99478 * 17 16 15 41 41 H 1.08993 * 109.47353 * 60.00109 * 17 16 15 42 42 H 0.96995 * 120.00279 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.2000 0.4278 -0.0005 6 6 5.5703 0.6106 -0.0016 7 6 6.1003 1.8876 -0.0033 8 6 5.2624 2.9870 -0.0033 9 6 3.8880 2.8107 -0.0022 10 8 3.0623 3.8913 -0.0027 11 6 3.6801 5.1798 -0.0039 12 6 2.6161 6.2471 -0.0050 13 7 2.0676 6.7900 1.0446 14 7 1.2025 7.6656 0.6697 15 6 1.1628 7.7042 -0.6319 16 6 0.2788 8.5902 -1.4712 17 6 1.0012 9.9085 -1.7562 18 6 0.1169 10.7949 -2.5950 19 1 -0.8622 10.4520 -2.8952 20 6 0.5579 12.0434 -2.9791 21 7 1.7500 12.4611 -2.6132 22 14 -0.5379 13.1417 -4.0194 23 1 -1.3788 13.9850 -3.1323 24 1 0.3053 14.0129 -4.8769 25 1 -1.4116 12.3004 -4.8763 26 8 2.0548 6.8091 -1.0887 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7886 -0.5708 0.0005 33 1 6.2282 -0.2458 0.0029 34 1 7.1714 2.0264 -0.0045 35 1 5.6789 3.9835 -0.0050 36 1 4.3008 5.2860 0.8858 37 1 4.3002 5.2847 -0.8942 38 1 0.0514 8.0898 -2.4125 39 1 -0.6479 8.7924 -0.9341 40 1 1.2286 10.4091 -0.8149 41 1 1.9278 9.7064 -2.2933 42 1 2.0604 13.3393 -2.8837 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118422899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:38 Heat of formation + Delta-G solvation = -41.969857 kcal Electronic energy + Delta-G solvation = -25099.485984 eV Core-core repulsion = 21239.487308 eV Total energy + Delta-G solvation = -3859.998675 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.41870 -41.60147 -39.76175 -37.95454 -37.37732 -36.33566 -34.31214 -32.95995 -32.31699 -31.26762 -30.25637 -28.87358 -27.29541 -25.11338 -24.56945 -23.83451 -23.33417 -22.63611 -22.30244 -19.89804 -18.98856 -18.58115 -18.33642 -18.00025 -17.52652 -17.27153 -16.68358 -16.51034 -16.17443 -15.78426 -15.71901 -15.62650 -15.04609 -14.37390 -14.33526 -14.25987 -13.78137 -13.64892 -13.46155 -13.40657 -13.15416 -13.10093 -12.88277 -12.83517 -12.63455 -12.42840 -12.30007 -12.15794 -11.99062 -11.93508 -11.87752 -11.67087 -11.39181 -10.67950 -10.60061 -9.75831 -8.88409 -8.23641 -6.36318 -0.15708 0.28437 0.43121 0.91359 1.17152 1.44310 1.45505 1.56577 2.13295 2.24875 2.41160 2.74280 2.77000 3.11474 3.24342 3.60095 3.77646 3.83230 3.99705 4.03148 4.07299 4.19213 4.20320 4.22604 4.30596 4.36644 4.41023 4.44205 4.48269 4.49674 4.65702 4.83620 4.84172 4.89529 5.14645 5.22299 5.33868 5.36519 5.46061 5.53283 5.72296 5.73150 5.97347 6.08475 6.55437 6.78530 7.07503 7.33954 8.88963 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.002232 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.432673 B =12540.120006 C =13263.564770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.339 6.339 4 C 0.079 3.921 5 C -0.175 4.175 6 C -0.112 4.112 7 C -0.117 4.117 8 C -0.173 4.173 9 C 0.068 3.932 10 O -0.328 6.328 11 C 0.167 3.833 12 C 0.145 3.855 13 N -0.285 5.285 14 N -0.324 5.324 15 C 0.201 3.799 16 C -0.013 4.013 17 C 0.034 3.966 18 C -0.541 4.541 19 H 0.077 0.923 20 C 0.000 4.000 21 N -0.934 5.934 22 Si 0.972 3.028 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.257 1.257 26 O -0.223 6.223 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.136 0.864 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.118 0.882 40 H -0.005 1.005 41 H -0.003 1.003 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.865 -29.433 3.681 30.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.254 6.254 4 C 0.034 3.966 5 C -0.193 4.193 6 C -0.130 4.130 7 C -0.135 4.135 8 C -0.192 4.192 9 C 0.024 3.976 10 O -0.242 6.242 11 C 0.091 3.909 12 C -0.067 4.067 13 N -0.133 5.133 14 N -0.171 5.171 15 C -0.009 4.009 16 C -0.052 4.052 17 C -0.004 4.004 18 C -0.579 4.579 19 H 0.096 0.904 20 C -0.198 4.198 21 N -0.574 5.574 22 Si 0.796 3.204 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.181 1.181 26 O -0.102 6.102 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.124 0.876 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.173 0.827 33 H 0.176 0.824 34 H 0.175 0.825 35 H 0.174 0.826 36 H 0.154 0.846 37 H 0.142 0.858 38 H 0.129 0.871 39 H 0.136 0.864 40 H 0.014 0.986 41 H 0.016 0.984 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.337 -28.914 4.905 30.231 hybrid contribution 0.013 0.717 -1.441 1.610 sum 7.350 -28.197 3.464 29.344 Atomic orbital electron populations 1.21816 0.92376 1.04153 1.02603 1.23059 0.96425 0.80760 1.02531 1.86181 1.18815 1.31313 1.89130 1.18634 0.83540 0.91792 1.02661 1.21391 0.94497 0.97511 1.05937 1.21328 0.94070 0.98545 0.99059 1.21291 1.01137 0.91442 0.99651 1.21451 0.89937 1.02420 1.05347 1.18595 0.90015 0.84265 1.04717 1.86124 1.35376 1.12638 1.90041 1.20990 0.86900 0.75598 1.07426 1.27811 0.99831 0.99476 0.79550 1.74231 1.06049 1.06260 1.26768 1.74410 1.16593 1.15819 1.10256 1.28941 0.90356 0.89985 0.91592 1.20578 0.94979 0.91901 0.97722 1.18959 0.95342 0.90284 0.95777 1.21540 1.02816 1.00815 1.32713 0.90441 1.26025 0.96570 0.99730 0.97507 1.70111 1.19994 1.20213 1.47082 0.85335 0.78325 0.78315 0.78405 1.19874 1.21044 1.18089 1.84811 1.43584 1.43443 1.38373 0.92652 0.92645 0.87578 0.90598 0.90587 0.82657 0.82446 0.82502 0.82581 0.84631 0.85773 0.87145 0.86434 0.98617 0.98416 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 10.28 71.98 0.74 -1.37 16 2 C 0.05 0.70 5.46 71.98 0.39 1.10 16 3 O -0.34 -8.51 9.92 -79.54 -0.79 -9.30 16 4 C 0.08 1.79 6.70 22.57 0.15 1.94 16 5 C -0.17 -2.66 9.04 22.35 0.20 -2.45 16 6 C -0.11 -1.31 10.04 22.28 0.22 -1.09 16 7 C -0.12 -1.44 10.04 22.27 0.22 -1.22 16 8 C -0.17 -2.84 9.04 22.35 0.20 -2.63 16 9 C 0.07 1.61 6.70 22.57 0.15 1.76 16 10 O -0.33 -9.33 9.91 -79.57 -0.79 -10.12 16 11 C 0.17 3.97 5.36 71.24 0.38 4.35 16 12 C 0.15 5.05 8.11 88.34 0.72 5.77 16 13 N -0.28 -11.46 12.22 -165.49 -2.02 -13.49 16 14 N -0.32 -14.23 12.22 -165.50 -2.02 -16.25 16 15 C 0.20 8.38 7.73 88.34 0.68 9.06 16 16 C -0.01 -0.55 5.78 29.85 0.17 -0.37 16 17 C 0.03 1.79 4.96 29.85 0.15 1.94 16 18 C -0.54 -29.43 9.11 25.60 0.23 -29.20 16 19 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 20 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 21 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 22 Si 0.97 43.02 29.54 68.60 2.03 45.04 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 26 O -0.22 -8.62 10.87 -3.72 -0.04 -8.66 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.87 7.66 -2.38 -0.02 0.85 16 31 H 0.08 0.87 7.66 -2.39 -0.02 0.85 16 32 H 0.16 1.53 6.30 -2.91 -0.02 1.51 16 33 H 0.16 0.85 8.06 -2.91 -0.02 0.82 16 34 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 35 H 0.16 1.80 6.30 -2.91 -0.02 1.78 16 36 H 0.14 2.44 7.66 -2.39 -0.02 2.43 16 37 H 0.12 2.19 7.66 -2.39 -0.02 2.17 16 38 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 39 H 0.12 4.46 8.14 -2.39 -0.02 4.44 16 40 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 41 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 42 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -76.28 365.51 2.77 -73.51 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 1.04 Total: 7.21 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 5.08 Total: -11.95 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -3.76 Total: -85.73 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -1.62 Total: -28.08 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -76.28 2.77 -73.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118422899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.540 kcal (2) G-P(sol) polarization free energy of solvation -76.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds