Wall clock time and date at job start Tue Mar 31 2020 13:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.47123 * 2 1 4 4 C 1.35109 * 116.99568 * 179.97438 * 3 2 1 5 5 O 1.21829 * 120.00248 * 0.02562 * 4 3 2 6 6 C 1.40344 * 119.99680 * 179.97438 * 4 3 2 7 7 C 1.38642 * 126.40565 * 176.61212 * 6 4 3 8 8 N 1.32734 * 126.40790 * 0.02562 * 7 6 4 9 9 C 1.34304 * 119.99923 * 68.54993 * 8 7 6 10 10 C 1.41733 * 120.52097 * 5.27128 * 9 8 7 11 11 C 1.34872 * 120.02523 * 179.73585 * 10 9 8 12 12 N 1.36039 * 121.16581 * 0.57787 * 11 10 9 13 13 H 0.96999 * 119.46271 * 179.70316 * 12 11 10 14 14 C 1.37633 * 121.07587 * 359.68361 * 12 11 10 15 15 C 1.40051 * 120.05754 * 180.02562 * 14 12 11 16 16 H 1.07998 * 119.99839 * 207.24271 * 15 14 12 17 17 C 1.40443 * 120.00060 * 27.23222 * 15 14 12 18 18 N 1.30524 * 119.99959 * 9.07845 * 17 15 14 19 19 Si 1.86796 * 120.00174 * 189.07864 * 17 15 14 20 20 H 1.48500 * 109.47101 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47639 * 120.00089 * 19 17 15 22 22 H 1.48507 * 109.46938 * 240.00160 * 19 17 15 23 23 C 1.39633 * 119.88884 * 0.02562 * 14 12 11 24 24 C 1.51287 * 107.18515 * 179.97438 * 7 6 4 25 25 H 1.08997 * 110.20784 * 137.05121 * 24 7 6 26 26 C 1.53001 * 110.14395 * 258.75101 * 24 7 6 27 27 O 1.43862 * 105.99558 * 17.88291 * 24 7 6 28 28 C 1.43857 * 104.85334 * 331.24519 * 27 24 7 29 29 H 1.08999 * 109.46871 * 300.00170 * 1 2 3 30 30 H 1.09004 * 109.46861 * 59.99441 * 1 2 3 31 31 H 1.08992 * 109.47024 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46871 * 239.99830 * 2 1 3 33 33 H 1.09004 * 109.46960 * 120.00014 * 2 1 3 34 34 H 1.08002 * 119.98444 * 0.03176 * 10 9 8 35 35 H 1.07994 * 119.41731 * 180.30130 * 11 10 9 36 36 H 0.97001 * 120.00383 * 179.97438 * 18 17 15 37 37 H 1.08003 * 120.55646 * 180.02562 * 23 14 12 38 38 H 1.09008 * 109.46893 * 178.02142 * 26 24 7 39 39 H 1.08996 * 109.47747 * 298.01868 * 26 24 7 40 40 H 1.09002 * 109.47436 * 58.02704 * 26 24 7 41 41 H 1.09008 * 110.15014 * 147.88957 * 28 27 24 42 42 H 1.08997 * 110.14845 * 269.62125 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3459 1.5242 0.0005 5 8 4.0880 0.5580 0.0005 6 6 3.8823 2.8211 0.0000 7 6 5.2261 3.1557 0.0664 8 7 6.2459 2.3095 0.1419 9 6 6.5501 1.5292 -0.9081 10 6 5.8624 1.6777 -2.1384 11 6 6.1796 0.8923 -3.1880 12 7 7.1479 -0.0581 -3.0888 13 1 7.3531 -0.6122 -3.8581 14 6 7.8413 -0.2460 -1.9149 15 6 8.8344 -1.2304 -1.8367 16 1 9.0673 -1.6881 -0.8866 17 6 9.5271 -1.6226 -2.9937 18 7 9.3755 -0.9528 -4.1037 19 14 10.6655 -3.1027 -2.9442 20 1 10.6629 -3.6837 -1.5776 21 1 10.1954 -4.1218 -3.9167 22 1 12.0440 -2.6791 -3.2988 23 6 7.5531 0.5466 -0.8020 24 6 5.3128 4.6658 0.0355 25 1 6.0422 5.0161 0.7657 26 6 5.7000 5.1428 -1.3658 27 8 4.0001 5.1453 0.3770 28 6 3.1025 4.1154 -0.0736 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.0872 2.4233 -2.2369 35 1 5.6526 1.0172 -4.1223 36 1 9.8542 -1.2234 -4.9028 37 1 8.0909 0.4086 0.1244 38 1 5.7250 6.2324 -1.3847 39 1 6.6845 4.7523 -1.6234 40 1 4.9664 4.7836 -2.0875 41 1 2.2303 4.0658 0.5783 42 1 2.7936 4.3096 -1.1007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168168086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:06 Heat of formation + Delta-G solvation = -94.864170 kcal Electronic energy + Delta-G solvation = -27091.439881 eV Core-core repulsion = 23229.147536 eV Total energy + Delta-G solvation = -3862.292345 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.74625 -40.79276 -40.36597 -37.66857 -36.86072 -35.64325 -33.16486 -32.78001 -32.42581 -31.86309 -30.51854 -28.22427 -26.55660 -25.63316 -23.73666 -23.60462 -23.38603 -21.81628 -20.57546 -19.66832 -18.64689 -18.43659 -17.87976 -17.58382 -17.14361 -16.90728 -16.44417 -16.31927 -15.63509 -15.34443 -15.05929 -14.85541 -14.70813 -14.60744 -14.43633 -13.80057 -13.64370 -13.54673 -13.42037 -13.25967 -13.03629 -12.99023 -12.84165 -12.81230 -12.74750 -12.49316 -12.33368 -11.99057 -11.58455 -11.49595 -11.40731 -11.34941 -11.00618 -10.58191 -10.12423 -9.14591 -8.84518 -8.02424 -6.95300 0.04430 0.70960 0.84499 1.39572 1.50803 1.55300 2.10291 2.13543 2.26682 2.38727 2.67500 3.02943 3.21629 3.60251 3.98849 4.01709 4.03869 4.14410 4.15437 4.20933 4.36945 4.47361 4.53779 4.60882 4.68754 4.69280 4.74791 4.80455 4.82049 4.93171 4.93581 4.97516 5.13879 5.14603 5.23312 5.33141 5.40390 5.68133 5.75962 5.80754 5.86162 5.86945 6.16798 6.31973 6.66457 6.90615 7.23923 7.78555 7.87833 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.004036 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.389767 B = 6936.474914 C = 8214.010155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.057 3.943 3 O -0.366 6.366 4 C 0.525 3.475 5 O -0.562 6.562 6 C -0.433 4.433 7 C 0.274 3.726 8 N -0.700 5.700 9 C 0.339 3.661 10 C -0.292 4.292 11 C 0.148 3.852 12 N -0.573 5.573 13 H 0.427 0.573 14 C 0.324 3.676 15 C -0.473 4.473 16 H 0.103 0.897 17 C 0.052 3.948 18 N -0.813 5.813 19 Si 1.000 3.000 20 H -0.262 1.262 21 H -0.253 1.253 22 H -0.262 1.262 23 C -0.363 4.363 24 C 0.084 3.916 25 H 0.104 0.896 26 C -0.145 4.145 27 O -0.370 6.370 28 C 0.128 3.872 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.127 0.873 35 H 0.195 0.805 36 H 0.313 0.687 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.856 0.660 -5.994 9.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.018 4.018 3 O -0.284 6.284 4 C 0.380 3.620 5 O -0.457 6.457 6 C -0.442 4.442 7 C 0.151 3.849 8 N -0.426 5.426 9 C 0.206 3.794 10 C -0.320 4.320 11 C 0.017 3.983 12 N -0.181 5.181 13 H 0.270 0.730 14 C 0.212 3.788 15 C -0.505 4.505 16 H 0.121 0.879 17 C -0.168 4.168 18 N -0.440 5.440 19 Si 0.820 3.180 20 H -0.186 1.186 21 H -0.177 1.177 22 H -0.187 1.187 23 C -0.390 4.390 24 C 0.025 3.975 25 H 0.121 0.879 26 C -0.202 4.202 27 O -0.288 6.288 28 C 0.052 3.948 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.117 0.883 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.145 0.855 35 H 0.212 0.788 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.307 0.681 -5.392 8.325 hybrid contribution 0.273 -1.012 -0.225 1.072 sum -6.034 -0.331 -5.617 8.251 Atomic orbital electron populations 1.21771 0.89710 1.04188 1.03691 1.22666 0.97350 0.80924 1.00874 1.86197 1.24318 1.32153 1.85772 1.18597 0.80056 0.89459 0.73910 1.90914 1.60384 1.43583 1.50809 1.21006 0.96041 0.93116 1.34078 1.22196 0.89942 0.94371 0.78427 1.66244 1.29350 1.22569 1.24391 1.18348 0.87844 0.85682 0.87532 1.21263 1.07603 1.08457 0.94649 1.22168 0.88573 0.87559 1.00039 1.42263 1.29588 1.31349 1.14898 0.73004 1.17989 0.88022 0.89783 0.82999 1.19903 1.15209 1.17578 0.97773 0.87863 1.26959 0.97500 0.99283 0.93100 1.69121 1.36640 1.35384 1.02810 0.84826 0.77072 0.75999 0.80144 1.18566 1.17700 1.18672 1.20457 1.11941 1.06505 1.00126 1.22116 0.86606 0.89564 0.99240 0.87872 1.21972 1.01703 1.02954 0.93588 1.88951 1.16003 1.41624 1.82242 1.21363 0.91837 0.82123 0.99510 0.91335 0.90951 0.88333 0.93017 0.93638 0.85488 0.78801 0.87433 0.88377 0.88845 0.92032 0.91828 0.89616 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 10.28 71.98 0.74 -2.13 16 2 C 0.06 1.79 6.10 71.98 0.44 2.23 16 3 O -0.37 -14.01 9.91 -60.34 -0.60 -14.61 16 4 C 0.53 23.94 7.45 68.33 0.51 24.45 16 5 O -0.56 -29.58 13.97 18.75 0.26 -29.32 16 6 C -0.43 -18.69 5.20 -19.07 -0.10 -18.79 16 7 C 0.27 12.30 4.63 42.71 0.20 12.49 16 8 N -0.70 -35.91 10.03 -175.08 -1.76 -37.67 16 9 C 0.34 16.88 5.08 40.26 0.20 17.09 16 10 C -0.29 -12.30 8.18 22.36 0.18 -12.12 16 11 C 0.15 5.31 11.15 83.27 0.93 6.24 16 12 N -0.57 -22.66 4.86 -187.89 -0.91 -23.57 16 13 H 0.43 15.44 6.46 -92.71 -0.60 14.84 16 14 C 0.32 15.06 6.34 39.01 0.25 15.31 16 15 C -0.47 -20.90 9.07 23.25 0.21 -20.69 16 16 H 0.10 4.58 7.87 -2.91 -0.02 4.55 16 17 C 0.05 1.96 5.30 85.42 0.45 2.41 16 18 N -0.81 -30.31 11.01 21.91 0.24 -30.07 16 19 Si 1.00 29.28 29.57 68.60 2.03 31.31 16 20 H -0.26 -8.03 7.11 99.48 0.71 -7.32 16 21 H -0.25 -6.88 7.11 99.48 0.71 -6.17 16 22 H -0.26 -7.51 7.11 99.48 0.71 -6.80 16 23 C -0.36 -18.69 9.81 23.24 0.23 -18.47 16 24 C 0.08 3.12 4.08 30.03 0.12 3.24 16 25 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 26 C -0.14 -4.37 9.52 71.98 0.69 -3.68 16 27 O -0.37 -13.38 11.41 -148.98 -1.70 -15.08 16 28 C 0.13 4.52 7.16 71.42 0.51 5.03 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 33 H 0.05 1.53 8.13 -2.39 -0.02 1.51 16 34 H 0.13 5.11 6.38 -2.91 -0.02 5.09 16 35 H 0.20 4.75 8.06 -2.91 -0.02 4.72 16 36 H 0.31 10.10 8.29 -92.71 -0.77 9.33 16 37 H 0.10 5.32 8.06 -2.91 -0.02 5.30 16 38 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 39 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.06 1.85 7.89 -2.39 -0.02 1.83 16 41 H 0.09 2.83 8.14 -2.38 -0.02 2.81 16 42 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -64.24 355.82 3.58 -60.67 By element: Atomic # 1 Polarization: 45.28 SS G_CDS: 0.45 Total: 45.73 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 5.56 Total: 12.61 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -2.43 Total: -91.31 kcal Atomic # 8 Polarization: -56.97 SS G_CDS: -2.04 Total: -59.01 kcal Atomic # 14 Polarization: 29.28 SS G_CDS: 2.03 Total: 31.31 kcal Total: -64.24 3.58 -60.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168168086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.198 kcal (2) G-P(sol) polarization free energy of solvation -64.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds