Wall clock time and date at job start Tue Mar 31 2020 12:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.83074 * 2 1 4 4 C 1.54996 * 110.90652 * 123.63874 * 2 1 3 5 5 O 1.44381 * 103.48603 * 155.22199 * 4 2 1 6 6 C 1.43742 * 106.97995 * 319.93870 * 5 4 2 7 7 C 1.54103 * 107.28882 * 26.51516 * 6 5 4 8 8 H 1.09000 * 110.48697 * 239.15540 * 7 6 5 9 9 N 1.46509 * 110.48429 * 116.64616 * 7 6 5 10 10 C 1.34768 * 120.00011 * 86.45675 * 9 7 6 11 11 O 1.21356 * 120.00423 * 359.97438 * 10 9 7 12 12 C 1.49356 * 119.99782 * 179.97438 * 10 9 7 13 13 O 1.21374 * 120.00418 * 359.97438 * 12 10 9 14 14 N 1.34782 * 119.99902 * 179.97438 * 12 10 9 15 15 C 1.39743 * 119.99927 * 183.12204 * 14 12 10 16 16 C 1.39337 * 119.95351 * 322.58375 * 15 14 12 17 17 C 1.38467 * 120.42805 * 180.02562 * 16 15 14 18 18 C 1.37702 * 120.32494 * 359.71074 * 17 16 15 19 19 C 1.40748 * 119.89326 * 0.56524 * 18 17 16 20 20 C 1.41412 * 120.20888 * 179.71691 * 19 18 17 21 21 H 1.07997 * 120.00312 * 157.69877 * 20 19 18 22 22 C 1.39935 * 119.99541 * 337.96340 * 20 19 18 23 23 N 1.30828 * 120.00625 * 328.46451 * 22 20 19 24 24 Si 1.86811 * 119.99593 * 148.45647 * 22 20 19 25 25 H 1.48500 * 109.46765 * 94.98926 * 24 22 20 26 26 H 1.48499 * 109.46979 * 214.98882 * 24 22 20 27 27 H 1.48497 * 109.47258 * 334.98868 * 24 22 20 28 28 C 1.38306 * 119.95288 * 142.60674 * 15 14 12 29 29 H 1.08997 * 109.47141 * 183.65386 * 1 2 3 30 30 H 1.09001 * 109.47664 * 303.65362 * 1 2 3 31 31 H 1.09006 * 109.47352 * 63.65284 * 1 2 3 32 32 H 1.09001 * 110.61575 * 36.72457 * 4 2 1 33 33 H 1.08992 * 110.62426 * 273.72631 * 4 2 1 34 34 H 1.08995 * 109.88017 * 267.09298 * 6 5 4 35 35 H 1.09001 * 110.00595 * 146.00425 * 6 5 4 36 36 H 0.97003 * 119.99714 * 266.44906 * 9 7 6 37 37 H 0.96993 * 120.00057 * 3.11589 * 14 12 10 38 38 H 1.08002 * 119.78932 * 0.04327 * 16 15 14 39 39 H 1.07996 * 119.84369 * 179.97438 * 17 16 15 40 40 H 1.07999 * 120.05695 * 180.28024 * 18 17 16 41 41 H 0.96998 * 120.00363 * 179.97438 * 23 22 20 42 42 H 1.08002 * 120.16046 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0831 -0.8021 1.2055 5 8 3.3940 -1.2142 0.7627 6 6 3.2718 -1.5883 -0.6198 7 6 2.0824 -0.8014 -1.2038 8 1 1.3257 -1.4844 -1.5896 9 7 2.5374 0.1071 -2.2593 10 6 2.6491 -0.3354 -3.5273 11 8 2.3734 -1.4866 -3.7949 12 6 3.1124 0.5909 -4.6034 13 8 3.3878 1.7424 -4.3360 14 7 3.2247 0.1482 -5.8715 15 6 3.7200 0.9957 -6.8661 16 6 3.3893 2.3492 -6.8550 17 6 3.8741 3.1977 -7.8360 18 6 4.6940 2.7136 -8.8308 19 6 5.0320 1.3476 -8.8585 20 6 5.8687 0.8422 -9.8804 21 1 6.4157 -0.0761 -9.7257 22 6 5.9920 1.5348 -11.0900 23 7 4.9831 2.2267 -11.5536 24 14 7.5976 1.4717 -12.0429 25 1 7.5213 0.4028 -13.0710 26 1 7.8317 2.7799 -12.7054 27 1 8.7159 1.1822 -11.1098 28 6 4.5374 0.4897 -7.8604 29 1 -0.3633 -1.0255 0.0655 30 1 -0.3634 0.5695 0.8554 31 1 -0.3634 0.4561 -0.9209 32 1 1.4561 -1.6702 1.4089 33 1 2.1581 -0.1664 2.0876 34 1 3.0825 -2.6588 -0.6988 35 1 4.1849 -1.3328 -1.1575 36 1 2.7581 1.0272 -2.0454 37 1 2.9618 -0.7585 -6.0937 38 1 2.7509 2.7392 -6.0761 39 1 3.6115 4.2450 -7.8185 40 1 5.0734 3.3801 -9.5912 41 1 5.0687 2.7071 -12.3919 42 1 4.7945 -0.5593 -7.8700 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121068071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:52 Heat of formation + Delta-G solvation = -114.498007 kcal Electronic energy + Delta-G solvation = -25632.362948 eV Core-core repulsion = 21769.219217 eV Total energy + Delta-G solvation = -3863.143732 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.13269 -40.92862 -39.78067 -38.87239 -36.59093 -35.85792 -34.93269 -33.80806 -31.84133 -30.54943 -29.93268 -27.28829 -27.18212 -26.15905 -23.79751 -22.91772 -22.46066 -21.96455 -21.16738 -19.78094 -19.33052 -18.24775 -17.56992 -17.34536 -17.21457 -16.83601 -16.64293 -16.48044 -16.40721 -15.80715 -15.42108 -15.10373 -14.78931 -14.66598 -14.24411 -14.13926 -14.10599 -13.56842 -13.42000 -13.36961 -12.98306 -12.91660 -12.83967 -12.52650 -12.48324 -12.25349 -11.98129 -11.88694 -11.85172 -11.64691 -11.20674 -10.91356 -10.83251 -10.65611 -10.32445 -9.50210 -8.91300 -8.78631 -6.34071 0.08427 0.93543 0.97160 1.21953 1.39108 1.48346 1.58162 2.04383 2.19740 2.51473 2.63808 2.89677 3.23543 3.34123 3.66865 3.69987 3.83538 3.97400 4.21507 4.38667 4.40732 4.54461 4.63073 4.67229 4.69670 4.81262 4.86460 4.92491 4.96725 5.00182 5.04200 5.10442 5.18798 5.25457 5.31044 5.61332 5.68753 5.76952 5.89717 6.00251 6.05897 6.19537 6.40226 6.59635 6.63726 6.83256 6.88812 6.99757 8.21568 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.031792 B = 0.002314 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.505893 B =12096.730549 C =12476.250611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 H 0.100 0.900 4 C 0.048 3.952 5 O -0.395 6.395 6 C 0.036 3.964 7 C 0.111 3.889 8 H 0.110 0.890 9 N -0.678 5.678 10 C 0.523 3.477 11 O -0.532 6.532 12 C 0.499 3.501 13 O -0.524 6.524 14 N -0.631 5.631 15 C 0.158 3.842 16 C -0.240 4.240 17 C -0.089 4.089 18 C -0.203 4.203 19 C 0.099 3.901 20 C -0.504 4.504 21 H 0.080 0.920 22 C 0.051 3.949 23 N -0.801 5.801 24 Si 0.972 3.028 25 H -0.259 1.259 26 H -0.264 1.264 27 H -0.260 1.260 28 C -0.259 4.259 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.421 0.579 37 H 0.423 0.577 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.294 0.706 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.585 -4.281 19.929 21.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 H 0.118 0.882 4 C -0.028 4.028 5 O -0.314 6.314 6 C -0.042 4.042 7 C 0.007 3.993 8 H 0.128 0.872 9 N -0.332 5.332 10 C 0.303 3.697 11 O -0.409 6.409 12 C 0.281 3.719 13 O -0.400 6.400 14 N -0.277 5.277 15 C 0.066 3.934 16 C -0.261 4.261 17 C -0.107 4.107 18 C -0.222 4.222 19 C 0.096 3.904 20 C -0.531 4.531 21 H 0.098 0.902 22 C -0.169 4.169 23 N -0.424 5.424 24 Si 0.792 3.208 25 H -0.184 1.184 26 H -0.188 1.188 27 H -0.184 1.184 28 C -0.280 4.280 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.259 0.741 37 H 0.261 0.739 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.526 -4.187 19.917 21.699 hybrid contribution 0.479 0.053 -1.019 1.127 sum -7.047 -4.134 18.898 20.588 Atomic orbital electron populations 1.21733 0.91642 1.03306 1.03116 1.23029 0.98380 1.00513 0.92531 0.88223 1.23874 0.83143 0.98577 0.97189 1.88903 1.30932 1.86643 1.24923 1.23604 0.98631 0.99383 0.82563 1.22771 0.96663 0.92331 0.87547 0.87234 1.45779 1.65304 1.16368 1.05742 1.19726 0.78721 0.87049 0.84156 1.90761 1.49044 1.18437 1.82667 1.20440 0.79408 0.88089 0.83964 1.90765 1.48238 1.18722 1.82292 1.43094 1.61127 1.17081 1.06363 1.17455 0.96360 0.90440 0.89162 1.20465 1.10010 0.92737 1.02863 1.20783 0.97124 0.98667 0.94162 1.21131 1.05273 0.95480 1.00334 1.17660 0.89501 0.91601 0.91599 1.19721 1.25079 1.09634 0.98701 0.90216 1.26737 0.99970 0.92223 0.97952 1.69926 1.31293 1.22627 1.18583 0.85361 0.78157 0.79201 0.78071 1.18363 1.18832 1.18394 1.20821 1.06673 0.98983 1.01520 0.91314 0.90079 0.92601 0.90130 0.86685 0.90492 0.90577 0.74099 0.73931 0.87074 0.86661 0.88654 0.89554 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.19 71.98 0.66 -0.50 16 2 C -0.13 -1.38 3.44 -9.50 -0.03 -1.41 16 3 H 0.10 1.05 7.75 -2.39 -0.02 1.03 16 4 C 0.05 0.53 7.18 72.67 0.52 1.05 16 5 O -0.39 -7.37 11.52 -148.98 -1.72 -9.09 16 6 C 0.04 0.66 7.50 72.36 0.54 1.21 16 7 C 0.11 1.83 2.93 45.98 0.13 1.96 16 8 H 0.11 1.85 7.39 -2.39 -0.02 1.83 16 9 N -0.68 -13.99 5.04 -439.27 -2.21 -16.20 16 10 C 0.52 14.35 7.88 87.24 0.69 15.03 16 11 O -0.53 -16.01 16.19 -3.27 -0.05 -16.06 16 12 C 0.50 16.93 7.70 87.24 0.67 17.60 16 13 O -0.52 -19.94 14.09 -3.32 -0.05 -19.98 16 14 N -0.63 -23.19 5.31 -304.97 -1.62 -24.80 16 15 C 0.16 7.15 6.23 38.16 0.24 7.39 16 16 C -0.24 -11.13 8.68 22.59 0.20 -10.93 16 17 C -0.09 -4.23 10.02 22.20 0.22 -4.00 16 18 C -0.20 -10.67 8.79 22.76 0.20 -10.47 16 19 C 0.10 5.36 5.57 -21.31 -0.12 5.24 16 20 C -0.50 -26.79 8.96 23.46 0.21 -26.58 16 21 H 0.08 4.10 8.01 -2.91 -0.02 4.08 16 22 C 0.05 2.50 4.80 85.25 0.41 2.90 16 23 N -0.80 -40.81 11.72 21.82 0.26 -40.56 16 24 Si 0.97 37.09 29.66 68.60 2.03 39.12 16 25 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 26 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 27 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 28 C -0.26 -12.71 9.71 22.86 0.22 -12.48 16 29 H 0.07 0.49 8.09 -2.39 -0.02 0.47 16 30 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.08 0.66 8.01 -2.39 -0.02 0.64 16 33 H 0.12 0.86 8.14 -2.39 -0.02 0.85 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 1.61 7.93 -2.39 -0.02 1.59 16 36 H 0.42 7.96 7.82 -92.71 -0.73 7.24 16 37 H 0.42 13.73 8.30 -92.71 -0.77 12.96 16 38 H 0.11 4.93 6.43 -2.91 -0.02 4.91 16 39 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 40 H 0.10 5.14 6.50 -2.91 -0.02 5.12 16 41 H 0.29 13.33 8.30 -92.71 -0.77 12.57 16 42 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -64.12 356.61 0.98 -63.13 By element: Atomic # 1 Polarization: 38.85 SS G_CDS: -0.42 Total: 38.43 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 4.77 Total: -13.99 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -3.58 Total: -81.57 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -1.82 Total: -45.13 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Total: -64.12 0.98 -63.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121068071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.363 kcal (2) G-P(sol) polarization free energy of solvation -64.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds