Wall clock time and date at job start Tue Mar 31 2020 12:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.79790 * 2 1 4 4 C 1.54990 * 110.90788 * 236.37231 * 2 1 3 5 5 O 1.44380 * 103.48760 * 204.77657 * 4 2 1 6 6 C 1.43746 * 106.97666 * 40.06179 * 5 4 2 7 7 C 1.54093 * 107.29175 * 333.48461 * 6 5 4 8 8 H 1.09003 * 110.48968 * 243.35897 * 7 6 5 9 9 N 1.46496 * 110.49065 * 120.70886 * 7 6 5 10 10 C 1.34771 * 120.00348 * 95.14350 * 9 7 6 11 11 O 1.21369 * 119.99797 * 0.02562 * 10 9 7 12 12 C 1.49356 * 120.00297 * 180.02562 * 10 9 7 13 13 O 1.21374 * 120.00117 * 0.02562 * 12 10 9 14 14 N 1.34781 * 119.99910 * 179.97438 * 12 10 9 15 15 C 1.39736 * 119.99718 * 184.00868 * 14 12 10 16 16 C 1.39349 * 119.95107 * 144.70975 * 15 14 12 17 17 C 1.38466 * 120.42509 * 179.97438 * 16 15 14 18 18 C 1.37698 * 120.32786 * 0.03262 * 17 16 15 19 19 C 1.40745 * 119.89566 * 359.96484 * 18 17 16 20 20 C 1.41414 * 120.20908 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99426 * 33.93267 * 20 19 18 22 22 C 1.39925 * 120.00607 * 213.93311 * 20 19 18 23 23 N 1.30836 * 119.99571 * 5.78378 * 22 20 19 24 24 Si 1.86799 * 120.00287 * 185.78574 * 22 20 19 25 25 H 1.48490 * 109.47168 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47032 * 120.00050 * 24 22 20 27 27 H 1.48506 * 109.46972 * 239.99723 * 24 22 20 28 28 C 1.38299 * 119.95601 * 324.43657 * 15 14 12 29 29 H 1.09003 * 109.47143 * 176.94200 * 1 2 3 30 30 H 1.09001 * 109.47004 * 296.94403 * 1 2 3 31 31 H 1.09001 * 109.47240 * 56.94636 * 1 2 3 32 32 H 1.09003 * 110.61946 * 323.27757 * 4 2 1 33 33 H 1.09002 * 110.62261 * 86.11737 * 4 2 1 34 34 H 1.09001 * 109.87721 * 92.90841 * 6 5 4 35 35 H 1.09004 * 109.87326 * 213.90979 * 6 5 4 36 36 H 0.96999 * 120.00111 * 275.15041 * 9 7 6 37 37 H 0.97000 * 120.00371 * 4.01661 * 14 12 10 38 38 H 1.08004 * 119.78864 * 359.96405 * 16 15 14 39 39 H 1.08003 * 119.83728 * 180.02562 * 17 16 15 40 40 H 1.08003 * 120.05074 * 179.97438 * 18 17 16 41 41 H 0.97006 * 119.99381 * 179.97438 * 23 22 20 42 42 H 1.07998 * 120.16381 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0831 -0.8018 -1.2056 5 8 3.3941 -1.2140 -0.7629 6 6 3.2718 -1.5883 0.6196 7 6 2.0825 -0.8017 1.2037 8 1 2.4209 -0.1258 1.9891 9 7 1.0639 -1.7197 1.7192 10 6 1.0540 -2.0505 3.0256 11 8 1.8887 -1.5874 3.7752 12 6 0.0159 -2.9870 3.5511 13 8 -0.8185 -3.4505 2.8014 14 7 0.0064 -3.3182 4.8575 15 6 -0.9115 -4.2582 5.3333 16 6 -0.5450 -5.1340 6.3533 17 6 -1.4470 -6.0690 6.8326 18 6 -2.7169 -6.1439 6.3054 19 6 -3.1015 -5.2659 5.2748 20 6 -4.4041 -5.3367 4.7290 21 1 -5.2399 -5.6027 5.3592 22 6 -4.6103 -5.0620 3.3725 23 7 -3.5870 -4.8510 2.5850 24 14 -6.3464 -4.9967 2.6861 25 1 -7.3194 -5.2690 3.7741 26 1 -6.6033 -3.6492 2.1172 27 1 -6.4963 -6.0205 1.6208 28 6 -2.1843 -4.3142 4.7951 29 1 -0.3633 -1.0262 -0.0548 30 1 -0.3633 0.4657 0.9161 31 1 -0.3634 0.5605 -0.8614 32 1 1.4562 -1.6699 -1.4093 33 1 2.1556 -0.1666 -2.0884 34 1 3.0826 -2.6589 0.6983 35 1 4.1865 -1.3334 1.1549 36 1 0.3966 -2.0897 1.1202 37 1 0.6367 -2.9040 5.4675 38 1 0.4490 -5.0834 6.7727 39 1 -1.1530 -6.7429 7.6237 40 1 -3.4166 -6.8751 6.6823 41 1 -3.7300 -4.6610 1.6445 42 1 -2.4708 -3.6333 4.0073 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121068073.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:02 Heat of formation + Delta-G solvation = -84.171644 kcal Electronic energy + Delta-G solvation = -26581.580950 eV Core-core repulsion = 22719.752268 eV Total energy + Delta-G solvation = -3861.828682 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.86875 -39.74053 -38.37955 -37.03641 -35.31708 -34.29788 -33.16839 -32.54082 -29.58697 -29.45237 -28.52390 -26.59597 -25.29933 -24.73074 -22.80314 -21.56950 -20.87000 -20.26716 -19.75126 -18.50710 -17.32069 -17.06385 -16.26166 -16.03260 -15.78921 -15.51812 -15.27267 -14.90058 -14.78597 -14.67514 -13.89593 -13.79889 -13.65267 -13.18875 -12.95108 -12.78969 -12.56635 -12.32601 -12.24801 -11.65050 -11.60631 -11.40548 -11.34609 -11.18818 -11.08156 -11.01025 -10.80116 -10.54922 -10.05672 -9.98331 -9.76521 -9.38451 -9.28394 -9.11275 -8.88450 -7.32136 -7.04595 -6.52976 -4.34090 1.62334 2.48929 2.76584 2.96306 3.11897 3.16509 3.18743 3.57761 3.64958 3.93588 4.01051 4.07654 4.41581 4.53824 4.72096 4.79858 4.81353 4.93638 5.08374 5.24374 5.37529 5.42796 5.55817 5.63157 5.64468 5.71386 5.92305 6.10979 6.15403 6.37959 6.52992 6.62449 6.86460 6.87242 7.07152 7.13487 7.30704 7.48023 7.72268 7.80600 7.83200 8.04205 8.15721 8.32769 8.46857 8.72673 8.94849 8.96133 10.35334 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.003816 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.294754 B = 7335.706920 C = 9003.806008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 H 0.100 0.900 4 C 0.047 3.953 5 O -0.375 6.375 6 C 0.035 3.965 7 C 0.111 3.889 8 H 0.112 0.888 9 N -0.696 5.696 10 C 0.514 3.486 11 O -0.526 6.526 12 C 0.484 3.516 13 O -0.462 6.462 14 N -0.638 5.638 15 C 0.129 3.871 16 C -0.251 4.251 17 C -0.085 4.085 18 C -0.226 4.226 19 C 0.119 3.881 20 C -0.470 4.470 21 H 0.077 0.923 22 C 0.070 3.930 23 N -0.777 5.777 24 Si 0.906 3.094 25 H -0.263 1.263 26 H -0.275 1.275 27 H -0.276 1.276 28 C -0.142 4.142 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.416 0.584 37 H 0.407 0.593 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.278 0.722 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.793 9.458 -6.341 14.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 H 0.118 0.882 4 C -0.030 4.030 5 O -0.293 6.293 6 C -0.043 4.043 7 C 0.006 3.994 8 H 0.130 0.870 9 N -0.352 5.352 10 C 0.295 3.705 11 O -0.402 6.402 12 C 0.263 3.737 13 O -0.333 6.333 14 N -0.284 5.284 15 C 0.038 3.962 16 C -0.273 4.273 17 C -0.104 4.104 18 C -0.246 4.246 19 C 0.116 3.884 20 C -0.500 4.500 21 H 0.095 0.905 22 C -0.148 4.148 23 N -0.402 5.402 24 Si 0.731 3.269 25 H -0.187 1.187 26 H -0.200 1.200 27 H -0.201 1.201 28 C -0.163 4.163 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.255 0.745 37 H 0.243 0.757 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.055 9.500 -6.774 14.769 hybrid contribution -0.799 -0.039 -0.236 0.834 sum 8.256 9.461 -7.010 14.381 Atomic orbital electron populations 1.21702 0.92946 1.02746 1.02910 1.23035 0.97645 1.00426 0.94116 0.88213 1.23717 0.84343 0.97858 0.97073 1.88897 1.28989 1.86412 1.25038 1.23695 0.98803 0.99359 0.82416 1.22400 0.88134 0.91503 0.97374 0.86993 1.45884 1.33087 1.46997 1.09276 1.20561 0.85292 0.81800 0.82817 1.90723 1.39078 1.53387 1.57027 1.19951 0.86059 0.83722 0.83981 1.91011 1.35817 1.50314 1.56155 1.43021 1.36028 1.41386 1.07929 1.17654 0.89232 0.91651 0.97693 1.20107 0.99375 1.02736 1.05044 1.20331 0.94117 0.97288 0.98665 1.21142 0.96018 1.02716 1.04692 1.17523 0.93125 0.88315 0.89461 1.19505 0.93904 1.42487 0.94086 0.90525 1.25900 0.98435 0.93065 0.97395 1.69874 1.30834 1.33582 1.05877 0.86297 0.82846 0.78390 0.79330 1.18658 1.20034 1.20115 1.21550 0.90700 1.01088 1.02950 0.91839 0.91553 0.91630 0.91690 0.88530 0.91463 0.88741 0.74488 0.75724 0.89003 0.88862 0.88742 0.91118 0.84261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.52 37.16 0.32 -0.88 16 2 C -0.13 -1.09 3.70 -88.61 -0.33 -1.41 16 3 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.05 0.40 7.17 38.21 0.27 0.67 16 5 O -0.37 -4.15 11.52 -35.23 -0.41 -4.56 16 6 C 0.04 0.37 7.50 37.73 0.28 0.66 16 7 C 0.11 1.15 3.38 -66.41 -0.22 0.93 16 8 H 0.11 1.20 7.41 -51.93 -0.38 0.82 16 9 N -0.70 -8.70 4.30 -52.79 -0.23 -8.92 16 10 C 0.51 8.00 7.89 -11.63 -0.09 7.91 16 11 O -0.53 -8.70 16.05 5.48 0.09 -8.61 16 12 C 0.48 9.18 7.72 -11.63 -0.09 9.09 16 13 O -0.46 -10.19 13.95 5.48 0.08 -10.11 16 14 N -0.64 -12.31 5.32 -10.34 -0.05 -12.37 16 15 C 0.13 2.97 6.28 -83.82 -0.53 2.44 16 16 C -0.25 -5.45 9.97 -39.08 -0.39 -5.84 16 17 C -0.09 -1.87 10.01 -39.69 -0.40 -2.27 16 18 C -0.23 -5.48 9.79 -38.83 -0.38 -5.86 16 19 C 0.12 3.16 5.50 -106.85 -0.59 2.57 16 20 C -0.47 -12.48 9.04 -37.74 -0.34 -12.82 16 21 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 22 C 0.07 1.78 5.31 -17.34 -0.09 1.69 16 23 N -0.78 -20.43 10.97 55.55 0.61 -19.82 16 24 Si 0.91 18.95 29.56 -169.99 -5.03 13.92 16 25 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 27 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 28 C -0.14 -3.68 7.26 -38.67 -0.28 -3.96 16 29 H 0.06 0.57 6.32 -51.93 -0.33 0.24 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.55 8.02 -51.93 -0.42 0.13 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.77 7.93 -51.93 -0.41 0.36 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.42 5.11 6.14 -40.82 -0.25 4.86 16 37 H 0.41 6.77 8.30 -40.82 -0.34 6.43 16 38 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 39 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 40 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 41 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 42 H 0.14 3.82 4.68 -52.49 -0.25 3.58 16 LS Contribution 351.86 15.07 5.30 5.30 Total: -1.00 -30.07 351.86 -7.80 -37.87 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -5.30 Total: 14.40 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -2.85 Total: -7.09 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.33 Total: -41.11 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.24 Total: -23.29 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.07 -7.80 -37.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121068073.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.305 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds