Wall clock time and date at job start Tue Mar 31 2020 13:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45198 * 109.47455 * 2 1 4 4 C 1.34228 * 117.00296 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00045 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00158 * 180.02562 * 4 3 2 7 7 N 1.46894 * 109.47078 * 174.53404 * 6 4 3 8 8 C 1.46904 * 110.99939 * 287.69064 * 7 6 4 9 9 C 1.50704 * 109.46815 * 160.28754 * 8 7 6 10 10 H 1.07989 * 120.00349 * 4.86153 * 9 8 7 11 11 C 1.37883 * 119.99596 * 184.86317 * 9 8 7 12 12 N 1.31517 * 120.00106 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99745 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47235 * 89.99935 * 13 11 9 15 15 H 1.48503 * 109.46856 * 209.99800 * 13 11 9 16 16 H 1.48496 * 109.47102 * 329.99717 * 13 11 9 17 17 C 1.38798 * 111.00141 * 163.73979 * 7 6 4 18 18 N 1.32402 * 120.10596 * 123.97208 * 17 7 6 19 19 C 1.32319 * 121.98244 * 179.97438 * 18 17 7 20 20 C 1.36663 * 121.77194 * 0.02562 * 19 18 17 21 21 C 1.39387 * 119.18999 * 359.95898 * 20 19 18 22 22 O 1.34365 * 134.58506 * 180.02562 * 21 20 19 23 23 C 1.34590 * 110.87540 * 180.02562 * 22 21 20 24 24 C 1.50702 * 124.95259 * 179.97438 * 23 22 21 25 25 C 1.34074 * 110.10335 * 359.74173 * 23 22 21 26 26 C 1.39941 * 120.10029 * 303.95405 * 17 7 6 27 27 H 1.09000 * 109.47258 * 59.99165 * 1 2 3 28 28 H 1.08992 * 109.47353 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46759 * 299.99912 * 1 2 3 30 30 H 1.09006 * 109.46759 * 240.00088 * 2 1 3 31 31 H 1.09002 * 109.47547 * 120.00384 * 2 1 3 32 32 H 1.09001 * 109.46866 * 54.53509 * 6 4 3 33 33 H 1.09003 * 109.47136 * 294.53694 * 6 4 3 34 34 H 1.09004 * 109.47356 * 280.28621 * 8 7 6 35 35 H 1.08999 * 109.47082 * 40.28704 * 8 7 6 36 36 H 0.97001 * 119.99783 * 180.02562 * 12 11 9 37 37 H 1.07998 * 119.11399 * 180.02562 * 19 18 17 38 38 H 1.08002 * 120.40232 * 179.97438 * 20 19 18 39 39 H 1.09005 * 109.46538 * 359.97438 * 24 23 22 40 40 H 1.08998 * 109.46904 * 119.97441 * 24 23 22 41 41 H 1.08989 * 109.47391 * 239.98110 * 24 23 22 42 42 H 1.07997 * 126.92610 * 180.30309 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9373 0.0000 7 7 5.3820 2.8627 0.1312 8 6 5.7689 2.4668 1.4920 9 6 7.1793 1.9361 1.4788 10 1 7.7603 1.9694 0.5691 11 6 7.7279 1.4081 2.6283 12 7 7.0205 1.3680 3.7363 13 14 9.4764 0.7509 2.6123 14 1 10.4192 1.8438 2.9612 15 1 9.6018 -0.3467 3.6047 16 1 9.7982 0.2331 1.2582 17 6 5.9755 4.0660 -0.2244 18 7 6.7708 4.6920 0.6292 19 6 7.3560 5.8402 0.3289 20 6 7.1718 6.4467 -0.8818 21 6 6.3464 5.8404 -1.8273 22 8 5.9571 6.1490 -3.0758 23 6 5.1312 5.2068 -3.5672 24 6 4.5069 5.2360 -4.9386 25 6 4.9486 4.2358 -2.6609 26 6 5.7353 4.6211 -1.4863 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.5091 3.5005 0.8376 33 1 3.6649 3.4368 -0.9344 34 1 5.7125 3.3324 2.1521 35 1 5.0922 1.6914 1.8510 36 1 7.4066 0.9968 4.5451 37 1 7.9963 6.3107 1.0604 38 1 7.6602 7.3842 -1.1034 39 1 4.8281 6.1350 -5.4648 40 1 4.8203 4.3553 -5.4992 41 1 3.4212 5.2390 -4.8436 42 1 4.3427 3.3489 -2.7733 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157162171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:32 Heat of formation + Delta-G solvation = -20.469937 kcal Electronic energy + Delta-G solvation = -26976.672892 eV Core-core repulsion = 23117.606523 eV Total energy + Delta-G solvation = -3859.066369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.42695 -40.20866 -39.08541 -36.78751 -35.66927 -33.15332 -32.46872 -31.74474 -31.58592 -30.24297 -28.37059 -27.23869 -25.63843 -23.49725 -23.13831 -21.95411 -21.86017 -20.71292 -20.14170 -17.62228 -17.25252 -16.73445 -16.55505 -16.30610 -16.10400 -15.94349 -15.31975 -14.82682 -14.58597 -14.16382 -13.92816 -13.77165 -13.35449 -13.23498 -13.07495 -12.92164 -12.85862 -12.66784 -12.41498 -12.12653 -11.98811 -11.70575 -11.50419 -11.37664 -11.09763 -10.67523 -10.59956 -10.33155 -10.27317 -9.95572 -9.76047 -9.31880 -9.04906 -8.90851 -8.55229 -8.21349 -7.22486 -5.88565 -3.84120 1.13591 1.72242 2.44557 2.63304 2.75602 2.77946 3.42152 3.46601 3.52551 4.07552 4.31617 4.51879 4.60517 4.86949 4.93064 4.95772 5.04491 5.07590 5.14301 5.27971 5.30417 5.32585 5.34413 5.37842 5.49579 5.50550 5.62507 5.64434 5.72947 5.77651 5.82669 5.92855 6.09649 6.22705 6.48120 6.62300 6.70108 6.87060 7.21350 7.34941 7.59579 7.97152 8.10555 8.20260 8.45852 8.68937 9.14049 9.74319 11.23730 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.007451 B = 0.006442 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3757.091867 B = 4345.111221 C = 7417.878142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.367 6.367 4 C 0.456 3.544 5 O -0.462 6.462 6 C 0.067 3.933 7 N -0.456 5.456 8 C 0.197 3.803 9 C -0.472 4.472 10 H 0.056 0.944 11 C 0.056 3.944 12 N -0.904 5.904 13 Si 0.897 3.103 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.276 1.276 17 C 0.397 3.603 18 N -0.489 5.489 19 C 0.148 3.852 20 C -0.211 4.211 21 C 0.105 3.895 22 O -0.192 6.192 23 C 0.004 3.996 24 C -0.073 4.073 25 C -0.175 4.175 26 C -0.213 4.213 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.026 0.974 35 H 0.038 0.962 36 H 0.259 0.741 37 H 0.162 0.838 38 H 0.134 0.866 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.295 7.304 -13.041 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.285 6.285 4 C 0.295 3.705 5 O -0.345 6.345 6 C -0.060 4.060 7 N -0.172 5.172 8 C 0.074 3.926 9 C -0.511 4.511 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.544 5.544 13 Si 0.725 3.275 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.201 1.201 17 C 0.159 3.841 18 N -0.204 5.204 19 C -0.006 4.006 20 C -0.233 4.233 21 C 0.051 3.949 22 O -0.092 6.092 23 C -0.043 4.043 24 C -0.130 4.130 25 C -0.195 4.195 26 C -0.219 4.219 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.133 0.867 34 H 0.043 0.957 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.179 0.821 38 H 0.151 0.849 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.704 6.342 -12.472 17.617 hybrid contribution 0.802 0.047 -0.186 0.825 sum -9.902 6.390 -12.658 17.295 Atomic orbital electron populations 1.21788 0.92943 1.02684 1.03299 1.22955 0.94915 0.80584 1.02747 1.86445 1.24885 1.32160 1.85061 1.23373 0.80358 0.92700 0.74048 1.90773 1.59746 1.42176 1.41804 1.21639 0.88043 0.91320 1.05014 1.58682 1.04124 1.21389 1.33028 1.19991 0.98002 0.95974 0.78607 1.20760 0.96883 1.37589 0.95819 0.92621 1.24820 0.97775 0.96376 0.95402 1.69937 1.36748 1.47176 1.00586 0.86516 0.84996 0.78397 0.77585 1.20813 1.21430 1.20104 1.19228 0.91361 0.86333 0.87226 1.68050 1.11286 1.08208 1.32847 1.22170 0.94776 0.90080 0.93531 1.20492 1.05100 1.04079 0.93677 1.19535 0.97065 0.94458 0.83886 1.83842 1.54163 1.44976 1.26257 1.22236 0.95729 0.89007 0.97279 1.20349 1.00145 1.04001 0.88495 1.22074 1.04399 1.00856 0.92198 1.20315 1.06348 0.98531 0.96695 0.91697 0.90477 0.91528 0.91412 0.91109 0.89795 0.86715 0.95666 0.94394 0.93174 0.82064 0.84852 0.90549 0.89515 0.89523 0.82659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.29 37.16 0.38 -0.98 16 2 C 0.06 0.80 6.19 37.16 0.23 1.03 16 3 O -0.37 -5.69 10.22 -39.25 -0.40 -6.09 16 4 C 0.46 8.53 7.37 36.01 0.27 8.79 16 5 O -0.46 -10.55 15.12 -18.75 -0.28 -10.83 16 6 C 0.07 1.21 5.38 -4.98 -0.03 1.18 16 7 N -0.46 -10.29 4.06 -175.73 -0.71 -11.01 16 8 C 0.20 5.29 3.95 -4.97 -0.02 5.27 16 9 C -0.47 -13.97 8.36 -34.44 -0.29 -14.26 16 10 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.90 -27.72 13.29 55.43 0.74 -26.98 16 13 Si 0.90 23.06 29.54 -169.99 -5.02 18.04 16 14 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 17 C 0.40 8.45 6.15 -154.91 -0.95 7.50 16 18 N -0.49 -10.68 7.93 -12.54 -0.10 -10.77 16 19 C 0.15 2.56 11.08 -17.91 -0.20 2.36 16 20 C -0.21 -3.26 10.08 -39.72 -0.40 -3.66 16 21 C 0.11 1.78 7.49 -38.27 -0.29 1.49 16 22 O -0.19 -2.92 10.57 4.75 0.05 -2.87 16 23 C 0.00 0.06 7.24 -35.77 -0.26 -0.20 16 24 C -0.07 -0.59 10.39 36.01 0.37 -0.21 16 25 C -0.17 -2.61 9.46 -37.71 -0.36 -2.97 16 26 C -0.21 -3.89 5.78 -105.03 -0.61 -4.50 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 31 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 32 H 0.08 1.42 8.05 -51.93 -0.42 1.00 16 33 H 0.12 1.73 4.95 -51.93 -0.26 1.47 16 34 H 0.03 0.72 7.26 -51.93 -0.38 0.34 16 35 H 0.04 1.10 6.61 -51.93 -0.34 0.76 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.16 2.28 8.06 -52.49 -0.42 1.86 16 38 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.16 2.06 7.33 -52.49 -0.38 1.67 16 LS Contribution 358.26 15.07 5.40 5.40 Total: -1.00 -36.28 358.26 -8.12 -44.41 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -5.55 Total: -1.70 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -2.24 Total: 2.41 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.08 Total: -48.76 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.63 Total: -19.79 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.28 -8.12 -44.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157162171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.939 kcal (2) G-P(sol) polarization free energy of solvation -36.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds