Wall clock time and date at job start Tue Mar 31 2020 13:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.47123 * 2 1 4 4 C 1.35109 * 116.99568 * 179.97438 * 3 2 1 5 5 O 1.21829 * 120.00248 * 0.02562 * 4 3 2 6 6 C 1.40344 * 119.99680 * 179.97438 * 4 3 2 7 7 C 1.38642 * 126.40565 * 176.61212 * 6 4 3 8 8 N 1.32734 * 126.40790 * 0.02562 * 7 6 4 9 9 C 1.34304 * 119.99923 * 68.54993 * 8 7 6 10 10 C 1.41733 * 120.52097 * 5.27128 * 9 8 7 11 11 C 1.34872 * 120.02523 * 179.73585 * 10 9 8 12 12 N 1.36039 * 121.16581 * 0.57787 * 11 10 9 13 13 H 0.96999 * 119.46271 * 179.70316 * 12 11 10 14 14 C 1.37633 * 121.07587 * 359.68361 * 12 11 10 15 15 C 1.40051 * 120.05754 * 180.02562 * 14 12 11 16 16 H 1.07998 * 119.99839 * 207.24271 * 15 14 12 17 17 C 1.40443 * 120.00060 * 27.23222 * 15 14 12 18 18 N 1.30524 * 119.99959 * 9.07845 * 17 15 14 19 19 Si 1.86796 * 120.00174 * 189.07864 * 17 15 14 20 20 H 1.48500 * 109.47101 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47639 * 120.00089 * 19 17 15 22 22 H 1.48507 * 109.46938 * 240.00160 * 19 17 15 23 23 C 1.39633 * 119.88884 * 0.02562 * 14 12 11 24 24 C 1.51287 * 107.18515 * 179.97438 * 7 6 4 25 25 H 1.08997 * 110.20784 * 137.05121 * 24 7 6 26 26 C 1.53001 * 110.14395 * 258.75101 * 24 7 6 27 27 O 1.43862 * 105.99558 * 17.88291 * 24 7 6 28 28 C 1.43857 * 104.85334 * 331.24519 * 27 24 7 29 29 H 1.08999 * 109.46871 * 300.00170 * 1 2 3 30 30 H 1.09004 * 109.46861 * 59.99441 * 1 2 3 31 31 H 1.08992 * 109.47024 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46871 * 239.99830 * 2 1 3 33 33 H 1.09004 * 109.46960 * 120.00014 * 2 1 3 34 34 H 1.08002 * 119.98444 * 0.03176 * 10 9 8 35 35 H 1.07994 * 119.41731 * 180.30130 * 11 10 9 36 36 H 0.97001 * 120.00383 * 179.97438 * 18 17 15 37 37 H 1.08003 * 120.55646 * 180.02562 * 23 14 12 38 38 H 1.09008 * 109.46893 * 178.02142 * 26 24 7 39 39 H 1.08996 * 109.47747 * 298.01868 * 26 24 7 40 40 H 1.09002 * 109.47436 * 58.02704 * 26 24 7 41 41 H 1.09008 * 110.15014 * 147.88957 * 28 27 24 42 42 H 1.08997 * 110.14845 * 269.62125 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3459 1.5242 0.0005 5 8 4.0880 0.5580 0.0005 6 6 3.8823 2.8211 0.0000 7 6 5.2261 3.1557 0.0664 8 7 6.2459 2.3095 0.1419 9 6 6.5501 1.5292 -0.9081 10 6 5.8624 1.6777 -2.1384 11 6 6.1796 0.8923 -3.1880 12 7 7.1479 -0.0581 -3.0888 13 1 7.3531 -0.6122 -3.8581 14 6 7.8413 -0.2460 -1.9149 15 6 8.8344 -1.2304 -1.8367 16 1 9.0673 -1.6881 -0.8866 17 6 9.5271 -1.6226 -2.9937 18 7 9.3755 -0.9528 -4.1037 19 14 10.6655 -3.1027 -2.9442 20 1 10.6629 -3.6837 -1.5776 21 1 10.1954 -4.1218 -3.9167 22 1 12.0440 -2.6791 -3.2988 23 6 7.5531 0.5466 -0.8020 24 6 5.3128 4.6658 0.0355 25 1 6.0422 5.0161 0.7657 26 6 5.7000 5.1428 -1.3658 27 8 4.0001 5.1453 0.3770 28 6 3.1025 4.1154 -0.0736 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.0872 2.4233 -2.2369 35 1 5.6526 1.0172 -4.1223 36 1 9.8542 -1.2234 -4.9028 37 1 8.0909 0.4086 0.1244 38 1 5.7250 6.2324 -1.3847 39 1 6.6845 4.7523 -1.6234 40 1 4.9664 4.7836 -2.0875 41 1 2.2303 4.0658 0.5783 42 1 2.7936 4.3096 -1.1007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168168086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:07 Heat of formation + Delta-G solvation = -78.250451 kcal Electronic energy + Delta-G solvation = -27090.719456 eV Core-core repulsion = 23229.147536 eV Total energy + Delta-G solvation = -3861.571920 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.15267 -39.17543 -38.82640 -36.05292 -35.20150 -34.04864 -31.66188 -31.35330 -30.84394 -30.52776 -28.92811 -26.60582 -25.06354 -24.16301 -22.29299 -22.05887 -21.86108 -20.29260 -18.98081 -18.06789 -17.01759 -16.85379 -16.26676 -16.07455 -15.67542 -15.40129 -14.95990 -14.76075 -14.10747 -13.84346 -13.53909 -13.37487 -13.27684 -13.14497 -12.98784 -12.49342 -12.35997 -12.21101 -11.96603 -11.77204 -11.61829 -11.54113 -11.48132 -11.33711 -11.25868 -11.08342 -10.90077 -10.59822 -10.06911 -9.95374 -9.87195 -9.80358 -9.29293 -9.03989 -8.49335 -7.61294 -7.17480 -6.34293 -5.24230 1.70030 2.28896 2.42205 2.72355 2.79844 2.87477 3.43540 3.61015 3.88437 3.99782 4.26281 4.49871 4.84989 5.17614 5.18424 5.27942 5.36687 5.47147 5.52566 5.54888 5.61353 5.75506 5.91841 5.98588 6.01968 6.10177 6.10974 6.12399 6.22743 6.35199 6.36499 6.40303 6.46790 6.51290 6.78859 6.84868 7.02005 7.28534 7.39516 7.41915 7.49325 7.58156 7.84803 7.94418 8.33091 8.49273 8.90707 9.38412 9.47244 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.004036 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.389767 B = 6936.474914 C = 8214.010155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.066 3.934 3 O -0.370 6.370 4 C 0.530 3.470 5 O -0.522 6.522 6 C -0.418 4.418 7 C 0.289 3.711 8 N -0.663 5.663 9 C 0.349 3.651 10 C -0.271 4.271 11 C 0.130 3.870 12 N -0.576 5.576 13 H 0.421 0.579 14 C 0.335 3.665 15 C -0.452 4.452 16 H 0.111 0.889 17 C 0.075 3.925 18 N -0.809 5.809 19 Si 0.934 3.066 20 H -0.253 1.253 21 H -0.267 1.267 22 H -0.267 1.267 23 C -0.319 4.319 24 C 0.082 3.918 25 H 0.103 0.897 26 C -0.155 4.155 27 O -0.368 6.368 28 C 0.122 3.878 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.122 0.878 35 H 0.142 0.858 36 H 0.298 0.702 37 H 0.124 0.876 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.977 0.771 -3.641 7.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.009 4.009 3 O -0.289 6.289 4 C 0.383 3.617 5 O -0.414 6.414 6 C -0.428 4.428 7 C 0.166 3.834 8 N -0.387 5.387 9 C 0.216 3.784 10 C -0.299 4.299 11 C -0.002 4.002 12 N -0.183 5.183 13 H 0.262 0.738 14 C 0.223 3.777 15 C -0.484 4.484 16 H 0.129 0.871 17 C -0.145 4.145 18 N -0.437 5.437 19 Si 0.756 3.244 20 H -0.176 1.176 21 H -0.191 1.191 22 H -0.192 1.192 23 C -0.346 4.346 24 C 0.022 3.978 25 H 0.120 0.880 26 C -0.213 4.213 27 O -0.286 6.286 28 C 0.045 3.955 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.140 0.860 35 H 0.159 0.841 36 H 0.110 0.890 37 H 0.142 0.858 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.389 0.760 -3.023 6.225 hybrid contribution -0.021 -0.980 -0.926 1.348 sum -5.409 -0.219 -3.948 6.701 Atomic orbital electron populations 1.21771 0.93636 1.02157 1.02963 1.22324 0.94372 0.82525 1.01700 1.86207 1.26095 1.30283 1.86354 1.18326 0.79311 0.89467 0.74617 1.90935 1.59268 1.42318 1.48859 1.20664 0.95571 0.92145 1.34372 1.21765 0.90095 0.92892 0.78683 1.66278 1.28055 1.21311 1.23088 1.18157 0.87830 0.86050 0.86399 1.21293 1.06829 1.06877 0.94949 1.21482 0.90091 0.89813 0.98825 1.42268 1.29579 1.30904 1.15588 0.73773 1.17935 0.87396 0.89840 0.82501 1.19702 1.14574 1.17322 0.96837 0.87122 1.26298 0.96761 0.97344 0.94058 1.69158 1.36957 1.35228 1.02313 0.85792 0.78939 0.79149 0.80501 1.17583 1.19149 1.19156 1.20509 1.10015 1.04126 0.99943 1.22060 0.86515 0.91743 0.97431 0.87951 1.22037 1.02254 1.01375 0.95596 1.88966 1.16004 1.41776 1.81855 1.21312 0.92246 0.83928 0.98029 0.91897 0.91906 0.91025 0.92396 0.92437 0.86046 0.84064 0.88982 0.85830 0.91577 0.91152 0.92263 0.90630 0.93393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 37.16 0.38 -1.33 16 2 C 0.07 1.05 6.10 37.16 0.23 1.28 16 3 O -0.37 -7.12 9.91 -41.62 -0.41 -7.53 16 4 C 0.53 11.85 7.45 31.52 0.23 12.08 16 5 O -0.52 -13.19 13.97 -19.52 -0.27 -13.47 16 6 C -0.42 -8.96 5.20 -103.39 -0.54 -9.50 16 7 C 0.29 6.36 4.63 -81.77 -0.38 5.98 16 8 N -0.66 -16.18 10.03 -6.69 -0.07 -16.25 16 9 C 0.35 8.30 5.08 -84.48 -0.43 7.87 16 10 C -0.27 -5.67 8.18 -39.44 -0.32 -5.99 16 11 C 0.13 2.40 11.15 -16.88 -0.19 2.21 16 12 N -0.58 -11.50 4.86 -10.74 -0.05 -11.56 16 13 H 0.42 7.89 6.46 -40.82 -0.26 7.62 16 14 C 0.33 7.53 6.34 -84.06 -0.53 7.00 16 15 C -0.45 -9.74 9.07 -38.07 -0.35 -10.09 16 16 H 0.11 2.33 7.87 -52.49 -0.41 1.92 16 17 C 0.08 1.47 5.30 -17.28 -0.09 1.38 16 18 N -0.81 -15.78 11.01 55.57 0.61 -15.17 16 19 Si 0.93 14.92 29.57 -169.99 -5.03 9.90 16 20 H -0.25 -4.12 7.11 56.52 0.40 -3.71 16 21 H -0.27 -4.18 7.11 56.52 0.40 -3.78 16 22 H -0.27 -4.29 7.11 56.52 0.40 -3.89 16 23 C -0.32 -7.68 9.81 -38.09 -0.37 -8.05 16 24 C 0.08 1.53 4.08 -27.59 -0.11 1.42 16 25 H 0.10 1.85 8.14 -51.93 -0.42 1.42 16 26 C -0.15 -2.44 9.52 37.16 0.35 -2.09 16 27 O -0.37 -6.90 11.41 -35.23 -0.40 -7.31 16 28 C 0.12 2.23 7.16 36.29 0.26 2.49 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 33 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 34 H 0.12 2.45 6.38 -52.49 -0.33 2.12 16 35 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 36 H 0.30 5.20 8.29 -40.82 -0.34 4.86 16 37 H 0.12 3.02 8.06 -52.48 -0.42 2.60 16 38 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 0.92 7.89 -51.93 -0.41 0.51 16 41 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 355.82 15.07 5.36 5.36 Total: -1.00 -28.12 355.82 -7.74 -35.86 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -5.63 Total: 15.52 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -1.85 Total: 4.65 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.49 Total: -42.98 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -1.09 Total: -28.31 kcal Atomic # 14 Polarization: 14.92 SS G_CDS: -5.03 Total: 9.90 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.12 -7.74 -35.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168168086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.393 kcal (2) G-P(sol) polarization free energy of solvation -28.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds