Wall clock time and date at job start Tue Mar 31 2020 13:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.47257 * 2 1 4 4 C 1.34971 * 116.99732 * 175.24549 * 3 2 1 5 5 O 1.21704 * 120.00109 * 4.77848 * 4 3 2 6 6 C 1.41250 * 119.99485 * 184.77035 * 4 3 2 7 7 C 1.35427 * 126.14297 * 185.11520 * 6 4 3 8 8 N 1.36783 * 126.15463 * 0.02562 * 7 6 4 9 9 C 1.39294 * 120.00740 * 120.85760 * 8 7 6 10 10 C 1.38657 * 119.57990 * 351.99981 * 9 8 7 11 11 C 1.40800 * 118.78983 * 179.97438 * 10 9 8 12 12 C 1.41540 * 120.99146 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00070 * 327.64253 * 12 11 10 14 14 C 1.40032 * 119.99540 * 147.64793 * 12 11 10 15 15 N 1.30736 * 120.00044 * 353.53257 * 14 12 11 16 16 Si 1.86809 * 119.99751 * 173.54114 * 14 12 11 17 17 H 1.48493 * 109.47047 * 89.99582 * 16 14 12 18 18 H 1.48496 * 109.46812 * 209.99671 * 16 14 12 19 19 H 1.48505 * 109.46886 * 329.99518 * 16 14 12 20 20 C 1.41182 * 118.01079 * 0.02562 * 11 10 9 21 21 C 1.37584 * 119.02440 * 359.97438 * 20 11 10 22 22 N 1.32084 * 121.11776 * 359.75462 * 21 20 11 23 23 C 1.51232 * 107.70160 * 179.86843 * 7 6 4 24 24 H 1.08990 * 110.32576 * 223.52236 * 23 7 6 25 25 C 1.52998 * 109.94945 * 101.76897 * 23 7 6 26 26 O 1.43942 * 105.94592 * 342.74595 * 23 7 6 27 27 C 1.43931 * 104.35891 * 27.88116 * 26 23 7 28 28 H 1.08998 * 109.47226 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46862 * 299.99599 * 1 2 3 30 30 H 1.09002 * 109.47257 * 59.99178 * 1 2 3 31 31 H 1.08999 * 109.47620 * 120.00447 * 2 1 3 32 32 H 1.09008 * 109.46862 * 240.00401 * 2 1 3 33 33 H 0.97003 * 119.99323 * 300.85322 * 8 7 6 34 34 H 1.08005 * 120.60712 * 359.96170 * 10 9 8 35 35 H 0.97009 * 120.00082 * 180.02562 * 15 14 12 36 36 H 1.07994 * 120.48809 * 179.97438 * 20 11 10 37 37 H 1.08003 * 119.44060 * 180.02562 * 21 20 11 38 38 H 1.09006 * 109.47253 * 302.13896 * 25 23 7 39 39 H 1.08994 * 109.47048 * 62.13989 * 25 23 7 40 40 H 1.08999 * 109.47223 * 182.14762 * 25 23 7 41 41 H 1.09002 * 110.16943 * 212.79183 * 27 26 23 42 42 H 1.09000 * 110.16764 * 90.99973 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3405 1.5254 0.0997 5 8 4.0849 0.5626 0.0966 6 6 3.8728 2.8294 0.2073 7 6 5.1866 3.1576 0.2161 8 7 6.2368 2.2863 0.1217 9 6 7.1517 2.4084 -0.9215 10 6 6.9020 3.3046 -1.9496 11 6 7.8382 3.4149 -2.9954 12 6 7.6304 4.3151 -4.0677 13 1 6.6274 4.5302 -4.4055 14 6 8.7253 4.9266 -4.6907 15 7 9.9279 4.7663 -4.2036 16 14 8.4675 5.9714 -6.2176 17 1 8.2244 7.3807 -5.8178 18 1 9.6779 5.9019 -7.0751 19 1 7.2953 5.4621 -6.9738 20 6 8.9905 2.6009 -2.9424 21 6 9.1518 1.7406 -1.8808 22 7 8.2522 1.6705 -0.9162 23 6 5.2841 4.6613 0.3449 24 1 6.0374 5.0519 -0.3391 25 6 5.6315 5.0403 1.7859 26 8 3.9845 5.1731 -0.0033 27 6 3.0781 4.1091 0.3402 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 6.3443 1.5833 0.7814 34 1 6.0055 3.9070 -1.9484 35 1 10.6864 5.1902 -4.6350 36 1 9.7344 2.6527 -3.7235 37 1 10.0309 1.1150 -1.8333 38 1 4.8742 4.6394 2.4598 39 1 6.6053 4.6256 2.0460 40 1 5.6622 6.1259 1.8788 41 1 2.2323 4.0994 -0.3472 42 1 2.7285 4.2297 1.3656 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157384949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:16 Heat of formation + Delta-G solvation = -92.905053 kcal Electronic energy + Delta-G solvation = -26779.332501 eV Core-core repulsion = 22917.125110 eV Total energy + Delta-G solvation = -3862.207391 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -42.30400 -41.04562 -40.25179 -37.96166 -37.10908 -35.79231 -33.41936 -32.77245 -32.35566 -32.09200 -30.04755 -27.93966 -27.00830 -25.95927 -23.84564 -23.65530 -23.33813 -22.15466 -20.81700 -19.60988 -19.01195 -18.33575 -17.88113 -17.73471 -17.22719 -16.83603 -16.72028 -16.14684 -15.87039 -15.49269 -15.36980 -14.96347 -14.85947 -14.66886 -14.45686 -14.23986 -13.82027 -13.70859 -13.56507 -13.26726 -12.99810 -12.92103 -12.87641 -12.86317 -12.61871 -12.46696 -12.10956 -11.87617 -11.75062 -11.54278 -11.49505 -11.31293 -11.14814 -10.09143 -10.00703 -9.90263 -8.72359 -8.55871 -6.63815 -0.45474 0.81942 1.00526 1.39806 1.52155 1.54263 1.66973 1.79471 1.98167 2.19803 2.74040 2.84128 3.30369 3.50905 3.64948 3.94493 3.99274 4.02589 4.08879 4.11007 4.28365 4.35195 4.40439 4.49708 4.62436 4.65267 4.80383 4.81429 4.85538 4.92857 4.92954 4.96635 5.06575 5.12262 5.14680 5.21354 5.40736 5.41378 5.55526 5.78423 5.96311 6.15580 6.39026 6.56151 6.68682 6.76661 6.80678 7.59629 8.28331 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013519 B = 0.003714 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.642422 B = 7538.230688 C = 7656.030933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.348 6.348 4 C 0.531 3.469 5 O -0.541 6.541 6 C -0.285 4.285 7 C 0.234 3.766 8 N -0.644 5.644 9 C 0.378 3.622 10 C -0.323 4.323 11 C 0.130 3.870 12 C -0.489 4.489 13 H 0.078 0.922 14 C 0.040 3.960 15 N -0.820 5.820 16 Si 0.988 3.012 17 H -0.261 1.261 18 H -0.263 1.263 19 H -0.260 1.260 20 C -0.242 4.242 21 C 0.114 3.886 22 N -0.611 5.611 23 C 0.085 3.915 24 H 0.099 0.901 25 C -0.154 4.154 26 O -0.357 6.357 27 C 0.107 3.893 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.417 0.583 34 H 0.105 0.895 35 H 0.292 0.708 36 H 0.118 0.882 37 H 0.156 0.844 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.482 -0.843 8.466 15.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.265 6.265 4 C 0.381 3.619 5 O -0.433 6.433 6 C -0.292 4.292 7 C 0.129 3.871 8 N -0.272 5.272 9 C 0.150 3.850 10 C -0.349 4.349 11 C 0.122 3.878 12 C -0.520 4.520 13 H 0.096 0.904 14 C -0.177 4.177 15 N -0.445 5.445 16 Si 0.808 3.192 17 H -0.186 1.186 18 H -0.187 1.187 19 H -0.184 1.184 20 C -0.265 4.265 21 C -0.036 4.036 22 N -0.332 5.332 23 C 0.024 3.976 24 H 0.117 0.883 25 C -0.211 4.211 26 O -0.275 6.275 27 C 0.031 3.969 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.257 0.743 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.136 0.864 37 H 0.173 0.827 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.131 0.869 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.952 -1.381 8.953 15.805 hybrid contribution 0.386 0.060 -1.044 1.115 sum -12.566 -1.321 7.908 14.906 Atomic orbital electron populations 1.21813 0.89730 1.04417 1.03913 1.22904 0.97493 0.79803 1.02038 1.86186 1.23008 1.33363 1.83962 1.18786 0.81083 0.88805 0.73227 1.90906 1.60427 1.43582 1.48417 1.20896 0.94813 0.95106 1.18412 1.20833 0.86470 0.93108 0.86655 1.40605 1.24749 1.33159 1.28662 1.17960 0.88187 0.92214 0.86677 1.21459 1.05843 1.09309 0.98322 1.17982 0.90276 0.88961 0.90608 1.19814 0.94831 1.23046 1.14273 0.90390 1.26769 0.93713 0.96906 1.00290 1.69777 1.00699 1.36205 1.37867 0.85115 0.79274 0.78271 0.76573 1.18552 1.18739 1.18355 1.22121 1.02123 1.00404 1.01900 1.22158 0.95892 0.96256 0.89311 1.66763 1.04442 1.30454 1.31527 1.22176 0.87859 0.87689 0.99830 0.88307 1.22101 1.02693 1.04048 0.92271 1.89182 1.15645 1.37058 1.85659 1.21887 0.92056 0.79699 1.03264 0.88242 0.90681 0.91344 0.91551 0.92605 0.74323 0.87686 0.89713 0.86381 0.82660 0.90205 0.91325 0.89088 0.86864 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 10.28 71.98 0.74 -1.20 16 2 C 0.05 1.13 6.12 71.98 0.44 1.57 16 3 O -0.35 -9.39 9.91 -58.89 -0.58 -9.98 16 4 C 0.53 17.47 7.70 68.56 0.53 18.00 16 5 O -0.54 -21.05 15.52 19.17 0.30 -20.75 16 6 C -0.29 -8.90 6.09 -19.61 -0.12 -9.02 16 7 C 0.23 8.03 4.78 41.31 0.20 8.23 16 8 N -0.64 -25.28 4.58 -179.68 -0.82 -26.11 16 9 C 0.38 17.81 7.59 132.82 1.01 18.82 16 10 C -0.32 -16.30 8.29 23.00 0.19 -16.11 16 11 C 0.13 7.03 5.54 -21.12 -0.12 6.91 16 12 C -0.49 -25.96 9.11 23.52 0.21 -25.74 16 13 H 0.08 4.04 7.86 -2.91 -0.02 4.02 16 14 C 0.04 1.93 5.33 85.29 0.45 2.39 16 15 N -0.82 -41.19 10.94 21.84 0.24 -40.95 16 16 Si 0.99 37.03 29.57 68.60 2.03 39.06 16 17 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 18 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 19 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 20 C -0.24 -12.58 8.73 22.84 0.20 -12.38 16 21 C 0.11 5.43 11.15 84.50 0.94 6.38 16 22 N -0.61 -29.47 10.36 -193.61 -2.01 -31.48 16 23 C 0.08 2.64 3.54 30.02 0.11 2.74 16 24 H 0.10 3.64 6.47 -2.39 -0.02 3.62 16 25 C -0.15 -3.64 9.51 71.98 0.68 -2.96 16 26 O -0.36 -10.65 11.45 -148.98 -1.71 -12.36 16 27 C 0.11 2.65 7.19 71.40 0.51 3.17 16 28 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 32 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.42 15.69 8.63 -92.71 -0.80 14.89 16 34 H 0.11 5.15 5.91 -2.91 -0.02 5.14 16 35 H 0.29 13.18 8.29 -92.70 -0.77 12.41 16 36 H 0.12 6.26 6.46 -2.91 -0.02 6.24 16 37 H 0.16 6.28 8.06 -2.91 -0.02 6.26 16 38 H 0.08 1.58 8.02 -2.38 -0.02 1.56 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -64.25 357.55 3.69 -60.56 By element: Atomic # 1 Polarization: 40.96 SS G_CDS: 0.26 Total: 41.22 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 5.98 Total: 0.79 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -2.59 Total: -98.53 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -1.99 Total: -43.09 kcal Atomic # 14 Polarization: 37.03 SS G_CDS: 2.03 Total: 39.06 kcal Total: -64.25 3.69 -60.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157384949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.345 kcal (2) G-P(sol) polarization free energy of solvation -64.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds