Wall clock time and date at job start Tue Mar 31 2020 12:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.83074 * 2 1 4 4 C 1.54996 * 110.90652 * 123.63874 * 2 1 3 5 5 O 1.44381 * 103.48603 * 155.22199 * 4 2 1 6 6 C 1.43742 * 106.97995 * 319.93870 * 5 4 2 7 7 C 1.54103 * 107.28882 * 26.51516 * 6 5 4 8 8 H 1.09000 * 110.48697 * 239.15540 * 7 6 5 9 9 N 1.46509 * 110.48429 * 116.64616 * 7 6 5 10 10 C 1.34768 * 120.00011 * 86.45675 * 9 7 6 11 11 O 1.21356 * 120.00423 * 359.97438 * 10 9 7 12 12 C 1.49356 * 119.99782 * 179.97438 * 10 9 7 13 13 O 1.21374 * 120.00418 * 359.97438 * 12 10 9 14 14 N 1.34782 * 119.99902 * 179.97438 * 12 10 9 15 15 C 1.39743 * 119.99927 * 183.12204 * 14 12 10 16 16 C 1.39337 * 119.95351 * 322.58375 * 15 14 12 17 17 C 1.38467 * 120.42805 * 180.02562 * 16 15 14 18 18 C 1.37702 * 120.32494 * 359.71074 * 17 16 15 19 19 C 1.40748 * 119.89326 * 0.56524 * 18 17 16 20 20 C 1.41412 * 120.20888 * 179.71691 * 19 18 17 21 21 H 1.07997 * 120.00312 * 157.69877 * 20 19 18 22 22 C 1.39935 * 119.99541 * 337.96340 * 20 19 18 23 23 N 1.30828 * 120.00625 * 328.46451 * 22 20 19 24 24 Si 1.86811 * 119.99593 * 148.45647 * 22 20 19 25 25 H 1.48500 * 109.46765 * 94.98926 * 24 22 20 26 26 H 1.48499 * 109.46979 * 214.98882 * 24 22 20 27 27 H 1.48497 * 109.47258 * 334.98868 * 24 22 20 28 28 C 1.38306 * 119.95288 * 142.60674 * 15 14 12 29 29 H 1.08997 * 109.47141 * 183.65386 * 1 2 3 30 30 H 1.09001 * 109.47664 * 303.65362 * 1 2 3 31 31 H 1.09006 * 109.47352 * 63.65284 * 1 2 3 32 32 H 1.09001 * 110.61575 * 36.72457 * 4 2 1 33 33 H 1.08992 * 110.62426 * 273.72631 * 4 2 1 34 34 H 1.08995 * 109.88017 * 267.09298 * 6 5 4 35 35 H 1.09001 * 110.00595 * 146.00425 * 6 5 4 36 36 H 0.97003 * 119.99714 * 266.44906 * 9 7 6 37 37 H 0.96993 * 120.00057 * 3.11589 * 14 12 10 38 38 H 1.08002 * 119.78932 * 0.04327 * 16 15 14 39 39 H 1.07996 * 119.84369 * 179.97438 * 17 16 15 40 40 H 1.07999 * 120.05695 * 180.28024 * 18 17 16 41 41 H 0.96998 * 120.00363 * 179.97438 * 23 22 20 42 42 H 1.08002 * 120.16046 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0831 -0.8021 1.2055 5 8 3.3940 -1.2142 0.7627 6 6 3.2718 -1.5883 -0.6198 7 6 2.0824 -0.8014 -1.2038 8 1 1.3257 -1.4844 -1.5896 9 7 2.5374 0.1071 -2.2593 10 6 2.6491 -0.3354 -3.5273 11 8 2.3734 -1.4866 -3.7949 12 6 3.1124 0.5909 -4.6034 13 8 3.3878 1.7424 -4.3360 14 7 3.2247 0.1482 -5.8715 15 6 3.7200 0.9957 -6.8661 16 6 3.3893 2.3492 -6.8550 17 6 3.8741 3.1977 -7.8360 18 6 4.6940 2.7136 -8.8308 19 6 5.0320 1.3476 -8.8585 20 6 5.8687 0.8422 -9.8804 21 1 6.4157 -0.0761 -9.7257 22 6 5.9920 1.5348 -11.0900 23 7 4.9831 2.2267 -11.5536 24 14 7.5976 1.4717 -12.0429 25 1 7.5213 0.4028 -13.0710 26 1 7.8317 2.7799 -12.7054 27 1 8.7159 1.1822 -11.1098 28 6 4.5374 0.4897 -7.8604 29 1 -0.3633 -1.0255 0.0655 30 1 -0.3634 0.5695 0.8554 31 1 -0.3634 0.4561 -0.9209 32 1 1.4561 -1.6702 1.4089 33 1 2.1581 -0.1664 2.0876 34 1 3.0825 -2.6588 -0.6988 35 1 4.1849 -1.3328 -1.1575 36 1 2.7581 1.0272 -2.0454 37 1 2.9618 -0.7585 -6.0937 38 1 2.7509 2.7392 -6.0761 39 1 3.6115 4.2450 -7.8185 40 1 5.0734 3.3801 -9.5912 41 1 5.0687 2.7071 -12.3919 42 1 4.7945 -0.5593 -7.8700 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121068071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:54 Heat of formation + Delta-G solvation = -94.469204 kcal Electronic energy + Delta-G solvation = -25631.494434 eV Core-core repulsion = 21769.219217 eV Total energy + Delta-G solvation = -3862.275218 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.94708 -39.88304 -38.53201 -37.18646 -35.34493 -34.48955 -33.27911 -33.00952 -29.94641 -29.39818 -28.51643 -26.70839 -25.36887 -24.87175 -22.81005 -21.32554 -21.11878 -20.88342 -19.80467 -18.40924 -17.75003 -17.24434 -16.41490 -16.32701 -15.72220 -15.60326 -15.51223 -15.00799 -14.86803 -14.61790 -14.02633 -13.94507 -13.68141 -13.49375 -13.10240 -12.96033 -12.75168 -12.36132 -12.32499 -11.88241 -11.77921 -11.64765 -11.48546 -11.36277 -11.29054 -11.13163 -10.75300 -10.58614 -10.19788 -10.16343 -9.85123 -9.49596 -9.42973 -9.22146 -8.92438 -7.58818 -7.09385 -6.94484 -4.38640 1.41663 2.33199 2.74598 2.81289 3.04611 3.07503 3.20605 3.41769 3.51776 3.75104 3.88659 3.94011 4.31925 4.44619 4.48452 4.58048 4.66058 4.84359 4.92624 5.13511 5.25578 5.30931 5.34149 5.51009 5.55405 5.59356 5.70735 6.03540 6.19999 6.40936 6.43653 6.57279 6.78040 6.85356 6.93812 7.01842 7.10926 7.42976 7.50058 7.68689 7.87791 7.94334 7.99564 8.17838 8.33433 8.55268 8.80330 8.88491 10.02655 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.031792 B = 0.002314 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.505893 B =12096.730549 C =12476.250611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 H 0.096 0.904 4 C 0.051 3.949 5 O -0.374 6.374 6 C 0.035 3.965 7 C 0.114 3.886 8 H 0.109 0.891 9 N -0.696 5.696 10 C 0.513 3.487 11 O -0.519 6.519 12 C 0.497 3.503 13 O -0.505 6.505 14 N -0.630 5.630 15 C 0.148 3.852 16 C -0.231 4.231 17 C -0.089 4.089 18 C -0.176 4.176 19 C 0.125 3.875 20 C -0.470 4.470 21 H 0.081 0.919 22 C 0.088 3.912 23 N -0.771 5.771 24 Si 0.897 3.103 25 H -0.270 1.270 26 H -0.274 1.274 27 H -0.258 1.258 28 C -0.243 4.243 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.415 0.585 37 H 0.413 0.587 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.283 0.717 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.193 -4.064 18.551 20.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 H 0.114 0.886 4 C -0.025 4.025 5 O -0.293 6.293 6 C -0.043 4.043 7 C 0.009 3.991 8 H 0.127 0.873 9 N -0.350 5.350 10 C 0.294 3.706 11 O -0.394 6.394 12 C 0.278 3.722 13 O -0.380 6.380 14 N -0.275 5.275 15 C 0.057 3.943 16 C -0.252 4.252 17 C -0.108 4.108 18 C -0.196 4.196 19 C 0.122 3.878 20 C -0.498 4.498 21 H 0.099 0.901 22 C -0.133 4.133 23 N -0.394 5.394 24 Si 0.720 3.280 25 H -0.195 1.195 26 H -0.199 1.199 27 H -0.181 1.181 28 C -0.264 4.264 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.253 0.747 37 H 0.249 0.751 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.125 0.875 41 H 0.094 0.906 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.105 -3.964 18.490 20.201 hybrid contribution 0.442 -0.013 -0.731 0.854 sum -6.663 -3.976 17.759 19.380 Atomic orbital electron populations 1.21736 0.92859 1.02622 1.02850 1.23032 0.97523 1.00762 0.93975 0.88585 1.23639 0.84368 0.97701 0.96834 1.88922 1.28879 1.86417 1.25044 1.23670 0.99203 0.98965 0.82433 1.22560 0.96794 0.92231 0.87518 0.87346 1.45790 1.66867 1.15810 1.06564 1.20396 0.78321 0.87966 0.83928 1.90754 1.47950 1.18286 1.82455 1.19897 0.80514 0.87920 0.83872 1.90781 1.47658 1.17596 1.81953 1.43162 1.60967 1.16987 1.06396 1.17447 0.97666 0.90116 0.89050 1.20285 1.09769 0.92351 1.02769 1.20524 0.98077 0.97353 0.94858 1.21164 1.03410 0.95579 0.99418 1.17300 0.88921 0.90895 0.90650 1.19464 1.23991 1.08734 0.97632 0.90057 1.25909 0.96889 0.93065 0.97452 1.69916 1.29500 1.22260 1.17763 0.86496 0.83218 0.78650 0.79619 1.19486 1.19884 1.18139 1.20680 1.06019 0.98638 1.01091 0.91971 0.91663 0.91729 0.91570 0.88410 0.91075 0.89063 0.74733 0.75131 0.87915 0.88894 0.87455 0.90575 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.19 37.16 0.34 -0.44 16 2 C -0.13 -0.90 3.44 -88.62 -0.30 -1.20 16 3 H 0.10 0.63 7.75 -51.93 -0.40 0.23 16 4 C 0.05 0.35 7.18 38.21 0.27 0.62 16 5 O -0.37 -3.80 11.52 -35.23 -0.41 -4.20 16 6 C 0.04 0.34 7.50 37.73 0.28 0.63 16 7 C 0.11 1.04 2.93 -66.40 -0.19 0.84 16 8 H 0.11 1.02 7.39 -51.93 -0.38 0.64 16 9 N -0.70 -7.68 5.04 -52.78 -0.27 -7.94 16 10 C 0.51 7.32 7.88 -11.63 -0.09 7.23 16 11 O -0.52 -8.11 16.19 5.49 0.09 -8.02 16 12 C 0.50 8.63 7.70 -11.63 -0.09 8.54 16 13 O -0.50 -9.80 14.09 5.48 0.08 -9.72 16 14 N -0.63 -11.71 5.31 -10.34 -0.05 -11.77 16 15 C 0.15 3.34 6.23 -83.82 -0.52 2.82 16 16 C -0.23 -5.37 8.68 -39.09 -0.34 -5.70 16 17 C -0.09 -2.11 10.02 -39.69 -0.40 -2.51 16 18 C -0.18 -4.52 8.79 -38.83 -0.34 -4.86 16 19 C 0.13 3.29 5.57 -106.85 -0.60 2.69 16 20 C -0.47 -12.20 8.96 -37.74 -0.34 -12.54 16 21 H 0.08 2.04 8.01 -52.49 -0.42 1.62 16 22 C 0.09 2.16 4.80 -17.34 -0.08 2.08 16 23 N -0.77 -19.40 11.72 55.55 0.65 -18.75 16 24 Si 0.90 18.08 29.66 -169.99 -5.04 13.04 16 25 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 26 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 27 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 28 C -0.24 -5.85 9.71 -38.67 -0.38 -6.23 16 29 H 0.06 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.37 8.01 -51.93 -0.42 -0.05 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.99 7.93 -51.93 -0.41 0.58 16 36 H 0.42 4.25 7.82 -40.82 -0.32 3.93 16 37 H 0.41 6.79 8.30 -40.82 -0.34 6.45 16 38 H 0.10 2.31 6.43 -52.49 -0.34 1.98 16 39 H 0.09 1.96 8.06 -52.49 -0.42 1.54 16 40 H 0.11 2.79 6.50 -52.49 -0.34 2.45 16 41 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 42 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 356.61 15.07 5.37 5.37 Total: -1.00 -29.70 356.61 -7.81 -37.51 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -5.46 Total: 12.52 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -2.77 Total: -8.04 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.33 Total: -38.46 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.24 Total: -21.94 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.04 Total: 13.04 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.70 -7.81 -37.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121068071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.956 kcal (2) G-P(sol) polarization free energy of solvation -29.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds