Wall clock time and date at job start Tue Mar 31 2020 13:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45195 * 109.47135 * 2 1 4 4 C 1.34231 * 117.00124 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00043 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00075 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.78011 * 59.52758 * 6 4 3 8 8 C 1.51318 * 109.62820 * 299.05092 * 6 4 3 9 9 O 1.20762 * 121.00210 * 9.99357 * 8 6 4 10 10 C 1.51421 * 117.99138 * 190.00914 * 8 6 4 11 11 C 1.53377 * 108.11705 * 49.09767 * 10 8 6 12 12 C 1.53011 * 109.13650 * 307.53651 * 11 10 8 13 13 N 1.46797 * 109.89601 * 62.85413 * 12 11 10 14 14 C 1.39089 * 111.00113 * 170.54920 * 13 12 11 15 15 C 1.38745 * 119.65318 * 56.06976 * 14 13 12 16 16 C 1.40776 * 118.66291 * 180.02562 * 15 14 13 17 17 C 1.41555 * 120.99248 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99970 * 23.19163 * 17 16 15 19 19 C 1.40027 * 120.00591 * 203.18965 * 17 16 15 20 20 N 1.30748 * 119.99415 * 17.26303 * 19 17 16 21 21 Si 1.86794 * 120.00366 * 197.25751 * 19 17 16 22 22 H 1.48508 * 109.46827 * 90.00060 * 21 19 17 23 23 H 1.48497 * 109.47258 * 210.00001 * 21 19 17 24 24 H 1.48494 * 109.47215 * 330.00600 * 21 19 17 25 25 C 1.41189 * 118.01894 * 359.97438 * 16 15 14 26 26 C 1.36556 * 119.14222 * 359.97438 * 25 16 15 27 27 N 1.32095 * 121.26881 * 0.02562 * 26 25 16 28 28 H 1.09003 * 109.46658 * 299.99073 * 1 2 3 29 29 H 1.09001 * 109.47676 * 59.99303 * 1 2 3 30 30 H 1.09002 * 109.47390 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46658 * 240.00927 * 2 1 3 32 32 H 1.08991 * 109.47665 * 120.00629 * 2 1 3 33 33 H 1.09000 * 109.73143 * 289.44074 * 10 8 6 34 34 H 1.08999 * 109.73385 * 168.75284 * 10 8 6 35 35 H 1.08997 * 109.52512 * 187.63836 * 11 10 8 36 36 H 1.09001 * 109.52877 * 67.43413 * 11 10 8 37 37 H 1.09000 * 109.40202 * 302.72711 * 12 11 10 38 38 H 1.08999 * 109.40456 * 182.98565 * 12 11 10 39 39 H 1.07995 * 120.66739 * 0.02562 * 15 14 13 40 40 H 0.97006 * 119.99869 * 179.97438 * 20 19 17 41 41 H 1.08001 * 120.42724 * 180.02562 * 25 16 15 42 42 H 1.08003 * 119.36470 * 180.29985 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5814 3.4765 0.8845 8 6 3.4748 3.6723 -1.2453 9 8 2.6257 3.2109 -1.9694 10 6 4.1258 5.0037 -1.5562 11 6 5.6458 4.8271 -1.4524 12 6 5.9869 4.2019 -0.0982 13 7 5.3898 2.8644 -0.0008 14 6 5.8560 2.1910 1.1234 15 6 5.7112 2.7666 2.3775 16 6 6.1910 2.0670 3.5009 17 6 6.0685 2.6079 4.8034 18 1 5.3078 3.3455 5.0124 19 6 6.9336 2.1867 5.8207 20 7 8.0463 1.5700 5.5189 21 14 6.4979 2.5058 7.6089 22 1 5.7162 1.3602 8.1399 23 1 7.7438 2.6646 8.4012 24 1 5.6873 3.7461 7.7071 25 6 6.7971 0.8094 3.2901 26 6 6.8940 0.3228 2.0179 27 7 6.4329 1.0059 0.9856 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 3.7924 5.7529 -0.8381 34 1 3.8597 5.3166 -2.5658 35 1 6.1321 5.7988 -1.5380 36 1 5.9922 4.1735 -2.2531 37 1 5.5956 4.8321 0.7004 38 1 7.0695 4.1233 0.0020 39 1 5.2398 3.7318 2.4895 40 1 8.6458 1.2785 6.2237 41 1 7.1783 0.2392 4.1244 42 1 7.3526 -0.6410 1.8530 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166735336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:23 Heat of formation + Delta-G solvation = -69.579564 kcal Electronic energy + Delta-G solvation = -27497.483662 eV Core-core repulsion = 23636.287740 eV Total energy + Delta-G solvation = -3861.195922 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.91146 -39.23864 -38.70258 -36.86569 -35.99512 -34.17642 -32.93829 -31.66950 -30.72807 -29.84840 -28.30947 -25.98911 -25.45578 -23.36446 -22.65393 -21.52239 -21.06312 -20.55586 -19.07014 -17.86917 -17.39277 -16.54826 -16.36242 -15.79169 -15.49544 -15.24817 -15.08121 -14.84249 -14.40129 -14.26995 -14.07591 -13.75407 -13.28784 -13.10350 -13.04948 -12.67987 -12.53340 -12.42546 -12.23103 -11.79971 -11.65749 -11.45332 -11.39019 -11.33943 -11.16010 -11.03715 -10.91056 -10.39708 -10.22908 -10.14142 -9.99070 -9.50314 -9.46124 -8.67079 -8.08273 -7.65896 -7.51626 -6.89866 -4.66907 1.77587 2.59136 2.62219 2.72004 2.79424 2.97579 3.00301 3.20553 3.79189 3.92370 3.98060 4.54563 4.66657 4.80247 4.89077 5.03229 5.04284 5.13877 5.20056 5.34628 5.39552 5.51028 5.56950 5.68498 5.73727 5.76583 5.85479 5.95362 6.00715 6.12473 6.15117 6.56768 6.60748 6.74199 6.84212 6.84890 7.05824 7.07086 7.34246 7.35096 7.65005 7.82946 8.07268 8.22663 8.39847 8.67121 8.69388 9.69465 9.99932 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013007 B = 0.004477 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.219206 B = 6252.096921 C = 7175.862068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.065 3.935 3 O -0.357 6.357 4 C 0.464 3.536 5 O -0.445 6.445 6 C 0.056 3.944 7 H 0.109 0.891 8 C 0.382 3.618 9 O -0.435 6.435 10 C -0.164 4.164 11 C -0.113 4.113 12 C 0.063 3.937 13 N -0.467 5.467 14 C 0.293 3.707 15 C -0.305 4.305 16 C 0.134 3.866 17 C -0.458 4.458 18 H 0.080 0.920 19 C 0.079 3.921 20 N -0.784 5.784 21 Si 0.912 3.088 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.205 4.205 26 C 0.091 3.909 27 N -0.516 5.516 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.284 0.716 41 H 0.127 0.873 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.787 5.068 -6.905 11.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.009 4.009 3 O -0.274 6.274 4 C 0.302 3.698 5 O -0.327 6.327 6 C -0.054 4.054 7 H 0.126 0.874 8 C 0.254 3.746 9 O -0.304 6.304 10 C -0.202 4.202 11 C -0.151 4.151 12 C -0.064 4.064 13 N -0.192 5.192 14 C 0.065 3.935 15 C -0.332 4.332 16 C 0.126 3.874 17 C -0.489 4.489 18 H 0.098 0.902 19 C -0.141 4.141 20 N -0.409 5.409 21 Si 0.736 3.264 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.185 1.185 25 C -0.227 4.227 26 C -0.060 4.060 27 N -0.230 5.230 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.144 0.856 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.582 3.701 -8.478 11.960 hybrid contribution -0.255 0.742 2.659 2.773 sum -7.836 4.443 -5.818 10.724 Atomic orbital electron populations 1.21774 0.92935 1.02574 1.03339 1.22915 0.94978 0.80547 1.02418 1.86454 1.24338 1.31991 1.84626 1.22657 0.80857 0.91711 0.74597 1.90828 1.59474 1.41305 1.41047 1.21940 0.91026 0.91998 1.00466 0.87431 1.24457 0.79337 0.87478 0.83296 1.90440 1.26166 1.67569 1.46259 1.22374 0.97507 0.95717 1.04577 1.21666 0.93144 1.01782 0.98514 1.22172 1.00974 0.86919 0.96346 1.58390 1.00568 1.17749 1.42504 1.18618 0.97626 0.91567 0.85674 1.22054 1.15874 1.01815 0.93409 1.17661 0.87413 0.90077 0.92269 1.19576 1.14794 1.21433 0.93080 0.90210 1.25956 0.93446 0.92810 1.01888 1.69773 1.07097 1.28219 1.35828 0.86253 0.79070 0.80073 0.81043 1.19107 1.20098 1.18508 1.22064 1.06029 0.97334 0.97303 1.21650 0.97569 0.97925 0.88855 1.66890 1.14549 1.07003 1.34562 0.91635 0.91564 0.90512 0.91481 0.91426 0.87979 0.88602 0.89584 0.90167 0.93250 0.88924 0.88538 0.90509 0.85565 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.29 37.16 0.38 -1.25 16 2 C 0.07 0.98 6.19 37.16 0.23 1.21 16 3 O -0.36 -6.38 9.55 -44.43 -0.42 -6.81 16 4 C 0.46 9.33 6.59 36.00 0.24 9.57 16 5 O -0.45 -10.41 13.71 -18.75 -0.26 -10.67 16 6 C 0.06 0.97 2.38 -69.61 -0.17 0.81 16 7 H 0.11 1.73 7.59 -51.93 -0.39 1.34 16 8 C 0.38 5.70 6.71 -28.38 -0.19 5.51 16 9 O -0.43 -7.53 16.46 -7.90 -0.13 -7.66 16 10 C -0.16 -1.70 6.24 -27.33 -0.17 -1.87 16 11 C -0.11 -1.22 6.13 -26.53 -0.16 -1.38 16 12 C 0.06 0.92 4.89 -3.87 -0.02 0.90 16 13 N -0.47 -8.89 4.35 -167.92 -0.73 -9.62 16 14 C 0.29 6.75 4.29 -154.98 -0.67 6.08 16 15 C -0.31 -7.19 8.48 -38.44 -0.33 -7.52 16 16 C 0.13 3.48 5.61 -106.55 -0.60 2.88 16 17 C -0.46 -11.60 9.12 -37.65 -0.34 -11.94 16 18 H 0.08 1.94 7.90 -52.48 -0.41 1.52 16 19 C 0.08 1.89 5.20 -17.34 -0.09 1.80 16 20 N -0.78 -19.33 10.91 55.55 0.61 -18.72 16 21 Si 0.91 17.77 29.59 -169.99 -5.03 12.74 16 22 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 23 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 24 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 25 C -0.21 -5.28 8.75 -39.07 -0.34 -5.62 16 26 C 0.09 2.26 11.10 -18.05 -0.20 2.06 16 27 N -0.52 -12.98 8.90 -12.82 -0.11 -13.10 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 32 H 0.07 1.04 8.13 -51.93 -0.42 0.61 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.67 7.25 -51.93 -0.38 0.30 16 38 H 0.09 1.44 8.06 -51.93 -0.42 1.02 16 39 H 0.10 2.07 7.13 -52.49 -0.37 1.70 16 40 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 41 H 0.13 3.29 6.16 -52.49 -0.32 2.96 16 42 H 0.12 2.69 8.06 -52.48 -0.42 2.27 16 LS Contribution 350.44 15.07 5.28 5.28 Total: -1.00 -31.96 350.44 -8.88 -40.85 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.66 Total: 6.47 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -2.42 Total: 1.23 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: -0.24 Total: -41.44 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.81 Total: -25.13 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.96 -8.88 -40.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166735336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.733 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds