Wall clock time and date at job start Tue Mar 31 2020 13:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21287 * 119.99650 * 2 1 4 4 N 1.34773 * 120.00306 * 180.02562 * 2 1 3 5 5 C 1.47426 * 125.64840 * 359.95005 * 4 2 1 6 6 C 1.54910 * 104.83306 * 204.16888 * 5 4 2 7 7 H 1.08997 * 111.00313 * 204.92109 * 6 5 4 8 8 O 1.42892 * 111.00387 * 81.10515 * 6 5 4 9 9 C 1.55401 * 101.66402 * 323.07822 * 6 5 4 10 10 C 1.47027 * 125.64853 * 180.02562 * 4 2 1 11 11 H 1.08999 * 109.88400 * 59.32784 * 10 4 2 12 12 C 1.50698 * 109.87759 * 298.31683 * 10 4 2 13 13 O 1.21286 * 120.00441 * 341.71211 * 12 10 4 14 14 N 1.34784 * 119.99873 * 161.99379 * 12 10 4 15 15 C 1.39934 * 120.00048 * 174.60957 * 14 12 10 16 16 C 1.39295 * 119.94183 * 145.77736 * 15 14 12 17 17 C 1.38492 * 120.42631 * 180.02562 * 16 15 14 18 18 C 1.37691 * 120.31822 * 0.02562 * 17 16 15 19 19 C 1.40736 * 119.88929 * 359.97438 * 18 17 16 20 20 C 1.41408 * 120.21123 * 179.97438 * 19 18 17 21 21 H 1.07991 * 119.99950 * 205.19130 * 20 19 18 22 22 C 1.39926 * 119.99835 * 25.18782 * 20 19 18 23 23 N 1.30833 * 120.00250 * 16.80102 * 22 20 19 24 24 Si 1.86796 * 120.00265 * 196.79348 * 22 20 19 25 25 H 1.48500 * 109.46808 * 60.00315 * 24 22 20 26 26 H 1.48497 * 109.47544 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47271 * 300.00355 * 24 22 20 28 28 C 1.38243 * 119.94865 * 325.51094 * 15 14 12 29 29 H 1.08993 * 109.46859 * 269.99280 * 1 2 3 30 30 H 1.08998 * 109.47593 * 30.00027 * 1 2 3 31 31 H 1.09000 * 109.46675 * 149.99580 * 1 2 3 32 32 H 1.08991 * 110.36872 * 323.00814 * 5 4 2 33 33 H 1.08999 * 110.36356 * 85.33306 * 5 4 2 34 34 H 0.96698 * 114.00363 * 61.45300 * 8 6 5 35 35 H 1.08998 * 110.69462 * 277.04468 * 9 6 5 36 36 H 1.09007 * 110.84915 * 153.70206 * 9 6 5 37 37 H 0.97000 * 119.99752 * 354.61483 * 14 12 10 38 38 H 1.08001 * 119.79067 * 0.02805 * 16 15 14 39 39 H 1.07997 * 119.83795 * 180.02562 * 17 16 15 40 40 H 1.08003 * 120.05059 * 180.02562 * 18 17 16 41 41 H 0.96999 * 120.00269 * 179.97438 * 23 22 20 42 42 H 1.07996 * 120.16176 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.5731 -2.5103 -0.0001 6 6 2.6548 -3.4348 0.6122 7 1 2.5230 -4.4642 0.2790 8 8 2.6478 -3.3563 2.0389 9 6 3.9584 -2.8223 0.0290 10 6 3.6441 -1.3118 -0.0001 11 1 4.0641 -0.8285 0.8820 12 6 4.2206 -0.6924 -1.2470 13 8 3.5068 -0.4792 -2.2041 14 7 5.5307 -0.3805 -1.3008 15 6 6.0898 0.0892 -2.4946 16 6 7.1133 1.0333 -2.4588 17 6 7.6734 1.5054 -3.6341 18 6 7.2237 1.0463 -4.8519 19 6 6.1902 0.0924 -4.9035 20 6 5.7227 -0.3834 -6.1504 21 1 4.7183 -0.7703 -6.2386 22 6 6.5614 -0.3526 -7.2700 23 7 7.8521 -0.2031 -7.1167 24 14 5.8385 -0.5254 -8.9837 25 1 4.8742 0.5773 -9.2276 26 1 6.9288 -0.4615 -9.9898 27 1 5.1376 -1.8297 -9.0962 28 6 5.6292 -0.3887 -3.7072 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 0.6737 -2.5194 0.6154 33 1 1.3402 -2.8215 -1.0184 34 1 1.8160 -3.6369 2.4443 35 1 4.1436 -3.1975 -0.9775 36 1 4.8083 -3.0267 0.6803 37 1 6.0861 -0.4816 -0.5120 38 1 7.4725 1.3996 -1.5084 39 1 8.4668 2.2371 -3.5953 40 1 7.6639 1.4171 -5.7658 41 1 8.4336 -0.1821 -7.8928 42 1 4.8389 -1.1242 -3.7358 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143036340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:56 Heat of formation + Delta-G solvation = -117.861702 kcal Electronic energy + Delta-G solvation = -26765.478341 eV Core-core repulsion = 22902.188748 eV Total energy + Delta-G solvation = -3863.289593 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.99165 -40.50887 -39.14200 -38.71872 -36.31708 -36.09289 -34.89522 -32.93272 -31.79862 -30.73270 -30.16841 -29.16366 -27.29004 -25.31368 -23.50546 -22.83635 -22.30810 -21.56651 -20.36138 -19.50178 -18.78213 -18.30292 -18.01859 -17.43387 -16.91671 -16.56258 -16.48472 -16.18525 -16.06688 -15.39645 -15.10901 -15.06541 -14.95621 -14.63433 -14.11979 -13.87161 -13.74319 -13.53486 -13.50228 -13.26936 -13.06354 -12.99896 -12.93983 -12.79584 -12.69528 -12.21748 -11.99597 -11.91580 -11.58204 -11.35847 -11.19150 -10.99352 -10.88549 -10.71612 -9.75692 -9.44135 -8.80075 -8.63766 -6.40545 0.81934 0.96302 1.34218 1.42082 1.45852 1.48858 1.71006 1.89613 2.18831 2.29492 2.70779 3.10387 3.32808 3.47577 3.66242 3.73261 3.80501 4.01453 4.08403 4.38100 4.41588 4.54848 4.56873 4.57127 4.60667 4.71073 4.77664 4.91061 4.97057 4.99541 5.03775 5.07871 5.10921 5.21113 5.29174 5.71536 5.81391 6.02939 6.06258 6.29688 6.39127 6.57592 6.63950 6.89617 6.94896 6.96787 7.07883 7.25104 8.30907 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.003404 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.477946 B = 8224.508444 C = 8549.391626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.514 3.486 3 O -0.601 6.601 4 N -0.600 5.600 5 C 0.061 3.939 6 C 0.108 3.892 7 H 0.121 0.879 8 O -0.569 6.569 9 C -0.113 4.113 10 C 0.127 3.873 11 H 0.102 0.898 12 C 0.495 3.505 13 O -0.557 6.557 14 N -0.658 5.658 15 C 0.158 3.842 16 C -0.257 4.257 17 C -0.090 4.090 18 C -0.199 4.199 19 C 0.091 3.909 20 C -0.503 4.503 21 H 0.063 0.937 22 C 0.039 3.961 23 N -0.821 5.821 24 Si 0.983 3.017 25 H -0.265 1.265 26 H -0.259 1.259 27 H -0.260 1.260 28 C -0.235 4.235 29 H 0.124 0.876 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.125 0.875 33 H 0.082 0.918 34 H 0.402 0.598 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.418 0.582 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.106 0.894 41 H 0.290 0.710 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.694 -10.390 16.778 22.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.305 3.695 3 O -0.482 6.482 4 N -0.333 5.333 5 C -0.060 4.060 6 C 0.049 3.951 7 H 0.138 0.862 8 O -0.378 6.378 9 C -0.151 4.151 10 C 0.019 3.981 11 H 0.120 0.880 12 C 0.282 3.718 13 O -0.433 6.433 14 N -0.304 5.304 15 C 0.065 3.935 16 C -0.278 4.278 17 C -0.109 4.109 18 C -0.218 4.218 19 C 0.088 3.912 20 C -0.532 4.532 21 H 0.081 0.919 22 C -0.176 4.176 23 N -0.446 5.446 24 Si 0.803 3.197 25 H -0.189 1.189 26 H -0.182 1.182 27 H -0.184 1.184 28 C -0.257 4.257 29 H 0.142 0.858 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.143 0.857 33 H 0.100 0.900 34 H 0.253 0.747 35 H 0.107 0.893 36 H 0.137 0.863 37 H 0.256 0.744 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.124 0.876 41 H 0.101 0.899 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.167 -9.445 15.925 21.621 hybrid contribution -0.200 0.143 -0.692 0.735 sum -11.367 -9.302 15.232 21.160 Atomic orbital electron populations 1.21881 0.87067 1.05885 1.06603 1.21546 0.92484 0.81474 0.73956 1.90722 1.72207 1.32992 1.52233 1.48383 1.04894 1.07458 1.72609 1.23528 0.98862 0.80384 1.03271 1.22905 0.91967 0.98785 0.81489 0.86198 1.86496 1.42840 1.90527 1.17978 1.22779 1.00724 0.88446 1.03163 1.21520 0.83520 0.99230 0.93815 0.87995 1.21789 0.81672 0.77675 0.90640 1.90706 1.59899 1.53100 1.39628 1.43376 1.09787 1.64777 1.12478 1.17562 0.95399 0.95364 0.85191 1.20476 1.04419 1.04585 0.98329 1.20832 0.98931 0.99007 0.92152 1.21315 1.02430 1.01010 0.97086 1.17834 0.91099 0.89731 0.92566 1.19701 1.00054 1.39201 0.94264 0.91858 1.26712 0.94455 0.91424 1.05015 1.69851 1.04839 1.35577 1.34368 0.85260 0.79055 0.79897 0.75506 1.18914 1.18248 1.18406 1.20889 1.06786 1.06190 0.91812 0.85759 0.89696 0.87604 0.85701 0.89952 0.74661 0.89325 0.86304 0.74407 0.85579 0.85897 0.87570 0.89882 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.67 71.24 0.69 -2.03 16 2 C 0.51 15.50 7.35 87.66 0.64 16.15 16 3 O -0.60 -25.50 16.90 -3.05 -0.05 -25.55 16 4 N -0.60 -15.10 2.75 -792.20 -2.18 -17.28 16 5 C 0.06 0.81 6.00 86.86 0.52 1.33 16 6 C 0.11 1.18 4.43 32.07 0.14 1.33 16 7 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 8 O -0.57 -5.90 13.47 -148.98 -2.01 -7.90 16 9 C -0.11 -2.07 6.22 31.87 0.20 -1.87 16 10 C 0.13 3.48 3.25 44.59 0.14 3.62 16 11 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 12 C 0.50 19.54 6.00 87.66 0.53 20.06 16 13 O -0.56 -27.86 13.88 -3.05 -0.04 -27.90 16 14 N -0.66 -25.54 5.34 -303.64 -1.62 -27.16 16 15 C 0.16 7.72 6.25 38.10 0.24 7.96 16 16 C -0.26 -11.86 9.97 22.58 0.23 -11.63 16 17 C -0.09 -4.42 10.02 22.20 0.22 -4.20 16 18 C -0.20 -11.20 8.69 22.75 0.20 -11.00 16 19 C 0.09 5.42 5.57 -21.31 -0.12 5.30 16 20 C -0.50 -29.88 9.05 23.46 0.21 -29.67 16 21 H 0.06 3.76 7.90 -2.92 -0.02 3.74 16 22 C 0.04 2.09 5.16 85.25 0.44 2.53 16 23 N -0.82 -44.53 10.94 21.82 0.24 -44.29 16 24 Si 0.98 40.53 29.59 68.60 2.03 42.56 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 26 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 27 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 28 C -0.24 -13.32 8.39 22.85 0.19 -13.13 16 29 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.11 1.26 7.18 -2.39 -0.02 1.24 16 32 H 0.13 0.65 7.55 -2.39 -0.02 0.63 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.40 0.30 9.11 -74.06 -0.67 -0.38 16 35 H 0.09 1.85 7.84 -2.39 -0.02 1.83 16 36 H 0.12 1.77 8.14 -2.38 -0.02 1.76 16 37 H 0.42 12.32 8.82 -92.71 -0.82 11.51 16 38 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 39 H 0.12 5.13 8.06 -2.91 -0.02 5.11 16 40 H 0.11 6.14 6.16 -2.91 -0.02 6.12 16 41 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 42 H 0.08 4.99 6.48 -2.91 -0.02 4.97 16 Total: -1.00 -90.01 354.53 0.42 -89.59 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: -0.42 Total: 33.19 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 4.47 Total: -15.26 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -3.56 Total: -88.73 kcal Atomic # 8 Polarization: -59.25 SS G_CDS: -2.10 Total: -61.35 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -90.01 0.42 -89.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143036340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.274 kcal (2) G-P(sol) polarization free energy of solvation -90.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds