Wall clock time and date at job start Tue Mar 31 2020 13:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.47257 * 2 1 4 4 C 1.34971 * 116.99732 * 175.24549 * 3 2 1 5 5 O 1.21704 * 120.00109 * 4.77848 * 4 3 2 6 6 C 1.41250 * 119.99485 * 184.77035 * 4 3 2 7 7 C 1.35427 * 126.14297 * 185.11520 * 6 4 3 8 8 N 1.36783 * 126.15463 * 0.02562 * 7 6 4 9 9 C 1.39294 * 120.00740 * 120.85760 * 8 7 6 10 10 C 1.38657 * 119.57990 * 351.99981 * 9 8 7 11 11 C 1.40800 * 118.78983 * 179.97438 * 10 9 8 12 12 C 1.41540 * 120.99146 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00070 * 327.64253 * 12 11 10 14 14 C 1.40032 * 119.99540 * 147.64793 * 12 11 10 15 15 N 1.30736 * 120.00044 * 353.53257 * 14 12 11 16 16 Si 1.86809 * 119.99751 * 173.54114 * 14 12 11 17 17 H 1.48493 * 109.47047 * 89.99582 * 16 14 12 18 18 H 1.48496 * 109.46812 * 209.99671 * 16 14 12 19 19 H 1.48505 * 109.46886 * 329.99518 * 16 14 12 20 20 C 1.41182 * 118.01079 * 0.02562 * 11 10 9 21 21 C 1.37584 * 119.02440 * 359.97438 * 20 11 10 22 22 N 1.32084 * 121.11776 * 359.75462 * 21 20 11 23 23 C 1.51232 * 107.70160 * 179.86843 * 7 6 4 24 24 H 1.08990 * 110.32576 * 223.52236 * 23 7 6 25 25 C 1.52998 * 109.94945 * 101.76897 * 23 7 6 26 26 O 1.43942 * 105.94592 * 342.74595 * 23 7 6 27 27 C 1.43931 * 104.35891 * 27.88116 * 26 23 7 28 28 H 1.08998 * 109.47226 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46862 * 299.99599 * 1 2 3 30 30 H 1.09002 * 109.47257 * 59.99178 * 1 2 3 31 31 H 1.08999 * 109.47620 * 120.00447 * 2 1 3 32 32 H 1.09008 * 109.46862 * 240.00401 * 2 1 3 33 33 H 0.97003 * 119.99323 * 300.85322 * 8 7 6 34 34 H 1.08005 * 120.60712 * 359.96170 * 10 9 8 35 35 H 0.97009 * 120.00082 * 180.02562 * 15 14 12 36 36 H 1.07994 * 120.48809 * 179.97438 * 20 11 10 37 37 H 1.08003 * 119.44060 * 180.02562 * 21 20 11 38 38 H 1.09006 * 109.47253 * 302.13896 * 25 23 7 39 39 H 1.08994 * 109.47048 * 62.13989 * 25 23 7 40 40 H 1.08999 * 109.47223 * 182.14762 * 25 23 7 41 41 H 1.09002 * 110.16943 * 212.79183 * 27 26 23 42 42 H 1.09000 * 110.16764 * 90.99973 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3405 1.5254 0.0997 5 8 4.0849 0.5626 0.0966 6 6 3.8728 2.8294 0.2073 7 6 5.1866 3.1576 0.2161 8 7 6.2368 2.2863 0.1217 9 6 7.1517 2.4084 -0.9215 10 6 6.9020 3.3046 -1.9496 11 6 7.8382 3.4149 -2.9954 12 6 7.6304 4.3151 -4.0677 13 1 6.6274 4.5302 -4.4055 14 6 8.7253 4.9266 -4.6907 15 7 9.9279 4.7663 -4.2036 16 14 8.4675 5.9714 -6.2176 17 1 8.2244 7.3807 -5.8178 18 1 9.6779 5.9019 -7.0751 19 1 7.2953 5.4621 -6.9738 20 6 8.9905 2.6009 -2.9424 21 6 9.1518 1.7406 -1.8808 22 7 8.2522 1.6705 -0.9162 23 6 5.2841 4.6613 0.3449 24 1 6.0374 5.0519 -0.3391 25 6 5.6315 5.0403 1.7859 26 8 3.9845 5.1731 -0.0033 27 6 3.0781 4.1091 0.3402 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 6.3443 1.5833 0.7814 34 1 6.0055 3.9070 -1.9484 35 1 10.6864 5.1902 -4.6350 36 1 9.7344 2.6527 -3.7235 37 1 10.0309 1.1150 -1.8333 38 1 4.8742 4.6394 2.4598 39 1 6.6053 4.6256 2.0460 40 1 5.6622 6.1259 1.8788 41 1 2.2323 4.0994 -0.3472 42 1 2.7285 4.2297 1.3656 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157384949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:17 Heat of formation + Delta-G solvation = -76.606999 kcal Electronic energy + Delta-G solvation = -26778.625765 eV Core-core repulsion = 22917.125110 eV Total energy + Delta-G solvation = -3861.500654 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -40.99010 -39.73370 -38.55360 -36.65405 -35.56444 -33.98356 -32.23878 -31.26414 -31.11354 -30.71099 -28.34220 -26.08743 -25.73527 -24.80214 -22.77864 -21.98417 -21.68211 -20.75908 -19.41672 -17.87642 -17.67475 -17.01808 -16.59228 -16.08242 -15.93798 -15.48489 -15.11313 -14.47718 -14.25657 -14.14984 -14.03178 -13.77995 -13.41273 -13.14179 -13.01946 -12.88143 -12.61797 -12.50492 -12.43753 -12.03822 -11.81182 -11.64950 -11.48573 -11.43783 -11.24387 -10.98263 -10.45541 -10.43576 -10.37816 -10.18531 -10.05120 -9.75582 -9.47272 -8.57299 -8.18259 -8.06249 -6.94785 -6.78661 -4.68977 0.92201 2.66806 2.79635 2.88484 3.01859 3.06450 3.08861 3.20045 3.44284 3.85419 4.02188 4.55067 4.67464 4.74577 4.83850 4.90329 5.08233 5.17111 5.22394 5.36487 5.47010 5.51434 5.58154 5.61488 5.65738 5.78150 5.83194 5.91067 5.96128 6.05008 6.14654 6.49021 6.55831 6.66725 6.71511 6.76935 6.89506 7.09700 7.28670 7.60076 7.78340 7.86603 7.98925 8.17933 8.41500 8.67237 8.71324 9.44685 10.08653 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013519 B = 0.003714 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.642422 B = 7538.230688 C = 7656.030933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.355 6.355 4 C 0.534 3.466 5 O -0.510 6.510 6 C -0.297 4.297 7 C 0.259 3.741 8 N -0.646 5.646 9 C 0.372 3.628 10 C -0.308 4.308 11 C 0.155 3.845 12 C -0.457 4.457 13 H 0.082 0.918 14 C 0.077 3.923 15 N -0.795 5.795 16 Si 0.915 3.085 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.219 4.219 21 C 0.111 3.889 22 N -0.600 5.600 23 C 0.080 3.920 24 H 0.127 0.873 25 C -0.161 4.161 26 O -0.347 6.347 27 C 0.107 3.893 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.414 0.586 34 H 0.105 0.895 35 H 0.283 0.717 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.743 -1.445 7.965 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.273 6.273 4 C 0.382 3.618 5 O -0.400 6.400 6 C -0.305 4.305 7 C 0.153 3.847 8 N -0.274 5.274 9 C 0.145 3.855 10 C -0.334 4.334 11 C 0.147 3.853 12 C -0.488 4.488 13 H 0.100 0.900 14 C -0.142 4.142 15 N -0.421 5.421 16 Si 0.739 3.261 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.184 1.184 20 C -0.243 4.243 21 C -0.039 4.039 22 N -0.320 5.320 23 C 0.020 3.980 24 H 0.144 0.856 25 C -0.219 4.219 26 O -0.265 6.265 27 C 0.030 3.970 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.254 0.746 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.159 -1.990 8.415 14.117 hybrid contribution -0.018 0.344 -0.962 1.022 sum -11.177 -1.646 7.452 13.534 Atomic orbital electron populations 1.21797 0.92828 1.02722 1.03396 1.22556 0.95127 0.81195 1.02350 1.86180 1.24723 1.31658 1.84734 1.18588 0.80333 0.88958 0.73914 1.90918 1.59476 1.42539 1.47078 1.20550 0.94805 0.94174 1.20934 1.20530 0.86584 0.92444 0.85179 1.40782 1.24808 1.32523 1.29283 1.17800 0.88176 0.93336 0.86230 1.21457 1.05805 1.08235 0.97901 1.17617 0.89413 0.88468 0.89834 1.19579 0.94244 1.21885 1.13111 0.90011 1.25932 0.94430 0.96146 0.97673 1.69732 0.99879 1.35732 1.36722 0.86186 0.79104 0.80115 0.80648 1.19268 1.20025 1.18388 1.22162 1.01990 0.99067 1.01042 1.21728 0.95224 0.96768 0.90149 1.66607 1.04015 1.30003 1.31418 1.22273 0.88244 0.88992 0.98518 0.85558 1.22127 1.02388 1.03055 0.94286 1.89196 1.15582 1.36556 1.85123 1.21621 0.92692 0.81846 1.00859 0.90514 0.91637 0.91473 0.91778 0.91618 0.74605 0.87666 0.90637 0.85440 0.85575 0.92088 0.90908 0.90500 0.88315 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.84 16 2 C 0.06 0.72 6.12 37.16 0.23 0.95 16 3 O -0.36 -5.08 9.91 -41.24 -0.41 -5.48 16 4 C 0.53 8.99 7.70 31.88 0.25 9.24 16 5 O -0.51 -9.93 15.52 -19.42 -0.30 -10.23 16 6 C -0.30 -4.80 6.09 -104.22 -0.63 -5.43 16 7 C 0.26 4.48 4.78 -81.13 -0.39 4.09 16 8 N -0.65 -12.53 4.58 -8.14 -0.04 -12.57 16 9 C 0.37 8.56 7.59 -154.83 -1.18 7.38 16 10 C -0.31 -7.49 8.29 -38.46 -0.32 -7.81 16 11 C 0.16 4.04 5.54 -106.55 -0.59 3.45 16 12 C -0.46 -11.75 9.11 -37.65 -0.34 -12.09 16 13 H 0.08 2.04 7.86 -52.49 -0.41 1.63 16 14 C 0.08 1.85 5.33 -17.35 -0.09 1.76 16 15 N -0.79 -19.69 10.94 55.55 0.61 -19.08 16 16 Si 0.92 18.11 29.57 -169.99 -5.03 13.09 16 17 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 18 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 20 C -0.22 -5.52 8.73 -38.70 -0.34 -5.86 16 21 C 0.11 2.62 11.15 -17.68 -0.20 2.42 16 22 N -0.60 -14.29 10.36 -12.55 -0.13 -14.42 16 23 C 0.08 1.26 3.54 -27.62 -0.10 1.16 16 24 H 0.13 2.24 6.47 -51.93 -0.34 1.91 16 25 C -0.16 -2.03 9.51 37.16 0.35 -1.67 16 26 O -0.35 -5.41 11.45 -35.23 -0.40 -5.82 16 27 C 0.11 1.45 7.19 36.26 0.26 1.71 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 32 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 33 H 0.41 7.71 8.63 -40.82 -0.35 7.36 16 34 H 0.11 2.47 5.91 -52.48 -0.31 2.16 16 35 H 0.28 6.37 8.29 -40.82 -0.34 6.03 16 36 H 0.13 3.26 6.46 -52.49 -0.34 2.92 16 37 H 0.13 2.57 8.06 -52.48 -0.42 2.15 16 38 H 0.06 0.68 8.02 -51.93 -0.42 0.27 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 357.55 15.07 5.39 5.39 Total: -1.00 -29.15 357.55 -8.54 -37.69 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -5.53 Total: 12.97 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -2.71 Total: -1.54 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.44 Total: -46.06 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -1.11 Total: -21.53 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.15 -8.54 -37.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157384949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.914 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.05 seconds