Wall clock time and date at job start Tue Mar 31 2020 13:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47164 * 2 1 4 4 C 1.34972 * 116.99601 * 179.97438 * 3 2 1 5 5 O 1.21693 * 120.00272 * 0.02562 * 4 3 2 6 6 C 1.41312 * 119.99666 * 180.02562 * 4 3 2 7 7 C 1.35423 * 126.14814 * 185.20747 * 6 4 3 8 8 N 1.36806 * 126.14577 * 0.02562 * 7 6 4 9 9 C 1.38584 * 119.99898 * 120.85836 * 8 7 6 10 10 C 1.39650 * 119.42790 * 353.88760 * 9 8 7 11 11 C 1.36584 * 119.49748 * 180.02562 * 10 9 8 12 12 C 1.41317 * 118.40077 * 359.97438 * 11 10 9 13 13 C 1.41167 * 120.57429 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99394 * 155.60296 * 13 12 11 15 15 C 1.39901 * 120.00422 * 335.60206 * 13 12 11 16 16 N 1.30872 * 119.99737 * 342.59580 * 15 13 12 17 17 Si 1.86803 * 119.99831 * 162.59339 * 15 13 12 18 18 H 1.48504 * 109.46829 * 94.97131 * 17 15 13 19 19 H 1.48502 * 109.46634 * 214.96768 * 17 15 13 20 20 H 1.48497 * 109.47290 * 334.96886 * 17 15 13 21 21 C 1.40798 * 118.84776 * 0.02562 * 12 11 10 22 22 N 1.31438 * 120.36402 * 359.97438 * 21 12 11 23 23 C 1.51224 * 107.70335 * 179.74189 * 7 6 4 24 24 H 1.09004 * 110.16990 * 258.77780 * 23 7 6 25 25 C 1.52999 * 110.16920 * 136.98299 * 23 7 6 26 26 O 1.43935 * 105.88125 * 17.88163 * 23 7 6 27 27 C 1.43940 * 104.35764 * 331.89298 * 26 23 7 28 28 H 1.09003 * 109.47303 * 299.99956 * 1 2 3 29 29 H 1.09000 * 109.46983 * 59.99419 * 1 2 3 30 30 H 1.08996 * 109.47467 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46797 * 239.99970 * 2 1 3 32 32 H 1.09000 * 109.46983 * 120.00581 * 2 1 3 33 33 H 0.96996 * 119.99794 * 300.84904 * 8 7 6 34 34 H 1.07995 * 120.25150 * 0.04769 * 10 9 8 35 35 H 1.08002 * 120.80181 * 179.72647 * 11 10 9 36 36 H 0.97005 * 119.99659 * 180.02562 * 16 15 13 37 37 H 1.08001 * 119.82039 * 179.97438 * 21 12 11 38 38 H 1.09007 * 109.47075 * 59.99832 * 25 23 7 39 39 H 1.08997 * 109.47560 * 179.97438 * 25 23 7 40 40 H 1.08995 * 109.47224 * 300.00499 * 25 23 7 41 41 H 1.08994 * 110.17089 * 147.20941 * 27 26 23 42 42 H 1.08998 * 110.16442 * 268.93191 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3444 1.5240 0.0005 5 8 4.0857 0.5589 0.0005 6 6 3.8846 2.8298 0.0011 7 6 5.1963 3.1517 -0.0976 8 7 6.2366 2.2712 -0.2162 9 6 7.0738 2.3324 -1.3189 10 6 6.7710 3.2096 -2.3624 11 6 7.5949 3.2707 -3.4501 12 6 8.7344 2.4354 -3.4779 13 6 9.6166 2.4608 -4.5797 14 1 10.6446 2.1535 -4.4554 15 6 9.1595 2.8839 -5.8323 16 7 7.8750 2.9293 -6.0790 17 14 10.3825 3.3841 -7.1528 18 1 10.6568 2.2240 -8.0384 19 1 9.8159 4.4971 -7.9561 20 1 11.6470 3.8287 -6.5135 21 6 8.9740 1.5766 -2.3882 22 7 8.1495 1.5560 -1.3647 23 6 5.3038 4.6597 -0.0601 24 1 5.4457 5.0515 -1.0674 25 6 6.4659 5.0835 0.8403 26 8 4.0571 5.1300 0.4843 27 6 3.1019 4.1188 0.1142 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 6.3882 1.6042 0.4715 34 1 5.8924 3.8353 -2.3097 35 1 7.3785 3.9383 -4.2710 36 1 7.5581 3.2223 -6.9477 37 1 9.8399 0.9312 -2.3932 38 1 7.3962 4.6687 0.4522 39 1 6.5333 6.1712 0.8588 40 1 6.2964 4.7124 1.8510 41 1 2.3335 4.0286 0.8820 42 1 2.6469 4.3649 -0.8452 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168160304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:36 Heat of formation + Delta-G solvation = -88.578446 kcal Electronic energy + Delta-G solvation = -26615.487004 eV Core-core repulsion = 22753.467229 eV Total energy + Delta-G solvation = -3862.019775 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.24262 -41.03158 -40.25799 -37.93743 -37.16235 -35.63718 -33.47730 -32.83730 -32.26896 -32.22282 -30.92473 -27.44756 -26.32726 -25.96962 -24.14582 -23.60761 -23.33450 -22.15883 -20.74749 -19.34043 -18.97165 -18.49002 -18.21880 -17.80416 -17.16374 -17.12095 -16.94615 -16.10807 -15.70518 -15.43901 -15.15390 -15.10300 -14.79132 -14.60893 -14.41050 -13.93215 -13.74451 -13.59352 -13.53084 -13.27676 -13.12030 -12.97055 -12.82623 -12.81629 -12.75654 -12.47050 -12.33773 -12.11131 -11.76706 -11.59162 -11.49930 -11.23444 -10.77860 -10.33636 -10.11542 -9.92382 -8.85834 -8.60830 -6.28844 -0.40039 0.75602 1.00218 1.41840 1.50430 1.57363 1.70252 1.84063 2.06868 2.20868 2.68817 2.79696 3.36237 3.52607 3.68827 3.91849 3.94108 3.98588 4.09205 4.14012 4.27302 4.33503 4.43137 4.51101 4.53965 4.64617 4.70136 4.79149 4.86766 4.88832 4.92068 4.95076 5.12870 5.13893 5.17327 5.26911 5.38387 5.44708 5.52839 5.74804 5.85694 6.28766 6.38394 6.54738 6.72467 6.78244 6.80929 7.62675 8.26681 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014831 B = 0.003462 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.481064 B = 8085.339094 C = 8767.388410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 O -0.349 6.349 4 C 0.529 3.471 5 O -0.544 6.544 6 C -0.298 4.298 7 C 0.235 3.765 8 N -0.637 5.637 9 C 0.244 3.756 10 C -0.181 4.181 11 C -0.115 4.115 12 C 0.020 3.980 13 C -0.477 4.477 14 H 0.086 0.914 15 C 0.036 3.964 16 N -0.824 5.824 17 Si 0.985 3.015 18 H -0.265 1.265 19 H -0.266 1.266 20 H -0.256 1.256 21 C -0.006 4.006 22 N -0.511 5.511 23 C 0.090 3.910 24 H 0.099 0.901 25 C -0.139 4.139 26 O -0.353 6.353 27 C 0.111 3.889 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.413 0.587 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.291 0.709 37 H 0.143 0.857 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.117 0.883 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.446 3.366 8.260 14.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 O -0.266 6.266 4 C 0.379 3.621 5 O -0.437 6.437 6 C -0.306 4.306 7 C 0.129 3.871 8 N -0.265 5.265 9 C 0.015 3.985 10 C -0.203 4.203 11 C -0.142 4.142 12 C 0.015 3.985 13 C -0.507 4.507 14 H 0.104 0.896 15 C -0.180 4.180 16 N -0.449 5.449 17 Si 0.806 3.194 18 H -0.190 1.190 19 H -0.191 1.191 20 H -0.180 1.180 21 C -0.166 4.166 22 N -0.224 5.224 23 C 0.031 3.969 24 H 0.116 0.884 25 C -0.196 4.196 26 O -0.272 6.272 27 C 0.034 3.966 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.252 0.748 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.102 0.898 37 H 0.160 0.840 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.135 0.865 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.289 2.822 8.792 14.585 hybrid contribution 0.483 -0.399 -1.216 1.368 sum -10.806 2.423 7.576 13.418 Atomic orbital electron populations 1.21805 0.89691 1.04391 1.03924 1.22871 0.97516 0.79960 1.01870 1.86180 1.22850 1.33170 1.84401 1.18873 0.81011 0.89028 0.73209 1.90909 1.60883 1.43538 1.48405 1.20905 0.94407 0.94572 1.20707 1.20897 0.86355 0.92974 0.86915 1.40168 1.28166 1.35351 1.22810 1.17672 0.92429 0.99744 0.88700 1.21037 1.01837 1.02476 0.94998 1.21307 0.96359 0.99585 0.96920 1.18732 0.93969 0.91436 0.94341 1.19712 0.98056 1.39647 0.93295 0.89588 1.26781 0.97433 0.92040 1.01720 1.69842 1.16420 1.33845 1.24817 0.85135 0.78671 0.78804 0.76823 1.18997 1.19058 1.17983 1.22419 1.00158 1.01780 0.92206 1.66422 1.03809 1.23445 1.28714 1.22151 0.87442 0.87565 0.99755 0.88360 1.21756 0.95088 1.03510 0.99267 1.89135 1.17224 1.43179 1.77653 1.21813 0.91036 0.80632 1.03080 0.90662 0.91287 0.88320 0.92802 0.91736 0.74834 0.86170 0.85938 0.89778 0.84012 0.91950 0.89178 0.91224 0.86530 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 10.28 71.98 0.74 -1.30 16 2 C 0.05 1.19 6.10 71.98 0.44 1.63 16 3 O -0.35 -9.59 9.91 -58.90 -0.58 -10.17 16 4 C 0.53 17.61 7.71 68.58 0.53 18.14 16 5 O -0.54 -21.77 15.53 19.20 0.30 -21.47 16 6 C -0.30 -9.12 6.09 -19.59 -0.12 -9.24 16 7 C 0.23 7.69 4.91 41.30 0.20 7.89 16 8 N -0.64 -24.31 4.42 -179.30 -0.79 -25.10 16 9 C 0.24 10.98 7.59 133.23 1.01 11.99 16 10 C -0.18 -8.12 8.89 22.22 0.20 -7.92 16 11 C -0.12 -5.75 8.75 22.64 0.20 -5.55 16 12 C 0.02 1.04 5.58 -21.18 -0.12 0.92 16 13 C -0.48 -24.14 9.06 23.39 0.21 -23.92 16 14 H 0.09 4.13 7.90 -2.91 -0.02 4.11 16 15 C 0.04 1.69 5.17 85.24 0.44 2.13 16 16 N -0.82 -40.64 10.95 21.82 0.24 -40.41 16 17 Si 0.99 35.78 29.59 68.60 2.03 37.81 16 18 H -0.27 -9.40 7.11 99.48 0.71 -8.69 16 19 H -0.27 -9.22 7.11 99.48 0.71 -8.52 16 20 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 21 C -0.01 -0.31 10.97 85.38 0.94 0.62 16 22 N -0.51 -24.77 10.37 -191.08 -1.98 -26.75 16 23 C 0.09 2.53 3.47 30.01 0.10 2.64 16 24 H 0.10 2.79 6.33 -2.39 -0.02 2.78 16 25 C -0.14 -3.53 9.53 71.98 0.69 -2.85 16 26 O -0.35 -9.16 11.44 -148.98 -1.70 -10.86 16 27 C 0.11 2.63 7.40 71.40 0.53 3.15 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 1.35 8.13 -2.39 -0.02 1.33 16 32 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 33 H 0.41 15.76 8.62 -92.71 -0.80 14.97 16 34 H 0.12 4.76 5.22 -2.91 -0.02 4.75 16 35 H 0.12 6.23 6.23 -2.91 -0.02 6.21 16 36 H 0.29 12.96 8.30 -92.70 -0.77 12.19 16 37 H 0.14 6.53 8.06 -2.91 -0.02 6.50 16 38 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.09 1.92 8.14 -2.39 -0.02 1.91 16 40 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -61.32 357.09 3.76 -57.57 By element: Atomic # 1 Polarization: 40.79 SS G_CDS: 0.26 Total: 41.05 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 5.99 Total: -1.67 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -2.54 Total: -92.26 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -1.99 Total: -42.50 kcal Atomic # 14 Polarization: 35.78 SS G_CDS: 2.03 Total: 37.81 kcal Total: -61.32 3.76 -57.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168160304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.011 kcal (2) G-P(sol) polarization free energy of solvation -61.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds