Wall clock time and date at job start Tue Mar 31 2020 13:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50705 * 119.99880 * 2 1 4 4 H 1.08993 * 115.55267 * 334.33125 * 3 2 1 5 5 C 1.53073 * 117.52882 * 188.61091 * 3 2 1 6 6 C 1.52998 * 59.98685 * 252.53344 * 5 3 2 7 7 N 1.46499 * 117.49841 * 107.50338 * 6 5 3 8 8 C 1.39122 * 120.00059 * 78.56038 * 7 6 5 9 9 C 1.39171 * 119.62746 * 1.22112 * 8 7 6 10 10 C 1.38217 * 119.16587 * 180.02562 * 9 8 7 11 11 C 1.39442 * 118.45199 * 0.02562 * 10 9 8 12 12 O 1.35809 * 120.40657 * 179.97438 * 11 10 9 13 13 C 1.34811 * 117.00140 * 3.47815 * 12 11 10 14 14 H 1.08002 * 119.99539 * 2.80514 * 13 12 11 15 15 C 1.38623 * 120.00450 * 182.80800 * 13 12 11 16 16 N 1.31583 * 120.00115 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00257 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47507 * 89.99293 * 17 15 13 19 19 H 1.48506 * 109.47273 * 209.99902 * 17 15 13 20 20 H 1.48501 * 109.46887 * 329.99521 * 17 15 13 21 21 C 1.38674 * 119.19148 * 359.97438 * 11 10 9 22 22 N 1.31934 * 120.75709 * 359.97438 * 21 11 10 23 23 C 1.50703 * 117.49987 * 252.50591 * 6 5 3 24 24 O 1.20822 * 120.00288 * 67.92630 * 23 6 5 25 25 O 1.34229 * 119.99816 * 247.92846 * 23 6 5 26 26 C 1.45197 * 117.00247 * 180.02562 * 25 23 6 27 27 C 1.52999 * 109.47370 * 180.02562 * 26 25 23 28 28 H 1.08000 * 119.99654 * 179.97438 * 1 2 3 29 29 H 1.08004 * 120.00039 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.00039 * 179.97438 * 2 1 3 31 31 H 1.09010 * 117.49223 * 145.04682 * 5 3 2 32 32 H 1.08998 * 117.51714 * 0.02562 * 5 3 2 33 33 H 0.97000 * 119.99820 * 258.55968 * 7 6 5 34 34 H 1.07999 * 120.41978 * 0.05081 * 9 8 7 35 35 H 1.08006 * 120.76952 * 180.02562 * 10 9 8 36 36 H 0.96995 * 119.99962 * 179.97438 * 16 15 13 37 37 H 1.08004 * 119.61843 * 180.02562 * 21 11 10 38 38 H 1.09005 * 109.47058 * 299.99790 * 26 25 23 39 39 H 1.09000 * 109.47224 * 59.99736 * 26 25 23 40 40 H 1.08999 * 109.47481 * 180.02562 * 27 26 25 41 41 H 1.09005 * 109.46659 * 299.99790 * 27 26 25 42 42 H 1.09000 * 109.47363 * 59.99576 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.5310 2.1554 -0.4259 5 6 3.5795 1.2468 -0.2032 6 6 3.0044 1.5776 1.1754 7 7 3.1042 0.5497 2.2144 8 6 4.3072 0.3527 2.8848 9 6 5.4038 1.1537 2.5801 10 6 6.5945 0.9494 3.2515 11 6 6.6502 -0.0584 4.2137 12 8 7.8001 -0.2937 4.8969 13 6 8.8379 0.5307 4.6506 14 1 8.7181 1.3615 3.9710 15 6 10.0589 0.3120 5.2696 16 7 10.2047 -0.6999 6.0979 17 14 11.4968 1.4548 4.9289 18 1 11.4827 2.5730 5.9058 19 1 12.7697 0.7008 5.0578 20 1 11.3811 1.9989 3.5520 21 6 5.5170 -0.8174 4.4645 22 7 4.3961 -0.5945 3.8053 23 6 3.1234 3.0011 1.6558 24 8 2.4989 3.8780 1.1073 25 8 3.9233 3.2947 2.6929 26 6 3.9886 4.6864 3.1018 27 6 4.9438 4.8250 4.2889 28 1 -0.5399 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 4.0438 2.0589 -0.7630 32 1 4.0322 0.2644 -0.3374 33 1 2.3315 0.0064 2.4349 34 1 5.3253 1.9255 1.8287 35 1 7.4616 1.5562 3.0360 36 1 11.0592 -0.8531 6.5307 37 1 5.5523 -1.5994 5.2085 38 1 4.3514 5.2923 2.2714 39 1 2.9948 5.0266 3.3928 40 1 4.9925 5.8696 4.5961 41 1 4.5814 4.2189 5.1194 42 1 5.9375 4.4848 3.9975 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170919729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:58 Heat of formation + Delta-G solvation = -32.129461 kcal Electronic energy + Delta-G solvation = -26761.114338 eV Core-core repulsion = 22901.542375 eV Total energy + Delta-G solvation = -3859.571964 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.09256 -41.09089 -39.58450 -38.72019 -37.54832 -34.95888 -34.15879 -33.03585 -32.80177 -32.59846 -29.51299 -27.20081 -26.53280 -24.50836 -23.89157 -23.76992 -23.18285 -21.55544 -20.37815 -19.99289 -19.17913 -19.00347 -17.95828 -17.74453 -17.58647 -17.17154 -16.34190 -16.19384 -15.72775 -15.37893 -15.32607 -15.11074 -14.92535 -14.63816 -14.33786 -14.20492 -13.99957 -13.67074 -13.51835 -13.30764 -13.22035 -12.96536 -12.75261 -12.55597 -12.43522 -12.14160 -12.11285 -11.98844 -11.82745 -11.57698 -11.54005 -10.95635 -10.53847 -10.37829 -10.30437 -10.15185 -8.40394 -8.33177 -6.05017 0.42999 0.68029 0.82883 1.16729 1.38872 1.47646 1.55442 1.63757 2.02734 2.22408 2.67010 2.91883 3.22932 3.46961 3.49006 3.53639 3.62752 3.87932 3.95731 3.99958 4.01492 4.13246 4.20554 4.28689 4.35061 4.41284 4.59195 4.67781 4.76477 4.85249 4.88948 4.94671 5.00162 5.09430 5.16079 5.32454 5.38309 5.51078 5.54217 5.69858 5.78987 6.03426 6.12430 6.56762 6.67371 7.03816 7.30699 7.84341 8.82575 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.003713 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.421830 B = 7538.589360 C = 8549.382628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.148 4.148 3 C -0.057 4.057 4 H 0.137 0.863 5 C -0.138 4.138 6 C 0.090 3.910 7 N -0.680 5.680 8 C 0.327 3.673 9 C -0.141 4.141 10 C -0.153 4.153 11 C 0.036 3.964 12 O -0.225 6.225 13 C -0.407 4.407 14 H 0.101 0.899 15 C -0.022 4.022 16 N -0.921 5.921 17 Si 1.013 2.987 18 H -0.265 1.265 19 H -0.274 1.274 20 H -0.252 1.252 21 C 0.059 3.941 22 N -0.504 5.504 23 C 0.490 3.510 24 O -0.523 6.523 25 O -0.348 6.348 26 C 0.055 3.945 27 C -0.149 4.149 28 H 0.118 0.882 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.412 0.588 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.271 0.729 37 H 0.153 0.847 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.052 0.948 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.333 8.379 -13.043 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C -0.076 4.076 4 H 0.154 0.846 5 C -0.177 4.177 6 C -0.002 4.002 7 N -0.319 5.319 8 C 0.094 3.906 9 C -0.164 4.164 10 C -0.180 4.180 11 C -0.017 4.017 12 O -0.131 6.131 13 C -0.483 4.483 14 H 0.118 0.882 15 C -0.219 4.219 16 N -0.559 5.559 17 Si 0.833 3.167 18 H -0.190 1.190 19 H -0.199 1.199 20 H -0.175 1.175 21 C -0.099 4.099 22 N -0.221 5.221 23 C 0.332 3.668 24 O -0.413 6.413 25 O -0.264 6.264 26 C -0.018 4.018 27 C -0.206 4.206 28 H 0.137 0.863 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.250 0.750 34 H 0.156 0.844 35 H 0.152 0.848 36 H 0.080 0.920 37 H 0.170 0.830 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.124 0.876 41 H 0.071 0.929 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.940 8.029 -12.764 21.942 hybrid contribution 1.245 0.757 0.341 1.496 sum -14.695 8.786 -12.423 21.153 Atomic orbital electron populations 1.24104 0.95430 1.03277 0.96809 1.22264 0.95935 0.95510 1.02942 1.21878 0.92712 0.99495 0.93519 0.84572 1.23831 0.95912 1.05564 0.92360 1.19945 1.12603 0.82442 0.85170 1.42963 1.09924 1.39077 1.39961 1.18062 0.87279 0.92710 0.92597 1.21177 0.91446 1.00831 1.02985 1.21467 0.99254 0.99557 0.97726 1.20574 0.89189 0.97260 0.94702 1.83959 1.17982 1.52784 1.58417 1.21730 0.88754 1.08986 1.28857 0.88202 1.26474 1.00677 0.99169 0.95616 1.70192 1.26344 1.30384 1.29024 0.84653 0.75472 0.76902 0.79643 1.18990 1.19940 1.17511 1.21476 0.85940 1.01122 1.01334 1.66938 1.26186 1.19717 1.09238 1.23277 0.75435 0.90800 0.77290 1.90630 1.44566 1.49302 1.56761 1.86812 1.60549 1.32198 1.46867 1.23267 1.01311 0.78601 0.98623 1.21806 0.98865 1.03813 0.96125 0.86337 0.87824 0.86289 0.85890 0.85972 0.75032 0.84427 0.84779 0.92007 0.82981 0.90222 0.90941 0.87612 0.92895 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 14.35 67.78 0.97 -0.97 16 2 C -0.15 -2.19 8.66 25.65 0.22 -1.97 16 3 C -0.06 -0.98 5.50 -11.51 -0.06 -1.04 16 4 H 0.14 2.22 7.67 -2.39 -0.02 2.20 16 5 C -0.14 -2.48 9.55 30.62 0.29 -2.18 16 6 C 0.09 2.06 1.75 2.86 0.00 2.07 16 7 N -0.68 -18.22 5.27 -308.20 -1.62 -19.85 16 8 C 0.33 11.37 7.34 133.04 0.98 12.34 16 9 C -0.14 -4.98 7.56 22.49 0.17 -4.81 16 10 C -0.15 -6.46 9.24 22.56 0.21 -6.25 16 11 C 0.04 1.74 6.67 22.66 0.15 1.89 16 12 O -0.23 -13.14 9.77 -23.20 -0.23 -13.37 16 13 C -0.41 -22.88 9.49 67.91 0.64 -22.24 16 14 H 0.10 5.10 5.26 -2.91 -0.02 5.08 16 15 C -0.02 -1.22 5.49 84.82 0.47 -0.75 16 16 N -0.92 -55.58 13.67 21.61 0.30 -55.28 16 17 Si 1.01 41.77 29.55 68.60 2.03 43.80 16 18 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 19 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 20 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 21 C 0.06 2.58 11.14 84.78 0.94 3.52 16 22 N -0.50 -19.83 10.39 -192.67 -2.00 -21.83 16 23 C 0.49 12.98 7.10 71.24 0.51 13.49 16 24 O -0.52 -14.73 16.01 21.98 0.35 -14.37 16 25 O -0.35 -9.87 6.82 -51.41 -0.35 -10.22 16 26 C 0.06 1.27 6.19 71.98 0.45 1.71 16 27 C -0.15 -3.28 10.29 71.98 0.74 -2.54 16 28 H 0.12 1.12 8.06 -2.91 -0.02 1.10 16 29 H 0.10 1.18 8.05 -2.91 -0.02 1.15 16 30 H 0.12 1.76 8.06 -2.91 -0.02 1.74 16 31 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.41 10.19 8.24 -92.71 -0.76 9.42 16 34 H 0.14 4.26 5.27 -2.91 -0.02 4.24 16 35 H 0.13 5.59 5.77 -2.91 -0.02 5.57 16 36 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 37 H 0.15 6.47 8.06 -2.91 -0.02 6.45 16 38 H 0.08 1.64 8.13 -2.38 -0.02 1.62 16 39 H 0.07 1.56 8.13 -2.39 -0.02 1.54 16 40 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -70.32 362.85 5.44 -64.87 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: 0.29 Total: 33.97 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 6.68 Total: -7.73 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -3.33 Total: -96.95 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -0.23 Total: -37.96 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -70.32 5.44 -64.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170919729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.745 kcal (2) G-P(sol) polarization free energy of solvation -70.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds