Wall clock time and date at job start Tue Mar 31 2020 12:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.79790 * 2 1 4 4 C 1.54990 * 110.90788 * 236.37231 * 2 1 3 5 5 O 1.44380 * 103.48760 * 204.77657 * 4 2 1 6 6 C 1.43746 * 106.97666 * 40.06179 * 5 4 2 7 7 C 1.54093 * 107.29175 * 333.48461 * 6 5 4 8 8 H 1.09003 * 110.48968 * 243.35897 * 7 6 5 9 9 N 1.46496 * 110.49065 * 120.70886 * 7 6 5 10 10 C 1.34771 * 120.00348 * 95.14350 * 9 7 6 11 11 O 1.21369 * 119.99797 * 0.02562 * 10 9 7 12 12 C 1.49356 * 120.00297 * 180.02562 * 10 9 7 13 13 O 1.21374 * 120.00117 * 0.02562 * 12 10 9 14 14 N 1.34781 * 119.99910 * 179.97438 * 12 10 9 15 15 C 1.39736 * 119.99718 * 184.00868 * 14 12 10 16 16 C 1.39349 * 119.95107 * 144.70975 * 15 14 12 17 17 C 1.38466 * 120.42509 * 179.97438 * 16 15 14 18 18 C 1.37698 * 120.32786 * 0.03262 * 17 16 15 19 19 C 1.40745 * 119.89566 * 359.96484 * 18 17 16 20 20 C 1.41414 * 120.20908 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99426 * 33.93267 * 20 19 18 22 22 C 1.39925 * 120.00607 * 213.93311 * 20 19 18 23 23 N 1.30836 * 119.99571 * 5.78378 * 22 20 19 24 24 Si 1.86799 * 120.00287 * 185.78574 * 22 20 19 25 25 H 1.48490 * 109.47168 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47032 * 120.00050 * 24 22 20 27 27 H 1.48506 * 109.46972 * 239.99723 * 24 22 20 28 28 C 1.38299 * 119.95601 * 324.43657 * 15 14 12 29 29 H 1.09003 * 109.47143 * 176.94200 * 1 2 3 30 30 H 1.09001 * 109.47004 * 296.94403 * 1 2 3 31 31 H 1.09001 * 109.47240 * 56.94636 * 1 2 3 32 32 H 1.09003 * 110.61946 * 323.27757 * 4 2 1 33 33 H 1.09002 * 110.62261 * 86.11737 * 4 2 1 34 34 H 1.09001 * 109.87721 * 92.90841 * 6 5 4 35 35 H 1.09004 * 109.87326 * 213.90979 * 6 5 4 36 36 H 0.96999 * 120.00111 * 275.15041 * 9 7 6 37 37 H 0.97000 * 120.00371 * 4.01661 * 14 12 10 38 38 H 1.08004 * 119.78864 * 359.96405 * 16 15 14 39 39 H 1.08003 * 119.83728 * 180.02562 * 17 16 15 40 40 H 1.08003 * 120.05074 * 179.97438 * 18 17 16 41 41 H 0.97006 * 119.99381 * 179.97438 * 23 22 20 42 42 H 1.07998 * 120.16381 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0831 -0.8018 -1.2056 5 8 3.3941 -1.2140 -0.7629 6 6 3.2718 -1.5883 0.6196 7 6 2.0825 -0.8017 1.2037 8 1 2.4209 -0.1258 1.9891 9 7 1.0639 -1.7197 1.7192 10 6 1.0540 -2.0505 3.0256 11 8 1.8887 -1.5874 3.7752 12 6 0.0159 -2.9870 3.5511 13 8 -0.8185 -3.4505 2.8014 14 7 0.0064 -3.3182 4.8575 15 6 -0.9115 -4.2582 5.3333 16 6 -0.5450 -5.1340 6.3533 17 6 -1.4470 -6.0690 6.8326 18 6 -2.7169 -6.1439 6.3054 19 6 -3.1015 -5.2659 5.2748 20 6 -4.4041 -5.3367 4.7290 21 1 -5.2399 -5.6027 5.3592 22 6 -4.6103 -5.0620 3.3725 23 7 -3.5870 -4.8510 2.5850 24 14 -6.3464 -4.9967 2.6861 25 1 -7.3194 -5.2690 3.7741 26 1 -6.6033 -3.6492 2.1172 27 1 -6.4963 -6.0205 1.6208 28 6 -2.1843 -4.3142 4.7951 29 1 -0.3633 -1.0262 -0.0548 30 1 -0.3633 0.4657 0.9161 31 1 -0.3634 0.5605 -0.8614 32 1 1.4562 -1.6699 -1.4093 33 1 2.1556 -0.1666 -2.0884 34 1 3.0826 -2.6589 0.6983 35 1 4.1865 -1.3334 1.1549 36 1 0.3966 -2.0897 1.1202 37 1 0.6367 -2.9040 5.4675 38 1 0.4490 -5.0834 6.7727 39 1 -1.1530 -6.7429 7.6237 40 1 -3.4166 -6.8751 6.6823 41 1 -3.7300 -4.6610 1.6445 42 1 -2.4708 -3.6333 4.0073 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121068073.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:01 Heat of formation + Delta-G solvation = -104.407339 kcal Electronic energy + Delta-G solvation = -26582.458436 eV Core-core repulsion = 22719.752268 eV Total energy + Delta-G solvation = -3862.706168 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.09596 -40.93531 -39.71847 -38.73744 -36.51003 -35.84468 -34.92445 -33.44524 -31.45198 -30.60507 -30.04086 -27.29453 -27.19267 -26.11875 -23.74593 -23.14016 -22.49063 -21.28702 -21.16122 -20.02515 -19.00497 -18.18122 -17.56028 -17.14858 -17.02988 -16.96701 -16.45731 -16.44222 -16.20898 -15.93527 -15.36615 -15.13332 -14.66511 -14.56627 -14.50846 -14.07154 -13.92328 -13.49741 -13.31724 -13.13617 -13.03419 -12.85918 -12.71751 -12.65738 -12.28130 -12.22576 -12.08116 -11.81322 -11.73782 -11.54742 -11.09087 -10.90052 -10.78935 -10.49428 -10.43263 -9.20813 -8.84953 -8.39215 -6.31976 0.19649 0.95125 1.10835 1.30703 1.39589 1.49801 1.53823 2.14951 2.26090 2.57422 2.85413 2.91155 3.28848 3.40398 3.69323 3.72570 3.75795 4.05344 4.16311 4.39221 4.48208 4.52673 4.63828 4.67019 4.68115 4.81345 4.85891 4.92452 5.00608 5.08607 5.11994 5.17332 5.24015 5.25153 5.40012 5.67563 5.74938 5.86885 5.95379 5.99909 6.16694 6.40545 6.43990 6.63483 6.72746 7.01701 7.04795 7.08577 8.48870 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.003816 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.294754 B = 7335.706920 C = 9003.806008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 H 0.120 0.880 4 C 0.043 3.957 5 O -0.389 6.389 6 C 0.037 3.963 7 C 0.108 3.892 8 H 0.113 0.887 9 N -0.681 5.681 10 C 0.525 3.475 11 O -0.534 6.534 12 C 0.480 3.520 13 O -0.495 6.495 14 N -0.633 5.633 15 C 0.129 3.871 16 C -0.244 4.244 17 C -0.083 4.083 18 C -0.242 4.242 19 C 0.085 3.915 20 C -0.507 4.507 21 H 0.073 0.927 22 C 0.028 3.972 23 N -0.809 5.809 24 Si 0.979 3.021 25 H -0.259 1.259 26 H -0.268 1.268 27 H -0.269 1.269 28 C -0.168 4.168 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.119 0.881 34 H 0.055 0.945 35 H 0.104 0.896 36 H 0.417 0.583 37 H 0.422 0.578 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.101 0.899 41 H 0.280 0.720 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.802 10.273 -6.620 15.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.140 4.140 3 H 0.138 0.862 4 C -0.033 4.033 5 O -0.308 6.308 6 C -0.041 4.041 7 C 0.003 3.997 8 H 0.131 0.869 9 N -0.336 5.336 10 C 0.305 3.695 11 O -0.411 6.411 12 C 0.261 3.739 13 O -0.368 6.368 14 N -0.280 5.280 15 C 0.036 3.964 16 C -0.265 4.265 17 C -0.101 4.101 18 C -0.262 4.262 19 C 0.083 3.917 20 C -0.537 4.537 21 H 0.092 0.908 22 C -0.187 4.187 23 N -0.434 5.434 24 Si 0.800 3.200 25 H -0.183 1.183 26 H -0.193 1.193 27 H -0.194 1.194 28 C -0.189 4.189 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.137 0.863 34 H 0.073 0.927 35 H 0.122 0.878 36 H 0.257 0.743 37 H 0.260 0.740 38 H 0.145 0.855 39 H 0.150 0.850 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.099 10.336 -7.053 16.080 hybrid contribution -0.976 -0.289 -0.111 1.024 sum 9.123 10.047 -7.164 15.346 Atomic orbital electron populations 1.21694 0.93017 1.02225 1.03305 1.23030 0.97410 1.00971 0.92631 0.86226 1.23895 0.83325 0.98219 0.97889 1.88889 1.30345 1.86521 1.25047 1.23649 0.99151 0.98629 0.82640 1.22617 0.87635 0.91170 0.98246 0.86862 1.45889 1.33201 1.46460 1.08042 1.19837 0.84378 0.81462 0.83775 1.90724 1.39146 1.53820 1.57450 1.20589 0.86192 0.83556 0.83593 1.91008 1.37297 1.51604 1.56910 1.42957 1.35586 1.40902 1.08550 1.17788 0.88877 0.92247 0.97483 1.20553 1.00797 1.01335 1.03817 1.20752 0.92975 0.97493 0.98897 1.21363 0.97508 1.02780 1.04580 1.17897 0.93768 0.89323 0.90737 1.19737 0.94218 1.44651 0.95103 0.90834 1.26702 1.02517 0.92226 0.97220 1.69983 1.32856 1.34479 1.06109 0.85213 0.77648 0.78597 0.78518 1.18283 1.19339 1.19430 1.21424 0.92305 1.01603 1.03580 0.92995 0.92520 0.89717 0.91944 0.86282 0.92685 0.87810 0.74306 0.74047 0.85470 0.85015 0.88083 0.90928 0.86483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.52 71.98 0.61 -1.57 16 2 C -0.12 -1.73 3.70 -9.49 -0.04 -1.76 16 3 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 4 C 0.04 0.64 7.17 72.66 0.52 1.16 16 5 O -0.39 -7.97 11.52 -148.98 -1.72 -9.69 16 6 C 0.04 0.74 7.50 72.35 0.54 1.28 16 7 C 0.11 2.07 3.38 45.98 0.16 2.23 16 8 H 0.11 2.23 7.41 -2.39 -0.02 2.21 16 9 N -0.68 -16.64 4.30 -439.28 -1.89 -18.53 16 10 C 0.53 16.10 7.89 87.24 0.69 16.79 16 11 O -0.53 -17.03 16.05 -3.31 -0.05 -17.08 16 12 C 0.48 18.39 7.72 87.24 0.67 19.06 16 13 O -0.50 -22.58 13.95 -3.32 -0.05 -22.63 16 14 N -0.63 -24.20 5.32 -304.98 -1.62 -25.82 16 15 C 0.13 5.89 6.28 38.16 0.24 6.13 16 16 C -0.24 -10.10 9.97 22.59 0.23 -9.88 16 17 C -0.08 -3.47 10.01 22.20 0.22 -3.25 16 18 C -0.24 -11.82 9.79 22.76 0.22 -11.60 16 19 C 0.09 4.70 5.50 -21.31 -0.12 4.58 16 20 C -0.51 -27.99 9.04 23.46 0.21 -27.78 16 21 H 0.07 3.92 7.85 -2.91 -0.02 3.89 16 22 C 0.03 1.47 5.31 85.25 0.45 1.93 16 23 N -0.81 -44.16 10.97 21.82 0.24 -43.92 16 24 Si 0.98 39.78 29.56 68.60 2.03 41.81 16 25 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 26 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 27 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 28 C -0.17 -8.98 7.26 22.86 0.17 -8.81 16 29 H 0.05 0.90 6.32 -2.39 -0.02 0.89 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 0.97 8.02 -2.39 -0.02 0.95 16 33 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 1.23 7.93 -2.39 -0.02 1.21 16 35 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.42 10.26 6.14 -92.71 -0.57 9.70 16 37 H 0.42 13.48 8.30 -92.71 -0.77 12.71 16 38 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 39 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 40 H 0.10 4.64 8.06 -2.91 -0.02 4.61 16 41 H 0.28 14.16 8.30 -92.70 -0.77 13.39 16 42 H 0.12 6.75 4.68 -2.91 -0.01 6.74 16 Total: -1.00 -66.68 351.86 1.46 -65.22 By element: Atomic # 1 Polarization: 42.39 SS G_CDS: -0.26 Total: 42.13 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 4.78 Total: -11.49 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -3.27 Total: -88.27 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -1.82 Total: -49.40 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -66.68 1.46 -65.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121068073.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.188 kcal (2) G-P(sol) polarization free energy of solvation -66.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds