Wall clock time and date at job start Tue Mar 31 2020 13:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45198 * 109.47455 * 2 1 4 4 C 1.34228 * 117.00296 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00045 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00158 * 180.02562 * 4 3 2 7 7 N 1.46894 * 109.47078 * 174.53404 * 6 4 3 8 8 C 1.46904 * 110.99939 * 287.69064 * 7 6 4 9 9 C 1.50704 * 109.46815 * 160.28754 * 8 7 6 10 10 H 1.07989 * 120.00349 * 4.86153 * 9 8 7 11 11 C 1.37883 * 119.99596 * 184.86317 * 9 8 7 12 12 N 1.31517 * 120.00106 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99745 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47235 * 89.99935 * 13 11 9 15 15 H 1.48503 * 109.46856 * 209.99800 * 13 11 9 16 16 H 1.48496 * 109.47102 * 329.99717 * 13 11 9 17 17 C 1.38798 * 111.00141 * 163.73979 * 7 6 4 18 18 N 1.32402 * 120.10596 * 123.97208 * 17 7 6 19 19 C 1.32319 * 121.98244 * 179.97438 * 18 17 7 20 20 C 1.36663 * 121.77194 * 0.02562 * 19 18 17 21 21 C 1.39387 * 119.18999 * 359.95898 * 20 19 18 22 22 O 1.34365 * 134.58506 * 180.02562 * 21 20 19 23 23 C 1.34590 * 110.87540 * 180.02562 * 22 21 20 24 24 C 1.50702 * 124.95259 * 179.97438 * 23 22 21 25 25 C 1.34074 * 110.10335 * 359.74173 * 23 22 21 26 26 C 1.39941 * 120.10029 * 303.95405 * 17 7 6 27 27 H 1.09000 * 109.47258 * 59.99165 * 1 2 3 28 28 H 1.08992 * 109.47353 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46759 * 299.99912 * 1 2 3 30 30 H 1.09006 * 109.46759 * 240.00088 * 2 1 3 31 31 H 1.09002 * 109.47547 * 120.00384 * 2 1 3 32 32 H 1.09001 * 109.46866 * 54.53509 * 6 4 3 33 33 H 1.09003 * 109.47136 * 294.53694 * 6 4 3 34 34 H 1.09004 * 109.47356 * 280.28621 * 8 7 6 35 35 H 1.08999 * 109.47082 * 40.28704 * 8 7 6 36 36 H 0.97001 * 119.99783 * 180.02562 * 12 11 9 37 37 H 1.07998 * 119.11399 * 180.02562 * 19 18 17 38 38 H 1.08002 * 120.40232 * 179.97438 * 20 19 18 39 39 H 1.09005 * 109.46538 * 359.97438 * 24 23 22 40 40 H 1.08998 * 109.46904 * 119.97441 * 24 23 22 41 41 H 1.08989 * 109.47391 * 239.98110 * 24 23 22 42 42 H 1.07997 * 126.92610 * 180.30309 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9373 0.0000 7 7 5.3820 2.8627 0.1312 8 6 5.7689 2.4668 1.4920 9 6 7.1793 1.9361 1.4788 10 1 7.7603 1.9694 0.5691 11 6 7.7279 1.4081 2.6283 12 7 7.0205 1.3680 3.7363 13 14 9.4764 0.7509 2.6123 14 1 10.4192 1.8438 2.9612 15 1 9.6018 -0.3467 3.6047 16 1 9.7982 0.2331 1.2582 17 6 5.9755 4.0660 -0.2244 18 7 6.7708 4.6920 0.6292 19 6 7.3560 5.8402 0.3289 20 6 7.1718 6.4467 -0.8818 21 6 6.3464 5.8404 -1.8273 22 8 5.9571 6.1490 -3.0758 23 6 5.1312 5.2068 -3.5672 24 6 4.5069 5.2360 -4.9386 25 6 4.9486 4.2358 -2.6609 26 6 5.7353 4.6211 -1.4863 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.5091 3.5005 0.8376 33 1 3.6649 3.4368 -0.9344 34 1 5.7125 3.3324 2.1521 35 1 5.0922 1.6914 1.8510 36 1 7.4066 0.9968 4.5451 37 1 7.9963 6.3107 1.0604 38 1 7.6602 7.3842 -1.1034 39 1 4.8281 6.1350 -5.4648 40 1 4.8203 4.3553 -5.4992 41 1 3.4212 5.2390 -4.8436 42 1 4.3427 3.3489 -2.7733 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157162171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:31 Heat of formation + Delta-G solvation = -43.642023 kcal Electronic energy + Delta-G solvation = -26977.677709 eV Core-core repulsion = 23117.606523 eV Total energy + Delta-G solvation = -3860.071186 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.65687 -41.67582 -40.51025 -38.22657 -37.20818 -34.85186 -34.05885 -32.94173 -32.69370 -31.50628 -30.14179 -28.59689 -27.12459 -25.27049 -24.22453 -23.47605 -23.09467 -22.03756 -21.60656 -19.06487 -18.73207 -18.55457 -17.79280 -17.72846 -17.51414 -17.27122 -16.89028 -16.48777 -16.15993 -15.59496 -15.28157 -15.20535 -14.60304 -14.34653 -14.23375 -14.13534 -13.99275 -13.71178 -13.62349 -13.58916 -13.38216 -13.11887 -12.86372 -12.70091 -12.53825 -12.52504 -12.48885 -12.08897 -11.77462 -11.53462 -11.38810 -11.20383 -10.64458 -10.45580 -10.31379 -9.91545 -8.65967 -8.15946 -6.19253 -0.15205 0.35970 1.14115 1.28785 1.35003 1.37865 1.45420 1.48783 1.61547 2.39091 2.66728 2.89230 3.18461 3.39846 3.61779 3.65684 3.79595 3.95815 4.01615 4.05909 4.10083 4.12249 4.16629 4.35477 4.37038 4.51806 4.71191 4.73866 4.77099 4.83186 4.91141 4.94040 5.01150 5.07850 5.12919 5.17805 5.40601 5.43627 5.46469 5.52870 5.87372 6.01598 6.23167 6.30383 6.75998 6.82891 7.25984 7.43245 8.96147 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.007451 B = 0.006442 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3757.091867 B = 4345.111221 C = 7417.878142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.051 3.949 3 O -0.357 6.357 4 C 0.463 3.537 5 O -0.511 6.511 6 C 0.067 3.933 7 N -0.471 5.471 8 C 0.223 3.777 9 C -0.482 4.482 10 H 0.037 0.963 11 C 0.005 3.995 12 N -0.934 5.934 13 Si 0.961 3.039 14 H -0.270 1.270 15 H -0.278 1.278 16 H -0.277 1.277 17 C 0.363 3.637 18 N -0.535 5.535 19 C 0.125 3.875 20 C -0.183 4.183 21 C 0.089 3.911 22 O -0.190 6.190 23 C 0.032 3.968 24 C -0.074 4.074 25 C -0.205 4.205 26 C -0.220 4.220 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.147 0.853 34 H 0.001 0.999 35 H 0.007 0.993 36 H 0.262 0.738 37 H 0.186 0.814 38 H 0.174 0.826 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.827 8.671 -15.647 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 O -0.274 6.274 4 C 0.305 3.695 5 O -0.398 6.398 6 C -0.060 4.060 7 N -0.188 5.188 8 C 0.099 3.901 9 C -0.521 4.521 10 H 0.056 0.944 11 C -0.192 4.192 12 N -0.576 5.576 13 Si 0.786 3.214 14 H -0.195 1.195 15 H -0.203 1.203 16 H -0.202 1.202 17 C 0.126 3.874 18 N -0.251 5.251 19 C -0.027 4.027 20 C -0.205 4.205 21 C 0.034 3.966 22 O -0.091 6.091 23 C -0.015 4.015 24 C -0.129 4.129 25 C -0.225 4.225 26 C -0.226 4.226 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.164 0.836 34 H 0.018 0.982 35 H 0.025 0.975 36 H 0.071 0.929 37 H 0.203 0.797 38 H 0.191 0.809 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -11.261 7.754 -15.100 20.370 hybrid contribution 0.875 -0.259 0.479 1.031 sum -10.387 7.495 -14.621 19.438 Atomic orbital electron populations 1.21809 0.89394 1.04519 1.03990 1.23329 0.97595 0.79089 1.02234 1.86449 1.22865 1.33928 1.84191 1.23516 0.81035 0.92360 0.72602 1.90746 1.61073 1.43596 1.44386 1.21776 0.86108 0.91337 1.06770 1.58600 1.06486 1.23468 1.30239 1.19363 0.96083 0.93662 0.80983 1.20913 0.98131 1.37821 0.95204 0.94437 1.25659 1.01969 0.96610 0.94995 1.70049 1.38518 1.47918 1.01136 0.85515 0.80105 0.78184 0.77553 1.19543 1.20340 1.20201 1.19262 0.92728 0.86769 0.88663 1.67886 1.12252 1.10248 1.34716 1.22599 0.95500 0.89331 0.95249 1.20844 1.03012 1.04531 0.92121 1.19785 0.97617 0.94314 0.84855 1.83890 1.54408 1.45483 1.25296 1.23194 0.92994 0.87005 0.98351 1.20665 1.01272 1.05602 0.85405 1.22243 1.05962 1.02570 0.91742 1.20513 1.06768 0.99014 0.96301 0.90371 0.88036 0.91419 0.91052 0.92702 0.89182 0.83607 0.98164 0.97504 0.92898 0.79679 0.80850 0.88961 0.87771 0.86984 0.81480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 10.29 71.98 0.74 -1.56 16 2 C 0.05 1.32 6.19 71.98 0.45 1.77 16 3 O -0.36 -11.17 10.22 -51.40 -0.53 -11.70 16 4 C 0.46 18.04 7.37 71.24 0.53 18.57 16 5 O -0.51 -24.64 15.12 21.96 0.33 -24.31 16 6 C 0.07 2.50 5.38 85.56 0.46 2.96 16 7 N -0.47 -22.37 4.06 -709.88 -2.88 -25.25 16 8 C 0.22 12.79 3.95 85.56 0.34 13.13 16 9 C -0.48 -29.95 8.36 25.60 0.21 -29.74 16 10 H 0.04 2.41 7.81 -2.92 -0.02 2.39 16 11 C 0.00 0.28 5.46 84.66 0.46 0.74 16 12 N -0.93 -59.36 13.29 21.45 0.28 -59.07 16 13 Si 0.96 48.46 29.54 68.60 2.03 50.48 16 14 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 15 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 16 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 17 C 0.36 16.01 6.15 133.33 0.82 16.83 16 18 N -0.54 -24.29 7.93 -193.60 -1.54 -25.82 16 19 C 0.13 4.32 11.08 84.25 0.93 5.26 16 20 C -0.18 -5.33 10.08 22.18 0.22 -5.11 16 21 C 0.09 2.87 7.49 23.12 0.17 3.05 16 22 O -0.19 -5.25 10.57 -5.91 -0.06 -5.31 16 23 C 0.03 0.73 7.24 24.74 0.18 0.91 16 24 C -0.07 -0.85 10.39 71.24 0.74 -0.11 16 25 C -0.21 -5.81 9.46 23.48 0.22 -5.59 16 26 C -0.22 -7.99 5.78 -20.13 -0.12 -8.11 16 27 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.07 1.79 8.13 -2.38 -0.02 1.77 16 31 H 0.05 1.59 8.13 -2.39 -0.02 1.57 16 32 H 0.09 3.20 8.05 -2.39 -0.02 3.18 16 33 H 0.15 4.42 4.95 -2.39 -0.01 4.41 16 34 H 0.00 0.04 7.26 -2.38 -0.02 0.02 16 35 H 0.01 0.43 6.61 -2.39 -0.02 0.42 16 36 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 37 H 0.19 5.16 8.06 -2.91 -0.02 5.14 16 38 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 39 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.17 4.20 7.33 -2.91 -0.02 4.18 16 Total: -1.00 -83.86 358.26 5.04 -78.82 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.04 Total: 9.18 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 6.36 Total: 12.98 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -4.13 Total: -110.15 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -0.26 Total: -41.32 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.48 kcal Total: -83.86 5.04 -78.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157162171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.177 kcal (2) G-P(sol) polarization free energy of solvation -83.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds