Wall clock time and date at job start Tue Mar 31 2020 12:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.45036 * 2 1 4 4 O 1.43007 * 109.45081 * 240.04656 * 2 1 3 5 5 C 1.36034 * 116.66506 * 286.31303 * 4 2 1 6 6 C 1.37978 * 120.53267 * 147.19009 * 5 4 2 7 7 C 1.39786 * 119.76503 * 180.02562 * 6 5 4 8 8 C 1.47609 * 120.03340 * 179.97438 * 7 6 5 9 9 O 1.21591 * 119.99435 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00154 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99913 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47330 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47163 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47030 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00021 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99966 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00014 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00061 * 180.02562 * 16 14 13 19 19 H 1.48510 * 109.46974 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47483 * 120.00169 * 18 16 14 21 21 H 1.48504 * 109.47053 * 240.00142 * 18 16 14 22 22 C 1.39726 * 119.94074 * 359.97438 * 7 6 5 23 23 C 1.37809 * 120.05741 * 0.02562 * 22 7 6 24 24 C 1.38822 * 120.02252 * 359.95726 * 23 22 7 25 25 N 1.39753 * 120.56271 * 180.34873 * 24 23 22 26 26 C 1.35163 * 119.00100 * 195.72474 * 25 24 23 27 27 O 1.21275 * 120.08443 * 181.37629 * 26 25 24 28 28 H 1.09000 * 109.47320 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47582 * 299.95401 * 1 2 3 30 30 H 1.09000 * 109.47119 * 59.95115 * 1 2 3 31 31 H 1.07995 * 120.11593 * 0.09962 * 6 5 4 32 32 H 0.96997 * 120.00475 * 0.02562 * 10 8 7 33 33 H 1.08994 * 109.47511 * 300.00644 * 11 10 8 34 34 H 1.09002 * 109.46795 * 60.00623 * 11 10 8 35 35 H 1.09002 * 109.46986 * 300.00328 * 12 11 10 36 36 H 1.08993 * 109.47041 * 60.00143 * 12 11 10 37 37 H 1.09002 * 109.46963 * 299.99762 * 13 12 11 38 38 H 1.08993 * 109.47499 * 59.99842 * 13 12 11 39 39 H 0.96997 * 119.99655 * 180.02562 * 17 16 14 40 40 H 1.07997 * 119.97261 * 180.02562 * 22 7 6 41 41 H 1.07998 * 119.99034 * 179.97438 * 23 22 7 42 42 H 0.97002 * 120.46092 * 15.28527 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0062 -0.6733 -1.1683 5 6 1.8875 -2.0283 -1.1831 6 6 1.6595 -2.6992 -2.3670 7 6 1.5397 -4.0919 -2.3636 8 6 1.2952 -4.8155 -3.6267 9 8 1.1976 -4.2000 -4.6707 10 7 1.1803 -6.1583 -3.6227 11 6 0.9371 -6.8764 -4.8762 12 6 0.8480 -8.3777 -4.5950 13 6 0.5947 -9.1277 -5.9043 14 6 0.5063 -10.6064 -5.6272 15 1 0.6191 -10.9744 -4.6181 16 6 0.2804 -11.4894 -6.6618 17 7 0.1425 -11.0412 -7.8906 18 14 0.1701 -13.3221 -6.3183 19 1 0.3587 -13.5657 -4.8654 20 1 -1.1633 -13.8248 -6.7359 21 1 1.2280 -14.0331 -7.0802 22 6 1.6515 -4.7985 -1.1633 23 6 1.8792 -4.1235 0.0164 24 6 1.9987 -2.7404 0.0134 25 7 2.2368 -2.0452 1.2020 26 6 2.0320 -0.7095 1.2323 27 8 2.2563 -0.0828 2.2460 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5131 0.8904 30 1 -0.3633 0.5146 -0.8895 31 1 1.5752 -2.1503 -3.2933 32 1 1.2578 -6.6493 -2.7897 33 1 0.0006 -6.5333 -5.3158 34 1 1.7559 -6.6843 -5.5697 35 1 1.7844 -8.7212 -4.1553 36 1 0.0291 -8.5695 -3.9018 37 1 -0.3416 -8.7843 -6.3444 38 1 1.4138 -8.9358 -6.5973 39 1 -0.0168 -11.6624 -8.6183 40 1 1.5594 -5.8745 -1.1601 41 1 1.9650 -4.6707 0.9435 42 1 2.5384 -2.5156 1.9949 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151204290.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:23 Heat of formation + Delta-G solvation = -117.574342 kcal Electronic energy + Delta-G solvation = -25177.753778 eV Core-core repulsion = 21314.476647 eV Total energy + Delta-G solvation = -3863.277132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.76842 -41.04729 -39.81110 -38.55101 -36.99086 -36.29018 -35.21298 -33.32956 -32.83693 -31.56256 -30.53076 -28.45719 -26.00796 -25.65071 -24.84204 -23.91483 -22.36925 -22.02933 -20.40299 -20.12828 -19.09313 -18.59265 -18.24591 -17.47638 -17.23713 -16.80066 -16.67646 -16.56400 -16.40826 -15.89285 -15.57836 -15.40398 -15.06365 -14.99410 -14.46100 -14.24200 -14.15435 -13.83998 -13.69836 -13.49730 -13.31595 -13.19661 -12.76904 -12.55904 -12.51266 -12.33531 -12.27808 -11.96171 -11.64081 -11.59841 -11.21890 -11.20991 -10.97673 -10.53856 -10.15313 -9.85730 -9.14168 -8.17438 -6.28440 -0.50584 0.13446 0.94852 1.43534 1.43891 1.56629 1.56878 1.77309 1.95031 2.30926 2.44685 2.67879 2.77539 3.16699 3.43609 3.65946 3.68122 3.85107 3.92493 4.05703 4.14486 4.25217 4.25885 4.51948 4.58034 4.58870 4.64485 4.83589 4.91909 4.98361 5.01330 5.04392 5.16230 5.20994 5.30168 5.38729 5.44148 5.56013 5.60749 5.74593 5.87496 6.11388 6.24706 6.54713 6.58389 6.89914 7.19157 7.41174 8.94792 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.034574 B = 0.001955 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.654955 B =14319.850716 C =14885.021650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.074 3.926 3 H 0.170 0.830 4 O -0.307 6.307 5 C 0.061 3.939 6 C -0.061 4.061 7 C -0.133 4.133 8 C 0.553 3.447 9 O -0.585 6.585 10 N -0.705 5.705 11 C 0.129 3.871 12 C -0.102 4.102 13 C 0.021 3.979 14 C -0.537 4.537 15 H 0.069 0.931 16 C -0.006 4.006 17 N -0.936 5.936 18 Si 0.967 3.033 19 H -0.257 1.257 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.062 4.062 23 C -0.114 4.114 24 C 0.118 3.882 25 N -0.648 5.648 26 C 0.497 3.503 27 O -0.538 6.538 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.416 0.584 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.071 0.929 37 H -0.008 1.008 38 H -0.008 1.008 39 H 0.262 0.738 40 H 0.167 0.833 41 H 0.179 0.821 42 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.718 19.033 22.678 29.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.016 3.984 3 H 0.187 0.813 4 O -0.222 6.222 5 C 0.015 3.985 6 C -0.081 4.081 7 C -0.137 4.137 8 C 0.342 3.658 9 O -0.466 6.466 10 N -0.357 5.357 11 C 0.005 3.995 12 C -0.140 4.140 13 C -0.016 4.016 14 C -0.575 4.575 15 H 0.087 0.913 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.791 3.209 19 H -0.180 1.180 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.081 4.081 23 C -0.134 4.134 24 C 0.021 3.979 25 N -0.295 5.295 26 C 0.285 3.715 27 O -0.414 6.414 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.154 0.846 32 H 0.255 0.745 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.071 0.929 40 H 0.184 0.816 41 H 0.197 0.803 42 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 2.774 19.998 22.099 29.933 hybrid contribution 0.024 -1.273 0.131 1.280 sum 2.799 18.725 22.230 29.200 Atomic orbital electron populations 1.22349 0.90947 1.04025 1.05831 1.23152 0.97778 0.97980 0.79518 0.81324 1.86368 1.79251 1.15877 1.40731 1.18360 1.04539 0.83090 0.92513 1.20474 0.97245 0.93072 0.97271 1.19568 1.07703 0.93115 0.93329 1.18537 0.76175 0.82362 0.88768 1.90781 1.52589 1.68422 1.34830 1.45829 1.71991 1.06110 1.11775 1.21288 1.00348 0.92180 0.85705 1.21604 1.02254 0.91106 0.99010 1.18964 0.95003 0.94516 0.93157 1.21726 1.48454 0.92956 0.94393 0.91326 1.26035 0.95034 1.04335 0.94915 1.70122 1.50548 1.36468 1.00477 0.85374 0.77511 0.79052 0.78936 1.18014 1.20752 1.20790 1.21447 0.95344 1.01591 0.89742 1.20926 1.01739 0.90159 1.00606 1.18328 1.01628 0.93231 0.84741 1.43633 1.64830 1.07947 1.13049 1.21821 0.76500 0.82380 0.90831 1.90803 1.50383 1.65622 1.34605 0.92096 0.88794 0.88430 0.84582 0.74503 0.92967 0.93030 0.91064 0.91012 0.98957 0.98981 0.92904 0.81554 0.80334 0.72976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 9.30 71.98 0.67 -1.05 16 2 C 0.07 0.96 3.81 29.88 0.11 1.08 16 3 H 0.17 1.55 8.14 -2.39 -0.02 1.53 16 4 O -0.31 -5.37 10.18 -93.93 -0.96 -6.33 16 5 C 0.06 1.08 5.84 22.56 0.13 1.21 16 6 C -0.06 -1.26 9.53 22.58 0.22 -1.05 16 7 C -0.13 -2.66 5.88 -20.07 -0.12 -2.77 16 8 C 0.55 15.33 7.76 86.72 0.67 16.00 16 9 O -0.58 -21.72 16.34 -4.00 -0.07 -21.79 16 10 N -0.70 -17.61 5.50 -466.20 -2.57 -20.18 16 11 C 0.13 4.27 5.67 86.38 0.49 4.76 16 12 C -0.10 -3.66 5.27 30.59 0.16 -3.50 16 13 C 0.02 1.07 4.97 29.85 0.15 1.22 16 14 C -0.54 -29.12 9.11 25.60 0.23 -28.89 16 15 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 16 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 17 N -0.94 -56.45 13.29 21.45 0.28 -56.17 16 18 Si 0.97 42.95 29.54 68.60 2.03 44.98 16 19 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 C -0.06 -0.73 9.53 22.53 0.21 -0.51 16 23 C -0.11 -1.00 9.92 22.31 0.22 -0.78 16 24 C 0.12 1.53 6.54 38.37 0.25 1.78 16 25 N -0.65 -7.64 5.46 -302.49 -1.65 -9.29 16 26 C 0.50 7.79 7.19 87.63 0.63 8.42 16 27 O -0.54 -11.57 17.95 -3.02 -0.05 -11.63 16 28 H 0.06 0.69 7.81 -2.39 -0.02 0.68 16 29 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 30 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.14 3.23 7.64 -2.91 -0.02 3.21 16 32 H 0.42 7.06 6.49 -92.71 -0.60 6.46 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 37 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 38 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 39 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 40 H 0.17 1.02 6.38 -2.91 -0.02 1.01 16 41 H 0.18 0.26 8.06 -2.91 -0.02 0.24 16 42 H 0.43 3.13 8.88 -92.71 -0.82 2.30 16 Total: -1.00 -76.73 359.95 1.16 -75.56 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -0.35 Total: 8.78 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 4.50 Total: -3.94 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -3.93 Total: -85.63 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -1.08 Total: -39.74 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -76.73 1.16 -75.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151204290.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.010 kcal (2) G-P(sol) polarization free energy of solvation -76.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds