Wall clock time and date at job start Tue Mar 31 2020 13:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45196 * 109.47194 * 2 1 4 4 C 1.34226 * 116.99894 * 180.02562 * 3 2 1 5 5 O 1.20819 * 120.00115 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00021 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.77900 * 299.52815 * 6 4 3 8 8 C 1.51320 * 109.62646 * 59.99967 * 6 4 3 9 9 O 1.20768 * 121.00496 * 349.99381 * 8 6 4 10 10 C 1.51412 * 117.99259 * 170.26153 * 8 6 4 11 11 C 1.53845 * 107.88009 * 310.56093 * 10 8 6 12 12 C 1.53012 * 109.04448 * 52.72896 * 11 10 8 13 13 N 1.46808 * 109.89273 * 296.99906 * 12 11 10 14 14 C 1.39082 * 110.99839 * 189.45368 * 13 12 11 15 15 C 1.38750 * 119.65650 * 55.82796 * 14 13 12 16 16 C 1.40780 * 118.66689 * 179.97438 * 15 14 13 17 17 C 1.41546 * 120.99308 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99943 * 336.35183 * 17 16 15 19 19 C 1.40028 * 120.00287 * 156.34616 * 17 16 15 20 20 N 1.30748 * 119.99420 * 342.78696 * 19 17 16 21 21 Si 1.86796 * 120.00363 * 162.77924 * 19 17 16 22 22 H 1.48500 * 109.46954 * 94.71179 * 21 19 17 23 23 H 1.48492 * 109.47594 * 214.71436 * 21 19 17 24 24 H 1.48504 * 109.46919 * 334.71925 * 21 19 17 25 25 C 1.41186 * 118.01243 * 0.02562 * 16 15 14 26 26 C 1.36559 * 119.15018 * 359.97438 * 25 16 15 27 27 N 1.32089 * 121.26493 * 359.74975 * 26 25 16 28 28 H 1.09007 * 109.47129 * 300.00558 * 1 2 3 29 29 H 1.08999 * 109.46740 * 60.00174 * 1 2 3 30 30 H 1.08991 * 109.47161 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47021 * 239.99541 * 2 1 3 32 32 H 1.08999 * 109.46740 * 119.99826 * 2 1 3 33 33 H 1.09000 * 109.73518 * 70.28296 * 10 8 6 34 34 H 1.09004 * 109.73759 * 190.97400 * 10 8 6 35 35 H 1.09000 * 109.68840 * 292.78371 * 11 10 8 36 36 H 1.08996 * 109.50390 * 172.55756 * 11 10 8 37 37 H 1.08995 * 109.40598 * 176.87008 * 12 11 10 38 38 H 1.09001 * 109.33147 * 57.07891 * 12 11 10 39 39 H 1.08001 * 120.66543 * 359.95862 * 15 14 13 40 40 H 0.97001 * 119.99528 * 179.97438 * 20 19 17 41 41 H 1.08007 * 120.42635 * 180.02562 * 25 16 15 42 42 H 1.07996 * 119.36598 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9208 2.9373 -0.0012 7 1 3.5943 3.4711 -0.8937 8 6 3.4570 3.6798 1.2331 9 8 2.5973 3.2228 1.9476 10 6 4.0990 5.0158 1.5420 11 6 5.6249 4.8357 1.4648 12 6 5.9855 4.2025 0.1194 13 7 5.3897 2.8643 0.0214 14 6 5.8721 2.1843 -1.0918 15 6 7.2394 2.0109 -1.2511 16 6 7.7048 1.3189 -2.3853 17 6 9.0893 1.1134 -2.5966 18 1 9.8095 1.7749 -2.1382 19 6 9.5251 0.0524 -3.3999 20 7 8.7128 -0.9338 -3.6774 21 14 11.2668 0.0462 -4.0750 22 1 12.1459 -0.7363 -3.1695 23 1 11.2721 -0.5712 -5.4255 24 1 11.7671 1.4415 -4.1666 25 6 6.7494 0.8360 -3.3058 26 6 5.4232 1.0550 -3.0645 27 7 5.0206 1.7039 -1.9867 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.7754 5.7573 0.8115 34 1 3.8155 5.3376 2.5441 35 1 5.9595 4.1869 2.2743 36 1 6.1109 5.8074 1.5521 37 1 7.0693 4.1232 0.0353 38 1 5.6046 4.8283 -0.6876 39 1 7.9328 2.3992 -0.5198 40 1 9.0146 -1.6686 -4.2341 41 1 7.0632 0.2994 -4.1891 42 1 4.6894 0.6875 -3.7664 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166735337.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:28 Heat of formation + Delta-G solvation = -69.639825 kcal Electronic energy + Delta-G solvation = -27456.906049 eV Core-core repulsion = 23595.707514 eV Total energy + Delta-G solvation = -3861.198535 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.86782 -39.10661 -38.71515 -36.80324 -35.85862 -34.15872 -32.83968 -31.60073 -30.84005 -29.82195 -28.29123 -26.01101 -25.40929 -23.29446 -22.75416 -21.40526 -20.82814 -20.55684 -19.06691 -17.87236 -17.27953 -16.43123 -16.34209 -15.68744 -15.48425 -15.30585 -15.03937 -14.60150 -14.33665 -14.24017 -13.95669 -13.79070 -13.49007 -13.04238 -12.93386 -12.62208 -12.48988 -12.38472 -12.19703 -11.86781 -11.51239 -11.48744 -11.33202 -11.25630 -11.17780 -11.02513 -10.85043 -10.37781 -10.11956 -10.04294 -9.93150 -9.47537 -9.38069 -9.07202 -8.09171 -8.03279 -7.05699 -6.84358 -4.61310 1.81288 2.73609 2.76046 2.87171 2.94494 3.00929 3.05051 3.20985 3.83306 3.97593 4.07425 4.59848 4.68750 4.76202 4.86314 5.08075 5.11796 5.21252 5.25927 5.38407 5.47907 5.48966 5.59277 5.61070 5.68520 5.81719 5.88201 5.92999 6.05238 6.07266 6.11132 6.48447 6.76504 6.82101 6.91375 6.95488 7.11062 7.20035 7.36924 7.44050 7.61002 7.88988 8.16752 8.43173 8.50345 8.73631 8.75604 9.52556 10.05262 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.004201 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.152580 B = 6663.748653 C = 8111.466612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.067 3.933 3 O -0.358 6.358 4 C 0.494 3.506 5 O -0.465 6.465 6 C 0.063 3.937 7 H 0.115 0.885 8 C 0.374 3.626 9 O -0.434 6.434 10 C -0.166 4.166 11 C -0.114 4.114 12 C 0.054 3.946 13 N -0.454 5.454 14 C 0.313 3.687 15 C -0.276 4.276 16 C 0.144 3.856 17 C -0.454 4.454 18 H 0.082 0.918 19 C 0.078 3.922 20 N -0.781 5.781 21 Si 0.911 3.089 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.259 1.259 25 C -0.221 4.221 26 C 0.108 3.892 27 N -0.602 5.602 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.048 0.952 39 H 0.103 0.897 40 H 0.283 0.717 41 H 0.124 0.876 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.950 8.745 4.817 12.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.007 4.007 3 O -0.276 6.276 4 C 0.333 3.667 5 O -0.347 6.347 6 C -0.047 4.047 7 H 0.132 0.868 8 C 0.246 3.754 9 O -0.304 6.304 10 C -0.203 4.203 11 C -0.152 4.152 12 C -0.072 4.072 13 N -0.176 5.176 14 C 0.085 3.915 15 C -0.302 4.302 16 C 0.136 3.864 17 C -0.485 4.485 18 H 0.100 0.900 19 C -0.142 4.142 20 N -0.406 5.406 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.183 1.183 25 C -0.244 4.244 26 C -0.043 4.043 27 N -0.322 5.322 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.066 0.934 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.142 0.858 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.024 7.794 5.658 13.198 hybrid contribution 1.556 -0.250 -1.279 2.030 sum -7.468 7.544 4.379 11.483 Atomic orbital electron populations 1.21767 0.93152 1.02427 1.03203 1.22854 0.94725 0.80818 1.02297 1.86426 1.24566 1.31665 1.84908 1.22109 0.80383 0.91112 0.73108 1.90688 1.59901 1.41809 1.42318 1.21644 0.90873 0.92450 0.99743 0.86828 1.24622 0.79703 0.87704 0.83335 1.90440 1.25757 1.68070 1.46151 1.22475 0.97435 0.95845 1.04593 1.21750 0.93167 1.01845 0.98402 1.22350 1.01631 0.86563 0.96640 1.59324 1.01759 1.17408 1.39147 1.18883 0.90324 0.94912 0.87346 1.21124 0.92372 1.15427 1.01255 1.17646 0.93621 0.86786 0.88375 1.19582 0.92044 1.11012 1.25868 0.90031 1.25979 1.00033 0.94103 0.94054 1.69802 1.37260 1.05985 1.27579 0.86253 0.81667 0.79792 0.78794 1.19406 1.19914 1.18267 1.21849 0.92723 1.07461 1.02355 1.21312 0.94304 0.95712 0.92929 1.66910 1.38600 1.20888 1.05840 0.91689 0.91708 0.90654 0.91420 0.91812 0.88037 0.88613 0.90076 0.89460 0.88021 0.93390 0.87873 0.90585 0.85779 0.86615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.29 37.16 0.38 -1.32 16 2 C 0.07 1.05 6.19 37.16 0.23 1.28 16 3 O -0.36 -6.65 9.50 -44.61 -0.42 -7.08 16 4 C 0.49 10.27 5.71 36.01 0.21 10.47 16 5 O -0.46 -11.40 13.91 -18.75 -0.26 -11.66 16 6 C 0.06 1.12 2.14 -69.61 -0.15 0.97 16 7 H 0.11 1.91 7.97 -51.93 -0.41 1.50 16 8 C 0.37 5.63 6.70 -28.38 -0.19 5.44 16 9 O -0.43 -7.62 16.43 -8.68 -0.14 -7.76 16 10 C -0.17 -1.69 6.27 -27.09 -0.17 -1.86 16 11 C -0.11 -1.17 6.14 -26.29 -0.16 -1.34 16 12 C 0.05 0.76 5.19 -3.87 -0.02 0.74 16 13 N -0.45 -8.60 4.33 -167.91 -0.73 -9.33 16 14 C 0.31 7.19 5.23 -154.97 -0.81 6.38 16 15 C -0.28 -6.73 8.94 -38.43 -0.34 -7.07 16 16 C 0.14 3.79 5.60 -106.56 -0.60 3.19 16 17 C -0.45 -11.69 9.12 -37.65 -0.34 -12.03 16 18 H 0.08 1.99 7.90 -52.48 -0.41 1.57 16 19 C 0.08 1.91 5.19 -17.34 -0.09 1.82 16 20 N -0.78 -19.85 10.93 55.55 0.61 -19.24 16 21 Si 0.91 17.97 29.59 -169.99 -5.03 12.94 16 22 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 24 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 25 C -0.22 -5.71 8.75 -39.07 -0.34 -6.05 16 26 C 0.11 2.61 11.10 -18.05 -0.20 2.41 16 27 N -0.60 -14.39 6.59 -12.82 -0.08 -14.48 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 32 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 1.45 6.55 -51.93 -0.34 1.11 16 38 H 0.05 0.62 8.13 -51.93 -0.42 0.20 16 39 H 0.10 2.34 7.15 -52.49 -0.38 1.96 16 40 H 0.28 6.50 8.29 -40.82 -0.34 6.16 16 41 H 0.12 3.26 6.19 -52.48 -0.33 2.94 16 42 H 0.12 2.53 8.06 -52.49 -0.42 2.10 16 LS Contribution 348.66 15.07 5.25 5.25 Total: -1.00 -32.43 348.66 -9.06 -41.48 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.65 Total: 6.81 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -2.60 Total: 3.06 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: -0.20 Total: -43.05 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.83 Total: -26.50 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.43 -9.06 -41.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166735337.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.156 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds