Wall clock time and date at job start Tue Mar 31 2020 13:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 120.00445 * 2 1 4 4 H 1.09000 * 115.55771 * 25.69136 * 3 2 1 5 5 C 1.53000 * 117.50166 * 171.37464 * 3 2 1 6 6 C 1.52992 * 117.50221 * 240.00087 * 3 2 1 7 7 N 1.46496 * 117.49957 * 359.97438 * 6 3 2 8 8 C 1.39120 * 120.00365 * 225.96628 * 7 6 3 9 9 C 1.39165 * 119.63012 * 339.91067 * 8 7 6 10 10 C 1.38211 * 119.17380 * 179.69999 * 9 8 7 11 11 C 1.39447 * 118.44624 * 0.28050 * 10 9 8 12 12 O 1.35815 * 120.40654 * 179.97438 * 11 10 9 13 13 C 1.34812 * 116.99903 * 353.30095 * 12 11 10 14 14 H 1.08005 * 119.99816 * 6.60220 * 13 12 11 15 15 C 1.38624 * 120.00190 * 186.60730 * 13 12 11 16 16 N 1.31583 * 119.99895 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00022 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47176 * 90.00392 * 17 15 13 19 19 H 1.48500 * 109.47325 * 209.99979 * 17 15 13 20 20 H 1.48502 * 109.47390 * 330.00440 * 17 15 13 21 21 C 1.38670 * 119.19509 * 359.97438 * 11 10 9 22 22 N 1.31938 * 120.75434 * 359.97438 * 21 11 10 23 23 C 1.50697 * 117.51840 * 145.02780 * 6 3 2 24 24 O 1.20825 * 120.00194 * 0.63106 * 23 6 3 25 25 O 1.34233 * 120.00124 * 180.62978 * 23 6 3 26 26 C 1.45198 * 116.99914 * 179.97438 * 25 23 6 27 27 C 1.53004 * 109.46902 * 179.97438 * 26 25 23 28 28 H 1.08001 * 119.99689 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00222 * 180.02562 * 1 2 3 30 30 H 1.08008 * 119.99661 * 180.02562 * 2 1 3 31 31 H 1.08995 * 117.49453 * 0.02562 * 5 3 2 32 32 H 1.09001 * 117.52148 * 214.97491 * 5 3 2 33 33 H 0.97005 * 119.99650 * 45.96567 * 7 6 3 34 34 H 1.08004 * 120.41766 * 359.97438 * 9 8 7 35 35 H 1.07999 * 120.77714 * 180.25455 * 10 9 8 36 36 H 0.97001 * 119.99451 * 180.02562 * 16 15 13 37 37 H 1.08000 * 119.62503 * 180.02562 * 21 11 10 38 38 H 1.08994 * 109.47847 * 300.00390 * 26 25 23 39 39 H 1.09002 * 109.47015 * 60.00792 * 26 25 23 40 40 H 1.09002 * 109.46592 * 60.00590 * 27 26 25 41 41 H 1.09000 * 109.47300 * 180.02562 * 27 26 25 42 42 H 1.09000 * 109.47525 * 300.00458 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.5313 2.1554 0.4263 5 6 3.5788 1.2459 0.2035 6 6 3.0044 1.5775 -1.1752 7 7 3.1043 0.5496 -2.2142 8 6 4.3523 0.1607 -2.6904 9 6 5.4484 0.9996 -2.5130 10 6 6.6850 0.6012 -2.9843 11 6 6.7846 -0.6315 -3.6286 12 8 7.9803 -1.0621 -4.1077 13 6 9.0098 -0.1933 -4.0543 14 1 8.8915 0.7537 -3.5485 15 6 10.2201 -0.5153 -4.6486 16 7 11.2247 0.3330 -4.5968 17 14 10.4248 -2.1533 -5.5228 18 1 10.0471 -2.0027 -6.9511 19 1 11.8407 -2.5910 -5.4288 20 1 9.5493 -3.1683 -4.8837 21 6 5.6480 -1.4125 -3.7741 22 7 4.4831 -1.0013 -3.3109 23 6 3.1249 3.0010 -1.6551 24 8 2.4999 3.8781 -1.1075 25 8 3.9265 3.2945 -2.6910 26 6 3.9931 4.6863 -3.0993 27 6 4.9502 4.8246 -4.2850 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 4.0306 0.2630 0.3370 32 1 4.0438 2.0572 0.7635 33 1 2.3002 0.1401 -2.5702 34 1 5.3351 1.9483 -2.0092 35 1 7.5538 1.2300 -2.8569 36 1 12.0714 0.1078 -5.0130 37 1 5.7173 -2.3686 -4.2716 38 1 3.0000 5.0271 -3.3918 39 1 4.3549 5.2918 -2.2683 40 1 4.5887 4.2191 -5.1162 41 1 5.0005 5.8695 -4.5913 42 1 5.9433 4.4840 -3.9921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170919734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:11 Heat of formation + Delta-G solvation = -12.849648 kcal Electronic energy + Delta-G solvation = -26620.995631 eV Core-core repulsion = 22762.259703 eV Total energy + Delta-G solvation = -3858.735928 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.98874 -39.63802 -38.49994 -37.27025 -36.44295 -33.81432 -32.44598 -31.98171 -31.70190 -31.31426 -28.18622 -25.57826 -25.08780 -23.29048 -22.82209 -22.74637 -21.60057 -20.58116 -19.49072 -18.20796 -18.00151 -17.51513 -16.79816 -16.61914 -16.34449 -16.06700 -15.19419 -14.53223 -14.37066 -14.24477 -14.10317 -13.84341 -13.63458 -13.33523 -12.90638 -12.81940 -12.63198 -12.45961 -12.43601 -12.26907 -11.99170 -11.74717 -11.62719 -11.47569 -11.30395 -10.99877 -10.91203 -10.76414 -10.56853 -10.28972 -9.65408 -9.52152 -9.37215 -9.01252 -8.86325 -8.62695 -6.90582 -6.42316 -4.07509 1.67471 1.97190 2.04467 2.22256 2.56752 3.20826 3.26010 3.26988 3.40654 3.54243 4.23476 4.30936 4.38771 4.44141 4.65104 4.84229 4.86962 4.87282 4.91480 4.95398 5.10644 5.17945 5.28025 5.38028 5.44862 5.56320 5.60512 5.74039 5.76866 5.85000 5.88449 5.95228 6.01623 6.34229 6.37826 6.44767 6.46578 6.69148 6.94304 7.07012 7.43127 7.66135 7.68993 7.93283 8.03313 8.76634 8.93249 9.54422 10.65530 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014985 B = 0.003710 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.125952 B = 7544.410417 C = 8835.858174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.124 4.124 3 C -0.081 4.081 4 H 0.130 0.870 5 C -0.140 4.140 6 C 0.116 3.884 7 N -0.695 5.695 8 C 0.308 3.692 9 C -0.153 4.153 10 C -0.150 4.150 11 C 0.079 3.921 12 O -0.216 6.216 13 C -0.388 4.388 14 H 0.103 0.897 15 C 0.063 3.937 16 N -0.881 5.881 17 Si 0.905 3.095 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.259 1.259 21 C 0.059 3.941 22 N -0.493 5.493 23 C 0.490 3.510 24 O -0.512 6.512 25 O -0.332 6.332 26 C 0.060 3.940 27 C -0.154 4.154 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.404 0.596 34 H 0.123 0.877 35 H 0.141 0.859 36 H 0.279 0.721 37 H 0.151 0.849 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.964 4.439 6.980 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.142 4.142 3 C -0.100 4.100 4 H 0.148 0.852 5 C -0.178 4.178 6 C 0.023 3.977 7 N -0.335 5.335 8 C 0.077 3.923 9 C -0.177 4.177 10 C -0.177 4.177 11 C 0.024 3.976 12 O -0.120 6.120 13 C -0.464 4.464 14 H 0.120 0.880 15 C -0.140 4.140 16 N -0.519 5.519 17 Si 0.731 3.269 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.183 1.183 21 C -0.100 4.100 22 N -0.208 5.208 23 C 0.331 3.669 24 O -0.400 6.400 25 O -0.247 6.247 26 C -0.014 4.014 27 C -0.211 4.211 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.241 0.759 34 H 0.141 0.859 35 H 0.158 0.842 36 H 0.089 0.911 37 H 0.168 0.832 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.433 4.140 6.914 19.206 hybrid contribution 0.750 0.204 -0.503 0.926 sum -16.683 4.343 6.411 18.393 Atomic orbital electron populations 1.23861 0.95730 1.02175 0.99757 1.22262 0.95458 0.96058 1.00428 1.21822 0.92796 0.98788 0.96560 0.85212 1.23598 0.95294 1.04994 0.93903 1.19630 1.09360 0.83764 0.84975 1.42825 1.05242 1.42626 1.42835 1.17766 0.85653 0.90411 0.98437 1.21330 0.92185 0.99525 1.04634 1.21518 0.98010 0.97422 1.00704 1.20035 0.87413 0.93852 0.96254 1.83588 1.14843 1.40612 1.72981 1.20692 0.88734 1.00153 1.36775 0.87955 1.24447 0.94078 0.99000 0.96484 1.69659 1.03134 1.35556 1.43598 0.86180 0.77461 0.83132 0.80137 1.19912 1.20872 1.18254 1.21405 0.84992 1.00400 1.03167 1.66886 1.26228 1.14027 1.13670 1.23154 0.75775 0.90467 0.77511 1.90644 1.44149 1.48875 1.56310 1.86740 1.60401 1.30792 1.46815 1.23093 1.00780 0.79420 0.98126 1.21809 0.99961 1.02434 0.96892 0.88402 0.87866 0.86407 0.86314 0.87130 0.75876 0.85882 0.84177 0.91098 0.83202 0.91489 0.91292 0.91350 0.90367 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 14.35 29.02 0.42 -0.99 16 2 C -0.12 -1.13 8.92 -36.03 -0.32 -1.45 16 3 C -0.08 -0.81 5.50 -91.78 -0.50 -1.32 16 4 H 0.13 1.27 7.67 -51.93 -0.40 0.87 16 5 C -0.14 -1.50 9.59 -26.73 -0.26 -1.75 16 6 C 0.12 1.44 1.79 -132.98 -0.24 1.20 16 7 N -0.70 -9.69 5.01 -48.78 -0.24 -9.94 16 8 C 0.31 5.34 7.43 -154.91 -1.15 4.18 16 9 C -0.15 -2.76 8.28 -39.25 -0.32 -3.09 16 10 C -0.15 -3.11 9.25 -39.14 -0.36 -3.47 16 11 C 0.08 1.76 6.66 -38.97 -0.26 1.50 16 12 O -0.22 -5.50 8.59 -0.10 0.00 -5.50 16 13 C -0.39 -10.61 9.95 30.87 0.31 -10.30 16 14 H 0.10 2.85 5.50 -52.48 -0.29 2.56 16 15 C 0.06 1.73 5.49 -17.52 -0.10 1.63 16 16 N -0.88 -25.00 13.96 55.48 0.77 -24.23 16 17 Si 0.91 21.26 28.61 -169.99 -4.86 16.40 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 21 C 0.06 1.18 11.14 -17.35 -0.19 0.99 16 22 N -0.49 -9.24 10.39 -12.25 -0.13 -9.36 16 23 C 0.49 6.80 7.20 36.00 0.26 7.06 16 24 O -0.51 -7.61 16.01 -18.75 -0.30 -7.91 16 25 O -0.33 -4.74 7.29 -39.27 -0.29 -5.02 16 26 C 0.06 0.69 6.19 37.16 0.23 0.92 16 27 C -0.15 -1.65 10.29 37.16 0.38 -1.27 16 28 H 0.10 0.72 8.05 -52.49 -0.42 0.30 16 29 H 0.10 0.69 8.06 -52.48 -0.42 0.26 16 30 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 31 H 0.12 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.40 5.29 8.67 -40.82 -0.35 4.93 16 34 H 0.12 2.04 5.01 -52.48 -0.26 1.78 16 35 H 0.14 3.02 5.77 -52.49 -0.30 2.72 16 36 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.15 2.72 8.06 -52.49 -0.42 2.30 16 38 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 39 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 363.37 15.07 5.48 5.48 Total: -1.00 -30.18 363.37 -7.08 -37.26 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -5.39 Total: 8.97 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.11 Total: -6.15 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.40 Total: -43.53 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.59 Total: -18.43 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.86 Total: 16.40 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.18 -7.08 -37.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170919734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.410 kcal (2) G-P(sol) polarization free energy of solvation -30.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds