Wall clock time and date at job start Tue Mar 31 2020 13:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50705 * 119.99880 * 2 1 4 4 H 1.08993 * 115.55267 * 334.33125 * 3 2 1 5 5 C 1.53073 * 117.52882 * 188.61091 * 3 2 1 6 6 C 1.52998 * 59.98685 * 252.53344 * 5 3 2 7 7 N 1.46499 * 117.49841 * 107.50338 * 6 5 3 8 8 C 1.39122 * 120.00059 * 78.56038 * 7 6 5 9 9 C 1.39171 * 119.62746 * 1.22112 * 8 7 6 10 10 C 1.38217 * 119.16587 * 180.02562 * 9 8 7 11 11 C 1.39442 * 118.45199 * 0.02562 * 10 9 8 12 12 O 1.35809 * 120.40657 * 179.97438 * 11 10 9 13 13 C 1.34811 * 117.00140 * 3.47815 * 12 11 10 14 14 H 1.08002 * 119.99539 * 2.80514 * 13 12 11 15 15 C 1.38623 * 120.00450 * 182.80800 * 13 12 11 16 16 N 1.31583 * 120.00115 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00257 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47507 * 89.99293 * 17 15 13 19 19 H 1.48506 * 109.47273 * 209.99902 * 17 15 13 20 20 H 1.48501 * 109.46887 * 329.99521 * 17 15 13 21 21 C 1.38674 * 119.19148 * 359.97438 * 11 10 9 22 22 N 1.31934 * 120.75709 * 359.97438 * 21 11 10 23 23 C 1.50703 * 117.49987 * 252.50591 * 6 5 3 24 24 O 1.20822 * 120.00288 * 67.92630 * 23 6 5 25 25 O 1.34229 * 119.99816 * 247.92846 * 23 6 5 26 26 C 1.45197 * 117.00247 * 180.02562 * 25 23 6 27 27 C 1.52999 * 109.47370 * 180.02562 * 26 25 23 28 28 H 1.08000 * 119.99654 * 179.97438 * 1 2 3 29 29 H 1.08004 * 120.00039 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.00039 * 179.97438 * 2 1 3 31 31 H 1.09010 * 117.49223 * 145.04682 * 5 3 2 32 32 H 1.08998 * 117.51714 * 0.02562 * 5 3 2 33 33 H 0.97000 * 119.99820 * 258.55968 * 7 6 5 34 34 H 1.07999 * 120.41978 * 0.05081 * 9 8 7 35 35 H 1.08006 * 120.76952 * 180.02562 * 10 9 8 36 36 H 0.96995 * 119.99962 * 179.97438 * 16 15 13 37 37 H 1.08004 * 119.61843 * 180.02562 * 21 11 10 38 38 H 1.09005 * 109.47058 * 299.99790 * 26 25 23 39 39 H 1.09000 * 109.47224 * 59.99736 * 26 25 23 40 40 H 1.08999 * 109.47481 * 180.02562 * 27 26 25 41 41 H 1.09005 * 109.46659 * 299.99790 * 27 26 25 42 42 H 1.09000 * 109.47363 * 59.99576 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.5310 2.1554 -0.4259 5 6 3.5795 1.2468 -0.2032 6 6 3.0044 1.5776 1.1754 7 7 3.1042 0.5497 2.2144 8 6 4.3072 0.3527 2.8848 9 6 5.4038 1.1537 2.5801 10 6 6.5945 0.9494 3.2515 11 6 6.6502 -0.0584 4.2137 12 8 7.8001 -0.2937 4.8969 13 6 8.8379 0.5307 4.6506 14 1 8.7181 1.3615 3.9710 15 6 10.0589 0.3120 5.2696 16 7 10.2047 -0.6999 6.0979 17 14 11.4968 1.4548 4.9289 18 1 11.4827 2.5730 5.9058 19 1 12.7697 0.7008 5.0578 20 1 11.3811 1.9989 3.5520 21 6 5.5170 -0.8174 4.4645 22 7 4.3961 -0.5945 3.8053 23 6 3.1234 3.0011 1.6558 24 8 2.4989 3.8780 1.1073 25 8 3.9233 3.2947 2.6929 26 6 3.9886 4.6864 3.1018 27 6 4.9438 4.8250 4.2889 28 1 -0.5399 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 4.0438 2.0589 -0.7630 32 1 4.0322 0.2644 -0.3374 33 1 2.3315 0.0064 2.4349 34 1 5.3253 1.9255 1.8287 35 1 7.4616 1.5562 3.0360 36 1 11.0592 -0.8531 6.5307 37 1 5.5523 -1.5994 5.2085 38 1 4.3514 5.2923 2.2714 39 1 2.9948 5.0266 3.3928 40 1 4.9925 5.8696 4.5961 41 1 4.5814 4.2189 5.1194 42 1 5.9375 4.4848 3.9975 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170919729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:59 Heat of formation + Delta-G solvation = -13.788079 kcal Electronic energy + Delta-G solvation = -26760.318996 eV Core-core repulsion = 22901.542375 eV Total energy + Delta-G solvation = -3858.776622 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.97003 -39.48482 -38.44332 -37.09998 -36.38410 -33.78492 -32.39740 -31.89091 -31.63998 -31.17891 -27.90591 -25.51400 -25.24826 -23.27494 -22.73361 -22.65042 -21.68825 -20.58123 -19.43672 -18.17004 -17.96160 -17.50873 -16.68833 -16.59879 -16.09416 -15.94147 -15.07675 -14.47799 -14.40901 -14.30636 -13.94101 -13.82687 -13.46764 -13.36223 -13.12541 -12.77084 -12.62656 -12.44757 -12.30987 -11.97090 -11.76845 -11.66697 -11.57944 -11.41563 -11.28190 -11.10662 -10.90697 -10.81335 -10.52261 -10.50573 -9.65693 -9.43749 -9.38963 -8.91873 -8.73282 -8.56715 -6.72073 -6.43048 -3.99846 1.68081 2.03730 2.09743 2.38362 2.63838 3.12684 3.12900 3.17603 3.27739 3.56247 3.96998 4.30568 4.41607 4.49258 4.73019 4.86150 4.91462 4.93834 4.97631 5.13650 5.22186 5.27123 5.32020 5.44650 5.48637 5.56192 5.65217 5.78018 5.82784 5.87790 5.97833 6.02798 6.07587 6.32524 6.41822 6.44704 6.55142 6.75133 7.08707 7.14210 7.27455 7.54853 7.72788 7.97401 8.04890 8.89191 9.02473 9.72066 10.74992 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.003713 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.421830 B = 7538.589360 C = 8549.382628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.129 4.129 3 C -0.081 4.081 4 H 0.130 0.870 5 C -0.147 4.147 6 C 0.120 3.880 7 N -0.694 5.694 8 C 0.304 3.696 9 C -0.147 4.147 10 C -0.161 4.161 11 C 0.072 3.928 12 O -0.177 6.177 13 C -0.389 4.389 14 H 0.088 0.912 15 C 0.039 3.961 16 N -0.863 5.863 17 Si 0.938 3.062 18 H -0.274 1.274 19 H -0.278 1.278 20 H -0.268 1.268 21 C 0.060 3.940 22 N -0.495 5.495 23 C 0.490 3.510 24 O -0.513 6.513 25 O -0.327 6.327 26 C 0.059 3.941 27 C -0.153 4.153 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.405 0.595 34 H 0.115 0.885 35 H 0.134 0.866 36 H 0.269 0.731 37 H 0.151 0.849 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.778 6.717 -10.698 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C -0.100 4.100 4 H 0.148 0.852 5 C -0.186 4.186 6 C 0.026 3.974 7 N -0.334 5.334 8 C 0.073 3.927 9 C -0.171 4.171 10 C -0.188 4.188 11 C 0.017 3.983 12 O -0.080 6.080 13 C -0.466 4.466 14 H 0.106 0.894 15 C -0.165 4.165 16 N -0.499 5.499 17 Si 0.763 3.237 18 H -0.200 1.200 19 H -0.203 1.203 20 H -0.193 1.193 21 C -0.099 4.099 22 N -0.210 5.210 23 C 0.332 3.668 24 O -0.401 6.401 25 O -0.242 6.242 26 C -0.015 4.015 27 C -0.210 4.210 28 H 0.122 0.878 29 H 0.117 0.883 30 H 0.136 0.864 31 H 0.127 0.873 32 H 0.137 0.863 33 H 0.241 0.759 34 H 0.133 0.867 35 H 0.152 0.848 36 H 0.079 0.921 37 H 0.168 0.832 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.307 6.355 -10.380 18.784 hybrid contribution 1.177 1.218 -0.213 1.707 sum -13.130 7.574 -10.593 18.493 Atomic orbital electron populations 1.23883 0.95739 1.02251 0.99352 1.22277 0.95523 0.96079 1.00842 1.21805 0.92837 0.98769 0.96605 0.85180 1.23702 0.95143 1.04951 0.94780 1.19632 1.08881 0.83859 0.84984 1.42935 1.11196 1.38972 1.40282 1.17723 0.86142 0.94541 0.94268 1.21038 0.92478 1.00495 1.03056 1.21357 0.98271 1.00677 0.98532 1.20245 0.89526 0.95361 0.93189 1.83992 1.16667 1.51270 1.56065 1.21225 0.88325 1.08471 1.28556 0.89439 1.25225 0.97818 0.97416 0.96022 1.70041 1.25398 1.27650 1.26775 0.85759 0.79788 0.79193 0.78960 1.19952 1.20291 1.19295 1.21375 0.85952 1.01323 1.01224 1.66826 1.27077 1.18740 1.08398 1.23080 0.75807 0.90325 0.77603 1.90639 1.44182 1.48839 1.56457 1.86848 1.60261 1.30611 1.46530 1.23085 1.00737 0.79586 0.98059 1.21795 0.99968 1.02313 0.96932 0.87803 0.88347 0.86376 0.87286 0.86301 0.75850 0.86732 0.84820 0.92085 0.83178 0.91403 0.91583 0.90463 0.91311 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 14.35 29.01 0.42 -0.95 16 2 C -0.13 -1.15 8.66 -36.02 -0.31 -1.47 16 3 C -0.08 -0.82 5.50 -91.73 -0.50 -1.33 16 4 H 0.13 1.28 7.67 -51.93 -0.40 0.88 16 5 C -0.15 -1.55 9.55 -26.69 -0.26 -1.80 16 6 C 0.12 1.52 1.75 -132.97 -0.23 1.29 16 7 N -0.69 -10.09 5.27 -48.77 -0.26 -10.34 16 8 C 0.30 5.50 7.34 -154.91 -1.14 4.37 16 9 C -0.15 -2.70 7.56 -39.24 -0.30 -3.00 16 10 C -0.16 -3.40 9.24 -39.14 -0.36 -3.76 16 11 C 0.07 1.71 6.67 -38.97 -0.26 1.45 16 12 O -0.18 -4.90 9.77 -0.08 0.00 -4.90 16 13 C -0.39 -10.58 9.49 30.87 0.29 -10.28 16 14 H 0.09 2.19 5.26 -52.49 -0.28 1.91 16 15 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 16 N -0.86 -24.93 13.67 55.48 0.76 -24.17 16 17 Si 0.94 20.14 29.55 -169.99 -5.02 15.11 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 21 C 0.06 1.30 11.14 -17.35 -0.19 1.10 16 22 N -0.49 -9.86 10.39 -12.25 -0.13 -9.99 16 23 C 0.49 7.08 7.10 36.01 0.26 7.33 16 24 O -0.51 -7.84 16.01 -18.75 -0.30 -8.15 16 25 O -0.33 -4.93 6.82 -39.26 -0.27 -5.19 16 26 C 0.06 0.73 6.19 37.16 0.23 0.96 16 27 C -0.15 -1.78 10.29 37.16 0.38 -1.39 16 28 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 29 H 0.10 0.73 8.05 -52.48 -0.42 0.31 16 30 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.11 1.03 8.14 -51.92 -0.42 0.60 16 32 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.40 5.50 8.24 -40.82 -0.34 5.17 16 34 H 0.11 1.90 5.27 -52.49 -0.28 1.63 16 35 H 0.13 2.78 5.77 -52.48 -0.30 2.48 16 36 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.15 3.05 8.06 -52.48 -0.42 2.63 16 38 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 39 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -31.38 362.85 -7.20 -38.58 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -5.37 Total: 10.11 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.07 Total: -6.52 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.37 Total: -44.51 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.57 Total: -18.24 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.38 -7.20 -38.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170919729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.791 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds