Wall clock time and date at job start Tue Mar 31 2020 13:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42907 * 109.46990 * 2 1 4 4 C 1.34967 * 116.99889 * 180.02562 * 3 2 1 5 5 O 1.21702 * 119.99823 * 359.97438 * 4 3 2 6 6 C 1.41265 * 119.99672 * 179.97438 * 4 3 2 7 7 C 1.35419 * 126.14527 * 175.11234 * 6 4 3 8 8 N 1.36817 * 126.14413 * 359.93332 * 7 6 4 9 9 C 1.39077 * 119.99849 * 120.54971 * 8 7 6 10 10 C 1.39731 * 119.57606 * 353.40498 * 9 8 7 11 11 C 1.38640 * 119.48611 * 179.74993 * 10 9 8 12 12 C 1.38359 * 118.67585 * 0.51873 * 11 10 9 13 13 C 1.40579 * 119.14151 * 359.74813 * 12 11 10 14 14 C 1.41332 * 119.78795 * 179.97438 * 13 12 11 15 15 H 1.07992 * 119.99760 * 353.76313 * 14 13 12 16 16 C 1.40018 * 119.99695 * 173.76062 * 14 13 12 17 17 N 1.30747 * 120.00271 * 6.19680 * 16 14 13 18 18 Si 1.86806 * 119.99495 * 186.19537 * 16 14 13 19 19 H 1.48502 * 109.47070 * 94.98823 * 18 16 14 20 20 H 1.48498 * 109.47087 * 214.98279 * 18 16 14 21 21 H 1.48494 * 109.47148 * 334.98720 * 18 16 14 22 22 N 1.31944 * 119.57788 * 173.68418 * 9 8 7 23 23 C 1.51227 * 107.70355 * 179.97438 * 7 6 4 24 24 H 1.09008 * 110.16771 * 258.54737 * 23 7 6 25 25 C 1.52998 * 110.16517 * 136.83110 * 23 7 6 26 26 O 1.43936 * 105.88581 * 17.65290 * 23 7 6 27 27 C 1.44104 * 104.26441 * 331.69233 * 26 23 7 28 28 H 1.08997 * 109.46814 * 60.00441 * 1 2 3 29 29 H 1.09001 * 109.47450 * 300.00427 * 1 2 3 30 30 H 1.08997 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47346 * 119.99161 * 2 1 3 32 32 H 1.09001 * 109.47450 * 239.99573 * 2 1 3 33 33 H 0.96997 * 119.99703 * 300.54180 * 8 7 6 34 34 H 1.07995 * 120.25842 * 0.02562 * 10 9 8 35 35 H 1.08001 * 120.65938 * 180.26981 * 11 10 9 36 36 H 1.08002 * 120.42824 * 179.77322 * 12 11 10 37 37 H 0.96999 * 119.99435 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.47258 * 60.00386 * 25 23 7 39 39 H 1.09010 * 109.46851 * 179.97438 * 25 23 7 40 40 H 1.08992 * 109.47434 * 299.99705 * 25 23 7 41 41 H 1.09005 * 110.31879 * 269.29426 * 27 26 23 42 42 H 1.09001 * 110.10667 * 147.44882 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3444 1.5242 -0.0005 5 8 4.0857 0.5590 -0.0005 6 6 3.8842 2.8296 -0.0011 7 6 5.1964 3.1514 0.0915 8 7 6.2373 2.2706 0.2037 9 6 7.2423 2.2557 -0.7576 10 6 7.1119 3.0439 -1.9039 11 6 8.1173 3.0316 -2.8585 12 6 9.2215 2.2247 -2.6493 13 6 9.2915 1.4502 -1.4782 14 6 10.4130 0.6207 -1.2509 15 1 11.1636 0.5051 -2.0188 16 6 10.5509 -0.0512 -0.0302 17 7 9.5866 -0.0092 0.8517 18 14 12.1127 -1.0075 0.3382 19 1 13.0480 -0.1498 1.1094 20 1 11.7775 -2.2150 1.1348 21 1 12.7543 -1.4178 -0.9366 22 7 8.3040 1.4932 -0.5780 23 6 5.3042 4.6592 0.0496 24 1 5.6117 4.9866 -0.9436 25 6 6.3063 5.1457 1.0984 26 8 3.9876 5.1569 0.3506 27 6 3.1014 4.1188 -0.1115 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5137 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 6.2743 1.6566 0.9537 34 1 6.2369 3.6613 -2.0432 35 1 8.0381 3.6367 -3.7495 36 1 10.0196 2.1905 -3.3762 37 1 9.6824 -0.4744 1.6974 38 1 7.2852 4.7119 0.8944 39 1 6.3754 6.2328 1.0581 40 1 5.9724 4.8390 2.0896 41 1 2.8167 4.2979 -1.1484 42 1 2.2141 4.0748 0.5201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168162118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:45 Heat of formation + Delta-G solvation = -81.648316 kcal Electronic energy + Delta-G solvation = -26857.675510 eV Core-core repulsion = 22995.956248 eV Total energy + Delta-G solvation = -3861.719262 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.23860 -40.99038 -40.06683 -37.93536 -37.06332 -35.30915 -33.51911 -32.83251 -32.27538 -32.06224 -30.58868 -27.50493 -26.73582 -25.98405 -23.90660 -23.47617 -23.31474 -22.08369 -20.78711 -19.42640 -18.86467 -18.36811 -18.00057 -17.76520 -17.20032 -17.00727 -16.58291 -16.24222 -15.68521 -15.53768 -15.16957 -15.05251 -14.76598 -14.61191 -14.36500 -13.91638 -13.80657 -13.56869 -13.19647 -13.03372 -12.97984 -12.88888 -12.79559 -12.73685 -12.64065 -12.47814 -12.35090 -12.16492 -11.81536 -11.59592 -11.51297 -11.29882 -10.83465 -10.14302 -9.85449 -9.60314 -8.62907 -8.33127 -6.55806 -0.41722 0.93210 1.21194 1.39547 1.52430 1.53936 1.72327 1.78124 2.06170 2.21088 2.76997 2.83436 3.36898 3.51484 3.89060 3.95204 3.97365 4.02624 4.08595 4.23893 4.30753 4.37851 4.44519 4.52060 4.62022 4.63890 4.79478 4.83739 4.87813 4.90463 4.91718 4.94220 5.03512 5.12803 5.13300 5.24444 5.41444 5.50325 5.59066 5.83652 5.92527 6.08664 6.36215 6.50312 6.70987 6.77497 6.97746 8.15312 8.41489 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013134 B = 0.004000 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.337923 B = 6997.739871 C = 8112.779423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.051 3.949 3 O -0.347 6.347 4 C 0.527 3.473 5 O -0.542 6.542 6 C -0.292 4.292 7 C 0.235 3.765 8 N -0.646 5.646 9 C 0.386 3.614 10 C -0.353 4.353 11 C -0.027 4.027 12 C -0.321 4.321 13 C 0.255 3.745 14 C -0.464 4.464 15 H 0.093 0.907 16 C 0.025 3.975 17 N -0.752 5.752 18 Si 0.987 3.013 19 H -0.263 1.263 20 H -0.272 1.272 21 H -0.253 1.253 22 N -0.552 5.552 23 C 0.095 3.905 24 H 0.108 0.892 25 C -0.139 4.139 26 O -0.353 6.353 27 C 0.112 3.888 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.409 0.591 34 H 0.119 0.881 35 H 0.139 0.861 36 H 0.112 0.888 37 H 0.277 0.723 38 H 0.056 0.944 39 H 0.093 0.907 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.798 5.896 0.505 15.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 O -0.263 6.263 4 C 0.376 3.624 5 O -0.435 6.435 6 C -0.299 4.299 7 C 0.130 3.870 8 N -0.273 5.273 9 C 0.149 3.851 10 C -0.378 4.378 11 C -0.051 4.051 12 C -0.344 4.344 13 C 0.129 3.871 14 C -0.496 4.496 15 H 0.111 0.889 16 C -0.197 4.197 17 N -0.374 5.374 18 Si 0.807 3.193 19 H -0.187 1.187 20 H -0.197 1.197 21 H -0.176 1.176 22 N -0.272 5.272 23 C 0.036 3.964 24 H 0.126 0.874 25 C -0.197 4.197 26 O -0.272 6.272 27 C 0.035 3.965 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.248 0.752 34 H 0.137 0.863 35 H 0.157 0.843 36 H 0.130 0.870 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.082 0.918 41 H 0.116 0.884 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.657 5.295 1.452 14.719 hybrid contribution 0.787 -0.972 -0.209 1.268 sum -12.870 4.323 1.243 13.634 Atomic orbital electron populations 1.21799 0.89444 1.04397 1.04027 1.22881 0.97643 0.79974 1.01792 1.86178 1.22691 1.33114 1.84358 1.18938 0.81055 0.89096 0.73266 1.90980 1.60960 1.43677 1.47847 1.20988 0.95896 0.94749 1.18282 1.21028 0.86534 0.93073 0.86349 1.40753 1.21234 1.38465 1.26875 1.18662 0.87872 0.91721 0.86809 1.20985 1.04569 1.13332 0.98924 1.21051 0.91821 0.95075 0.97127 1.21819 1.02445 1.08048 1.02087 1.18679 0.90484 0.90605 0.87327 1.20008 1.05197 1.23234 1.01134 0.88902 1.26997 1.00784 0.96495 0.95382 1.70238 1.31642 1.29945 1.05591 0.85124 0.77108 0.77602 0.79440 1.18735 1.19665 1.17650 1.68016 1.01714 1.24435 1.33022 1.22105 0.85978 0.86786 1.01569 0.87444 1.21745 0.96841 1.03302 0.97776 1.89170 1.14761 1.39787 1.83454 1.21880 0.92632 0.79749 1.02228 0.90872 0.90813 0.88385 0.92295 0.92552 0.75238 0.86305 0.84293 0.86972 0.91259 0.92521 0.88796 0.91762 0.88430 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 10.28 71.98 0.74 -1.30 16 2 C 0.05 1.21 6.10 71.98 0.44 1.65 16 3 O -0.35 -9.68 9.91 -58.85 -0.58 -10.26 16 4 C 0.53 18.28 7.71 68.56 0.53 18.81 16 5 O -0.54 -23.43 15.64 19.17 0.30 -23.13 16 6 C -0.29 -9.21 6.09 -19.60 -0.12 -9.33 16 7 C 0.23 8.11 4.89 41.30 0.20 8.31 16 8 N -0.65 -27.53 4.36 -179.37 -0.78 -28.31 16 9 C 0.39 18.84 7.60 133.32 1.01 19.85 16 10 C -0.35 -15.33 9.00 22.73 0.20 -15.13 16 11 C -0.03 -1.14 10.15 22.39 0.23 -0.91 16 12 C -0.32 -15.65 9.83 22.87 0.22 -15.42 16 13 C 0.26 14.22 6.54 40.19 0.26 14.48 16 14 C -0.46 -25.26 9.13 23.46 0.21 -25.04 16 15 H 0.09 4.70 7.85 -2.91 -0.02 4.67 16 16 C 0.03 1.31 5.49 85.29 0.47 1.78 16 17 N -0.75 -41.08 11.49 21.84 0.25 -40.83 16 18 Si 0.99 38.45 29.56 68.60 2.03 40.48 16 19 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 20 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 22 N -0.55 -30.96 7.92 -186.43 -1.48 -32.43 16 23 C 0.10 2.72 3.50 30.01 0.10 2.82 16 24 H 0.11 2.95 6.41 -2.38 -0.02 2.94 16 25 C -0.14 -3.84 9.53 71.98 0.69 -3.15 16 26 O -0.35 -9.15 11.46 -148.98 -1.71 -10.86 16 27 C 0.11 2.61 7.40 71.40 0.53 3.14 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 32 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 33 H 0.41 18.59 8.79 -92.71 -0.81 17.78 16 34 H 0.12 4.45 5.35 -2.91 -0.02 4.43 16 35 H 0.14 4.72 8.06 -2.91 -0.02 4.70 16 36 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 37 H 0.28 13.77 8.29 -92.71 -0.77 13.00 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 42 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -68.13 359.09 4.00 -64.13 By element: Atomic # 1 Polarization: 40.42 SS G_CDS: 0.24 Total: 40.66 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 5.72 Total: 0.56 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -2.01 Total: -101.58 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -1.99 Total: -44.25 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Total: -68.13 4.00 -64.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168162118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.520 kcal (2) G-P(sol) polarization free energy of solvation -68.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds