Wall clock time and date at job start Tue Mar 31 2020 13:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21287 * 119.99650 * 2 1 4 4 N 1.34773 * 120.00306 * 180.02562 * 2 1 3 5 5 C 1.47426 * 125.64840 * 359.95005 * 4 2 1 6 6 C 1.54910 * 104.83306 * 204.16888 * 5 4 2 7 7 H 1.08997 * 111.00313 * 204.92109 * 6 5 4 8 8 O 1.42892 * 111.00387 * 81.10515 * 6 5 4 9 9 C 1.55401 * 101.66402 * 323.07822 * 6 5 4 10 10 C 1.47027 * 125.64853 * 180.02562 * 4 2 1 11 11 H 1.08999 * 109.88400 * 59.32784 * 10 4 2 12 12 C 1.50698 * 109.87759 * 298.31683 * 10 4 2 13 13 O 1.21286 * 120.00441 * 341.71211 * 12 10 4 14 14 N 1.34784 * 119.99873 * 161.99379 * 12 10 4 15 15 C 1.39934 * 120.00048 * 174.60957 * 14 12 10 16 16 C 1.39295 * 119.94183 * 145.77736 * 15 14 12 17 17 C 1.38492 * 120.42631 * 180.02562 * 16 15 14 18 18 C 1.37691 * 120.31822 * 0.02562 * 17 16 15 19 19 C 1.40736 * 119.88929 * 359.97438 * 18 17 16 20 20 C 1.41408 * 120.21123 * 179.97438 * 19 18 17 21 21 H 1.07991 * 119.99950 * 205.19130 * 20 19 18 22 22 C 1.39926 * 119.99835 * 25.18782 * 20 19 18 23 23 N 1.30833 * 120.00250 * 16.80102 * 22 20 19 24 24 Si 1.86796 * 120.00265 * 196.79348 * 22 20 19 25 25 H 1.48500 * 109.46808 * 60.00315 * 24 22 20 26 26 H 1.48497 * 109.47544 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47271 * 300.00355 * 24 22 20 28 28 C 1.38243 * 119.94865 * 325.51094 * 15 14 12 29 29 H 1.08993 * 109.46859 * 269.99280 * 1 2 3 30 30 H 1.08998 * 109.47593 * 30.00027 * 1 2 3 31 31 H 1.09000 * 109.46675 * 149.99580 * 1 2 3 32 32 H 1.08991 * 110.36872 * 323.00814 * 5 4 2 33 33 H 1.08999 * 110.36356 * 85.33306 * 5 4 2 34 34 H 0.96698 * 114.00363 * 61.45300 * 8 6 5 35 35 H 1.08998 * 110.69462 * 277.04468 * 9 6 5 36 36 H 1.09007 * 110.84915 * 153.70206 * 9 6 5 37 37 H 0.97000 * 119.99752 * 354.61483 * 14 12 10 38 38 H 1.08001 * 119.79067 * 0.02805 * 16 15 14 39 39 H 1.07997 * 119.83795 * 180.02562 * 17 16 15 40 40 H 1.08003 * 120.05059 * 180.02562 * 18 17 16 41 41 H 0.96999 * 120.00269 * 179.97438 * 23 22 20 42 42 H 1.07996 * 120.16176 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.5731 -2.5103 -0.0001 6 6 2.6548 -3.4348 0.6122 7 1 2.5230 -4.4642 0.2790 8 8 2.6478 -3.3563 2.0389 9 6 3.9584 -2.8223 0.0290 10 6 3.6441 -1.3118 -0.0001 11 1 4.0641 -0.8285 0.8820 12 6 4.2206 -0.6924 -1.2470 13 8 3.5068 -0.4792 -2.2041 14 7 5.5307 -0.3805 -1.3008 15 6 6.0898 0.0892 -2.4946 16 6 7.1133 1.0333 -2.4588 17 6 7.6734 1.5054 -3.6341 18 6 7.2237 1.0463 -4.8519 19 6 6.1902 0.0924 -4.9035 20 6 5.7227 -0.3834 -6.1504 21 1 4.7183 -0.7703 -6.2386 22 6 6.5614 -0.3526 -7.2700 23 7 7.8521 -0.2031 -7.1167 24 14 5.8385 -0.5254 -8.9837 25 1 4.8742 0.5773 -9.2276 26 1 6.9288 -0.4615 -9.9898 27 1 5.1376 -1.8297 -9.0962 28 6 5.6292 -0.3887 -3.7072 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 0.6737 -2.5194 0.6154 33 1 1.3402 -2.8215 -1.0184 34 1 1.8160 -3.6369 2.4443 35 1 4.1436 -3.1975 -0.9775 36 1 4.8083 -3.0267 0.6803 37 1 6.0861 -0.4816 -0.5120 38 1 7.4725 1.3996 -1.5084 39 1 8.4668 2.2371 -3.5953 40 1 7.6639 1.4171 -5.7658 41 1 8.4336 -0.1821 -7.8928 42 1 4.8389 -1.1242 -3.7358 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143036340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:57 Heat of formation + Delta-G solvation = -87.744768 kcal Electronic energy + Delta-G solvation = -26764.172373 eV Core-core repulsion = 22902.188748 eV Total energy + Delta-G solvation = -3861.983624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.79373 -39.01579 -38.09026 -37.02248 -35.35688 -34.37221 -33.02854 -31.89740 -29.78364 -29.68280 -29.14643 -27.70279 -25.25829 -24.24342 -22.07438 -21.43317 -20.84269 -20.04766 -19.03138 -17.97108 -17.68293 -17.10203 -16.93994 -15.66757 -15.45240 -15.29879 -14.89498 -14.71310 -14.59010 -14.35664 -14.33558 -13.62304 -13.15360 -13.10759 -12.86122 -12.78288 -12.73773 -12.30059 -12.15647 -12.07230 -11.85411 -11.60544 -11.28686 -11.11720 -11.08085 -10.87153 -10.66078 -10.45670 -10.12119 -9.84662 -9.63983 -9.41747 -9.10165 -8.98121 -8.57057 -7.40055 -6.86079 -6.67026 -4.29788 2.56041 2.64662 2.81587 2.89452 3.10356 3.14141 3.24733 3.41130 3.65251 3.75242 3.99135 4.08440 4.19773 4.57849 4.69235 4.75126 4.89944 5.04732 5.12266 5.13766 5.22694 5.24315 5.39189 5.53554 5.65497 5.71862 5.77161 6.05870 6.30544 6.45662 6.82564 7.06896 7.09633 7.10860 7.20227 7.29607 7.39563 7.61950 7.77731 8.02669 8.12575 8.16476 8.23636 8.32185 8.67099 8.79145 8.98309 9.03555 10.25788 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.003404 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.477946 B = 8224.508444 C = 8549.391626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.531 3.469 3 O -0.532 6.532 4 N -0.597 5.597 5 C 0.070 3.930 6 C 0.092 3.908 7 H 0.088 0.912 8 O -0.555 6.555 9 C -0.113 4.113 10 C 0.124 3.876 11 H 0.097 0.903 12 C 0.501 3.499 13 O -0.505 6.505 14 N -0.666 5.666 15 C 0.154 3.846 16 C -0.259 4.259 17 C -0.092 4.092 18 C -0.172 4.172 19 C 0.120 3.880 20 C -0.460 4.460 21 H 0.077 0.923 22 C 0.077 3.923 23 N -0.797 5.797 24 Si 0.908 3.092 25 H -0.264 1.264 26 H -0.279 1.279 27 H -0.266 1.266 28 C -0.210 4.210 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.380 0.620 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.397 0.603 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.280 0.720 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.814 -8.806 15.180 20.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.320 3.680 3 O -0.407 6.407 4 N -0.333 5.333 5 C -0.054 4.054 6 C 0.032 3.968 7 H 0.105 0.895 8 O -0.361 6.361 9 C -0.151 4.151 10 C 0.016 3.984 11 H 0.115 0.885 12 C 0.285 3.715 13 O -0.378 6.378 14 N -0.310 5.310 15 C 0.063 3.937 16 C -0.281 4.281 17 C -0.111 4.111 18 C -0.191 4.191 19 C 0.117 3.883 20 C -0.490 4.490 21 H 0.095 0.905 22 C -0.141 4.141 23 N -0.422 5.422 24 Si 0.733 3.267 25 H -0.188 1.188 26 H -0.204 1.204 27 H -0.191 1.191 28 C -0.231 4.231 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.228 0.772 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.231 0.769 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.137 0.863 41 H 0.091 0.909 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.280 -7.791 14.254 19.224 hybrid contribution -0.492 -0.338 -0.340 0.688 sum -10.773 -8.129 13.914 19.384 Atomic orbital electron populations 1.21845 0.91249 1.05075 1.04253 1.20454 0.90300 0.81920 0.75291 1.90769 1.70530 1.30491 1.48915 1.48116 1.05080 1.05881 1.74210 1.23126 0.97073 0.82978 1.02174 1.22988 0.94737 0.97800 0.81262 0.89473 1.86542 1.40951 1.90219 1.18344 1.22728 0.98115 0.91396 1.02909 1.21424 0.82692 0.97076 0.97159 0.88529 1.20674 0.82282 0.79048 0.89470 1.90735 1.58759 1.51117 1.37176 1.43404 1.09134 1.65262 1.13185 1.17429 0.95887 0.96066 0.84352 1.20064 1.05319 1.05645 0.97049 1.20467 0.98737 0.99107 0.92810 1.21341 1.01555 0.99955 0.96298 1.17471 0.90113 0.88905 0.91776 1.19522 0.99933 1.36850 0.92669 0.90531 1.25882 0.94324 0.92500 1.01353 1.69821 1.03789 1.35981 1.32631 0.86374 0.79543 0.79941 0.80872 1.18832 1.20368 1.19073 1.20920 1.06332 1.05284 0.90600 0.89068 0.88699 0.90271 0.89777 0.89854 0.77205 0.88203 0.87972 0.76901 0.89278 0.89040 0.86319 0.90934 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.67 36.01 0.35 -1.25 16 2 C 0.53 8.07 7.35 -10.99 -0.08 7.99 16 3 O -0.53 -10.88 16.90 5.55 0.09 -10.79 16 4 N -0.60 -7.86 2.75 -164.33 -0.45 -8.31 16 5 C 0.07 0.57 6.00 -2.53 -0.02 0.56 16 6 C 0.09 0.67 4.43 -24.45 -0.11 0.56 16 7 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 8 O -0.55 -4.01 13.47 -35.23 -0.47 -4.48 16 9 C -0.11 -1.14 6.22 -24.77 -0.15 -1.30 16 10 C 0.12 1.73 3.25 -68.11 -0.22 1.51 16 11 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 12 C 0.50 9.63 6.00 -10.98 -0.07 9.56 16 13 O -0.50 -12.00 13.88 5.55 0.08 -11.92 16 14 N -0.67 -12.79 5.34 -9.91 -0.05 -12.84 16 15 C 0.15 3.69 6.25 -83.76 -0.52 3.17 16 16 C -0.26 -6.07 9.97 -39.09 -0.39 -6.46 16 17 C -0.09 -2.26 10.02 -39.69 -0.40 -2.65 16 18 C -0.17 -4.67 8.69 -38.84 -0.34 -5.01 16 19 C 0.12 3.41 5.57 -106.85 -0.59 2.82 16 20 C -0.46 -12.92 9.05 -37.74 -0.34 -13.27 16 21 H 0.08 2.12 7.90 -52.49 -0.41 1.70 16 22 C 0.08 1.99 5.16 -17.35 -0.09 1.91 16 23 N -0.80 -21.11 10.94 55.55 0.61 -20.50 16 24 Si 0.91 19.43 29.59 -169.99 -5.03 14.40 16 25 H -0.26 -5.65 7.11 56.52 0.40 -5.24 16 26 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 27 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 28 C -0.21 -5.63 8.39 -38.68 -0.32 -5.96 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.08 0.59 7.18 -51.93 -0.37 0.22 16 32 H 0.08 0.42 7.55 -51.93 -0.39 0.03 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.38 1.03 9.11 45.56 0.42 1.44 16 35 H 0.10 1.07 7.84 -51.93 -0.41 0.67 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.40 6.01 8.82 -40.82 -0.36 5.65 16 38 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 39 H 0.09 1.98 8.06 -52.49 -0.42 1.55 16 40 H 0.12 3.29 6.16 -52.48 -0.32 2.97 16 41 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 42 H 0.10 2.81 6.48 -52.49 -0.34 2.47 16 LS Contribution 354.53 15.07 5.34 5.34 Total: -1.00 -37.88 354.53 -7.90 -45.78 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -4.71 Total: 11.14 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -3.30 Total: -7.81 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.10 Total: -41.66 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.30 Total: -27.19 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.88 -7.90 -45.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143036340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.967 kcal (2) G-P(sol) polarization free energy of solvation -37.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds