Wall clock time and date at job start Tue Mar 31 2020 13:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45196 * 109.47194 * 2 1 4 4 C 1.34226 * 116.99894 * 180.02562 * 3 2 1 5 5 O 1.20819 * 120.00115 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00021 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.77900 * 299.52815 * 6 4 3 8 8 C 1.51320 * 109.62646 * 59.99967 * 6 4 3 9 9 O 1.20768 * 121.00496 * 349.99381 * 8 6 4 10 10 C 1.51412 * 117.99259 * 170.26153 * 8 6 4 11 11 C 1.53845 * 107.88009 * 310.56093 * 10 8 6 12 12 C 1.53012 * 109.04448 * 52.72896 * 11 10 8 13 13 N 1.46808 * 109.89273 * 296.99906 * 12 11 10 14 14 C 1.39082 * 110.99839 * 189.45368 * 13 12 11 15 15 C 1.38750 * 119.65650 * 55.82796 * 14 13 12 16 16 C 1.40780 * 118.66689 * 179.97438 * 15 14 13 17 17 C 1.41546 * 120.99308 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99943 * 336.35183 * 17 16 15 19 19 C 1.40028 * 120.00287 * 156.34616 * 17 16 15 20 20 N 1.30748 * 119.99420 * 342.78696 * 19 17 16 21 21 Si 1.86796 * 120.00363 * 162.77924 * 19 17 16 22 22 H 1.48500 * 109.46954 * 94.71179 * 21 19 17 23 23 H 1.48492 * 109.47594 * 214.71436 * 21 19 17 24 24 H 1.48504 * 109.46919 * 334.71925 * 21 19 17 25 25 C 1.41186 * 118.01243 * 0.02562 * 16 15 14 26 26 C 1.36559 * 119.15018 * 359.97438 * 25 16 15 27 27 N 1.32089 * 121.26493 * 359.74975 * 26 25 16 28 28 H 1.09007 * 109.47129 * 300.00558 * 1 2 3 29 29 H 1.08999 * 109.46740 * 60.00174 * 1 2 3 30 30 H 1.08991 * 109.47161 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47021 * 239.99541 * 2 1 3 32 32 H 1.08999 * 109.46740 * 119.99826 * 2 1 3 33 33 H 1.09000 * 109.73518 * 70.28296 * 10 8 6 34 34 H 1.09004 * 109.73759 * 190.97400 * 10 8 6 35 35 H 1.09000 * 109.68840 * 292.78371 * 11 10 8 36 36 H 1.08996 * 109.50390 * 172.55756 * 11 10 8 37 37 H 1.08995 * 109.40598 * 176.87008 * 12 11 10 38 38 H 1.09001 * 109.33147 * 57.07891 * 12 11 10 39 39 H 1.08001 * 120.66543 * 359.95862 * 15 14 13 40 40 H 0.97001 * 119.99528 * 179.97438 * 20 19 17 41 41 H 1.08007 * 120.42635 * 180.02562 * 25 16 15 42 42 H 1.07996 * 119.36598 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9208 2.9373 -0.0012 7 1 3.5943 3.4711 -0.8937 8 6 3.4570 3.6798 1.2331 9 8 2.5973 3.2228 1.9476 10 6 4.0990 5.0158 1.5420 11 6 5.6249 4.8357 1.4648 12 6 5.9855 4.2025 0.1194 13 7 5.3897 2.8643 0.0214 14 6 5.8721 2.1843 -1.0918 15 6 7.2394 2.0109 -1.2511 16 6 7.7048 1.3189 -2.3853 17 6 9.0893 1.1134 -2.5966 18 1 9.8095 1.7749 -2.1382 19 6 9.5251 0.0524 -3.3999 20 7 8.7128 -0.9338 -3.6774 21 14 11.2668 0.0462 -4.0750 22 1 12.1459 -0.7363 -3.1695 23 1 11.2721 -0.5712 -5.4255 24 1 11.7671 1.4415 -4.1666 25 6 6.7494 0.8360 -3.3058 26 6 5.4232 1.0550 -3.0645 27 7 5.0206 1.7039 -1.9867 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.7754 5.7573 0.8115 34 1 3.8155 5.3376 2.5441 35 1 5.9595 4.1869 2.2743 36 1 6.1109 5.8074 1.5521 37 1 7.0693 4.1232 0.0353 38 1 5.6046 4.8283 -0.6876 39 1 7.9328 2.3992 -0.5198 40 1 9.0146 -1.6686 -4.2341 41 1 7.0632 0.2994 -4.1891 42 1 4.6894 0.6875 -3.7664 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166735337.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:27 Heat of formation + Delta-G solvation = -88.712981 kcal Electronic energy + Delta-G solvation = -27457.733123 eV Core-core repulsion = 23595.707514 eV Total energy + Delta-G solvation = -3862.025609 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.31789 -40.61337 -40.26853 -38.33212 -37.39949 -35.94567 -34.09056 -32.87176 -32.63562 -31.28198 -29.82695 -27.85021 -26.73960 -24.62284 -24.04737 -23.10145 -22.41988 -22.04717 -20.28603 -19.57256 -18.82597 -18.01089 -17.84534 -17.26430 -16.92576 -16.80681 -16.33984 -16.08403 -15.85460 -15.57662 -15.55968 -15.11329 -14.92400 -14.60605 -14.28527 -14.19532 -13.87685 -13.62741 -13.43663 -13.20276 -13.02618 -12.91342 -12.83788 -12.73710 -12.54382 -12.16493 -12.01091 -11.92970 -11.82965 -11.55245 -11.52314 -11.23086 -10.84380 -10.52551 -9.97574 -9.96479 -8.83355 -8.66154 -6.57277 0.61946 0.88831 0.97376 1.29810 1.38622 1.51714 1.55767 1.57984 2.17735 2.57762 2.73486 2.83588 3.50148 3.63933 3.71342 3.89800 3.92251 3.95402 4.07271 4.08568 4.15470 4.28069 4.39197 4.58956 4.62178 4.77172 4.82284 4.87265 4.89352 4.93840 4.99677 5.05704 5.08960 5.19065 5.24438 5.28509 5.46430 5.50959 5.59373 5.84458 5.97935 6.19660 6.30717 6.57009 6.80523 6.83554 6.89065 7.64903 8.23997 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.004201 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.152580 B = 6663.748653 C = 8111.466612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.057 3.943 3 O -0.358 6.358 4 C 0.487 3.513 5 O -0.515 6.515 6 C 0.055 3.945 7 H 0.124 0.876 8 C 0.379 3.621 9 O -0.464 6.464 10 C -0.151 4.151 11 C -0.103 4.103 12 C 0.046 3.954 13 N -0.465 5.465 14 C 0.321 3.679 15 C -0.297 4.297 16 C 0.118 3.882 17 C -0.485 4.485 18 H 0.087 0.913 19 C 0.037 3.963 20 N -0.816 5.816 21 Si 0.990 3.010 22 H -0.263 1.263 23 H -0.265 1.265 24 H -0.252 1.252 25 C -0.245 4.245 26 C 0.102 3.898 27 N -0.607 5.607 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.137 0.863 34 H 0.120 0.880 35 H 0.070 0.930 36 H 0.132 0.868 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.112 0.888 40 H 0.292 0.708 41 H 0.112 0.888 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.026 11.063 5.583 14.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.016 4.016 3 O -0.275 6.275 4 C 0.329 3.671 5 O -0.402 6.402 6 C -0.055 4.055 7 H 0.142 0.858 8 C 0.254 3.746 9 O -0.336 6.336 10 C -0.188 4.188 11 C -0.141 4.141 12 C -0.078 4.078 13 N -0.187 5.187 14 C 0.092 3.908 15 C -0.322 4.322 16 C 0.109 3.891 17 C -0.515 4.515 18 H 0.105 0.895 19 C -0.180 4.180 20 N -0.442 5.442 21 Si 0.809 3.191 22 H -0.188 1.188 23 H -0.190 1.190 24 H -0.175 1.175 25 C -0.268 4.268 26 C -0.048 4.048 27 N -0.328 5.328 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.121 0.879 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.155 0.845 34 H 0.138 0.862 35 H 0.089 0.911 36 H 0.150 0.850 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.130 0.870 40 H 0.102 0.898 41 H 0.130 0.870 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.132 10.155 6.447 15.102 hybrid contribution 1.459 -1.008 -1.448 2.290 sum -7.673 9.147 4.999 12.943 Atomic orbital electron populations 1.21775 0.89440 1.04418 1.03759 1.23167 0.97594 0.79529 1.01340 1.86441 1.23577 1.33268 1.84227 1.22883 0.80698 0.92004 0.71506 1.90660 1.61005 1.43588 1.44902 1.21931 0.90013 0.91230 1.02294 0.85845 1.25109 0.79073 0.89102 0.81358 1.90438 1.27362 1.69254 1.46527 1.22551 0.96410 0.92860 1.06978 1.21780 0.93557 1.03414 0.95321 1.22609 1.01128 0.84311 0.99757 1.59294 1.02759 1.20038 1.36644 1.19217 0.89981 0.93938 0.87638 1.21263 0.93421 1.16257 1.01286 1.18036 0.94381 0.87473 0.89182 1.19908 0.92145 1.12033 1.27420 0.89532 1.26930 1.04579 0.93005 0.93496 1.69864 1.39575 1.06699 1.28015 0.85082 0.75716 0.80079 0.78189 1.18780 1.18967 1.17535 1.21801 0.93487 1.08984 1.02538 1.21618 0.94268 0.95362 0.93534 1.67033 1.38725 1.21110 1.05908 0.91146 0.91036 0.87938 0.92720 0.92562 0.84538 0.86214 0.91075 0.84972 0.88668 0.91766 0.86985 0.89762 0.87017 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 10.29 71.98 0.74 -2.22 16 2 C 0.06 1.84 6.19 71.98 0.45 2.28 16 3 O -0.36 -13.48 9.50 -46.26 -0.44 -13.92 16 4 C 0.49 20.68 5.71 71.24 0.41 21.09 16 5 O -0.52 -26.32 13.91 21.98 0.31 -26.01 16 6 C 0.06 1.93 2.14 43.58 0.09 2.02 16 7 H 0.12 4.04 7.97 -2.39 -0.02 4.02 16 8 C 0.38 10.65 6.70 29.53 0.20 10.84 16 9 O -0.46 -15.67 16.43 12.55 0.21 -15.46 16 10 C -0.15 -2.39 6.27 30.36 0.19 -2.20 16 11 C -0.10 -1.71 6.14 30.88 0.19 -1.52 16 12 C 0.05 1.20 5.19 86.32 0.45 1.65 16 13 N -0.46 -17.43 4.33 -685.13 -2.96 -20.40 16 14 C 0.32 15.04 5.23 132.90 0.70 15.73 16 15 C -0.30 -14.92 8.94 23.01 0.21 -14.71 16 16 C 0.12 6.44 5.60 -21.12 -0.12 6.32 16 17 C -0.48 -25.69 9.12 23.52 0.21 -25.48 16 18 H 0.09 4.32 7.90 -2.91 -0.02 4.30 16 19 C 0.04 1.83 5.19 85.29 0.44 2.28 16 20 N -0.82 -42.71 10.93 21.84 0.24 -42.47 16 21 Si 0.99 36.89 29.59 68.60 2.03 38.92 16 22 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 23 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 24 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 25 C -0.24 -13.26 8.75 22.60 0.20 -13.06 16 26 C 0.10 5.18 11.10 84.26 0.94 6.11 16 27 N -0.61 -29.79 6.59 -194.47 -1.28 -31.07 16 28 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.05 1.86 8.13 -2.39 -0.02 1.84 16 32 H 0.06 1.85 8.13 -2.39 -0.02 1.83 16 33 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.10 2.60 6.55 -2.39 -0.02 2.58 16 38 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 39 H 0.11 5.22 7.15 -2.91 -0.02 5.20 16 40 H 0.29 13.68 8.29 -92.71 -0.77 12.91 16 41 H 0.11 6.20 6.19 -2.91 -0.02 6.19 16 42 H 0.13 6.02 8.06 -2.91 -0.02 6.00 16 Total: -1.00 -75.39 348.66 4.42 -70.97 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 1.04 Total: 30.31 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 5.28 Total: 9.13 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -4.01 Total: -93.93 kcal Atomic # 8 Polarization: -55.47 SS G_CDS: 0.07 Total: -55.40 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal Total: -75.39 4.42 -70.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166735337.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.741 kcal (2) G-P(sol) polarization free energy of solvation -75.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds