Wall clock time and date at job start Tue Mar 31 2020 13:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 120.00445 * 2 1 4 4 H 1.09000 * 115.55771 * 25.69136 * 3 2 1 5 5 C 1.53000 * 117.50166 * 171.37464 * 3 2 1 6 6 C 1.52992 * 117.50221 * 240.00087 * 3 2 1 7 7 N 1.46496 * 117.49957 * 359.97438 * 6 3 2 8 8 C 1.39120 * 120.00365 * 225.96628 * 7 6 3 9 9 C 1.39165 * 119.63012 * 339.91067 * 8 7 6 10 10 C 1.38211 * 119.17380 * 179.69999 * 9 8 7 11 11 C 1.39447 * 118.44624 * 0.28050 * 10 9 8 12 12 O 1.35815 * 120.40654 * 179.97438 * 11 10 9 13 13 C 1.34812 * 116.99903 * 353.30095 * 12 11 10 14 14 H 1.08005 * 119.99816 * 6.60220 * 13 12 11 15 15 C 1.38624 * 120.00190 * 186.60730 * 13 12 11 16 16 N 1.31583 * 119.99895 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00022 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47176 * 90.00392 * 17 15 13 19 19 H 1.48500 * 109.47325 * 209.99979 * 17 15 13 20 20 H 1.48502 * 109.47390 * 330.00440 * 17 15 13 21 21 C 1.38670 * 119.19509 * 359.97438 * 11 10 9 22 22 N 1.31938 * 120.75434 * 359.97438 * 21 11 10 23 23 C 1.50697 * 117.51840 * 145.02780 * 6 3 2 24 24 O 1.20825 * 120.00194 * 0.63106 * 23 6 3 25 25 O 1.34233 * 120.00124 * 180.62978 * 23 6 3 26 26 C 1.45198 * 116.99914 * 179.97438 * 25 23 6 27 27 C 1.53004 * 109.46902 * 179.97438 * 26 25 23 28 28 H 1.08001 * 119.99689 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00222 * 180.02562 * 1 2 3 30 30 H 1.08008 * 119.99661 * 180.02562 * 2 1 3 31 31 H 1.08995 * 117.49453 * 0.02562 * 5 3 2 32 32 H 1.09001 * 117.52148 * 214.97491 * 5 3 2 33 33 H 0.97005 * 119.99650 * 45.96567 * 7 6 3 34 34 H 1.08004 * 120.41766 * 359.97438 * 9 8 7 35 35 H 1.07999 * 120.77714 * 180.25455 * 10 9 8 36 36 H 0.97001 * 119.99451 * 180.02562 * 16 15 13 37 37 H 1.08000 * 119.62503 * 180.02562 * 21 11 10 38 38 H 1.08994 * 109.47847 * 300.00390 * 26 25 23 39 39 H 1.09002 * 109.47015 * 60.00792 * 26 25 23 40 40 H 1.09002 * 109.46592 * 60.00590 * 27 26 25 41 41 H 1.09000 * 109.47300 * 180.02562 * 27 26 25 42 42 H 1.09000 * 109.47525 * 300.00458 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.5313 2.1554 0.4263 5 6 3.5788 1.2459 0.2035 6 6 3.0044 1.5775 -1.1752 7 7 3.1043 0.5496 -2.2142 8 6 4.3523 0.1607 -2.6904 9 6 5.4484 0.9996 -2.5130 10 6 6.6850 0.6012 -2.9843 11 6 6.7846 -0.6315 -3.6286 12 8 7.9803 -1.0621 -4.1077 13 6 9.0098 -0.1933 -4.0543 14 1 8.8915 0.7537 -3.5485 15 6 10.2201 -0.5153 -4.6486 16 7 11.2247 0.3330 -4.5968 17 14 10.4248 -2.1533 -5.5228 18 1 10.0471 -2.0027 -6.9511 19 1 11.8407 -2.5910 -5.4288 20 1 9.5493 -3.1683 -4.8837 21 6 5.6480 -1.4125 -3.7741 22 7 4.4831 -1.0013 -3.3109 23 6 3.1249 3.0010 -1.6551 24 8 2.4999 3.8781 -1.1075 25 8 3.9265 3.2945 -2.6910 26 6 3.9931 4.6863 -3.0993 27 6 4.9502 4.8246 -4.2850 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 4.0306 0.2630 0.3370 32 1 4.0438 2.0572 0.7635 33 1 2.3002 0.1401 -2.5702 34 1 5.3351 1.9483 -2.0092 35 1 7.5538 1.2300 -2.8569 36 1 12.0714 0.1078 -5.0130 37 1 5.7173 -2.3686 -4.2716 38 1 3.0000 5.0271 -3.3918 39 1 4.3549 5.2918 -2.2683 40 1 4.5887 4.2191 -5.1162 41 1 5.0005 5.8695 -4.5913 42 1 5.9433 4.4840 -3.9921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170919734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:10 Heat of formation + Delta-G solvation = -29.681870 kcal Electronic energy + Delta-G solvation = -26621.725531 eV Core-core repulsion = 22762.259703 eV Total energy + Delta-G solvation = -3859.465828 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.09008 -41.19827 -39.65731 -38.81504 -37.56451 -34.96857 -34.32697 -33.09498 -32.85627 -32.60877 -29.75140 -27.10641 -26.48700 -24.59198 -23.93531 -23.76378 -23.07803 -21.55403 -20.42397 -20.03941 -19.22859 -19.03240 -18.03148 -17.84275 -17.66156 -17.29553 -16.44485 -16.18279 -15.84543 -15.38197 -15.32479 -15.07465 -14.79884 -14.51657 -14.47631 -14.38180 -14.12038 -13.91342 -13.67456 -13.37213 -13.24769 -12.97341 -12.77559 -12.56242 -12.46076 -12.10652 -12.07972 -12.00562 -11.76401 -11.61901 -11.56164 -11.02118 -10.64411 -10.50820 -10.33140 -10.13149 -8.45575 -8.44967 -6.15190 0.37737 0.61597 0.75798 1.15720 1.36908 1.40270 1.57206 1.62024 2.03718 2.32717 2.64681 2.83250 3.05472 3.21436 3.46287 3.48641 3.56963 3.86506 3.95382 3.98298 4.00590 4.10582 4.17216 4.27733 4.30656 4.38321 4.56063 4.64509 4.75356 4.84930 4.87210 4.91574 5.06811 5.08825 5.15655 5.35264 5.37087 5.43975 5.67806 5.71058 5.79418 5.97130 6.11716 6.56118 6.67561 6.89310 7.23410 7.62490 8.66097 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014985 B = 0.003710 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.125952 B = 7544.410417 C = 8835.858174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.144 4.144 3 C -0.055 4.055 4 H 0.137 0.863 5 C -0.138 4.138 6 C 0.092 3.908 7 N -0.681 5.681 8 C 0.333 3.667 9 C -0.152 4.152 10 C -0.150 4.150 11 C 0.042 3.958 12 O -0.238 6.238 13 C -0.394 4.394 14 H 0.081 0.919 15 C 0.011 3.989 16 N -0.924 5.924 17 Si 0.968 3.032 18 H -0.268 1.268 19 H -0.271 1.271 20 H -0.259 1.259 21 C 0.072 3.928 22 N -0.497 5.497 23 C 0.490 3.510 24 O -0.523 6.523 25 O -0.351 6.351 26 C 0.055 3.945 27 C -0.150 4.150 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.412 0.588 34 H 0.139 0.861 35 H 0.124 0.876 36 H 0.283 0.717 37 H 0.169 0.831 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.105 0.895 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.657 3.906 7.560 21.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C -0.074 4.074 4 H 0.155 0.845 5 C -0.176 4.176 6 C -0.001 4.001 7 N -0.320 5.320 8 C 0.100 3.900 9 C -0.175 4.175 10 C -0.177 4.177 11 C -0.010 4.010 12 O -0.145 6.145 13 C -0.471 4.471 14 H 0.098 0.902 15 C -0.188 4.188 16 N -0.566 5.566 17 Si 0.790 3.210 18 H -0.193 1.193 19 H -0.196 1.196 20 H -0.183 1.183 21 C -0.086 4.086 22 N -0.214 5.214 23 C 0.332 3.668 24 O -0.412 6.412 25 O -0.267 6.267 26 C -0.018 4.018 27 C -0.207 4.207 28 H 0.123 0.877 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.251 0.749 34 H 0.156 0.844 35 H 0.142 0.858 36 H 0.093 0.907 37 H 0.186 0.814 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.123 0.877 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.194 3.619 7.517 21.850 hybrid contribution 1.204 0.524 -0.528 1.416 sum -18.990 4.144 6.989 20.655 Atomic orbital electron populations 1.24083 0.95315 1.03272 0.96966 1.22211 0.95903 0.95347 1.02781 1.21878 0.92407 0.99507 0.93602 0.84496 1.23702 0.96333 1.05262 0.92256 1.19903 1.12536 0.82526 0.85100 1.42831 1.04107 1.42342 1.42722 1.18028 0.86695 0.89412 0.95869 1.21398 0.91316 1.00257 1.04555 1.21525 0.98616 0.96940 1.00579 1.20392 0.87362 0.95266 0.97992 1.83533 1.15374 1.40432 1.75121 1.20644 0.89832 0.99907 1.36684 0.90194 1.25224 0.93731 1.02422 0.97377 1.69742 1.03825 1.37509 1.45482 0.85248 0.77800 0.78905 0.79019 1.19259 1.19632 1.18255 1.21715 0.84385 1.00556 1.01914 1.67059 1.25374 1.14486 1.14441 1.23322 0.75407 0.90845 0.77237 1.90634 1.44616 1.49319 1.56646 1.86714 1.60582 1.32338 1.47053 1.23283 1.01514 0.78403 0.98608 1.21820 0.98668 1.03964 0.96245 0.87685 0.86416 0.86720 0.86496 0.86012 0.74938 0.84372 0.85807 0.90715 0.81356 0.90564 0.90572 0.92227 0.87665 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 14.35 67.78 0.97 -0.99 16 2 C -0.14 -2.21 8.92 25.65 0.23 -1.98 16 3 C -0.06 -0.96 5.50 -11.54 -0.06 -1.03 16 4 H 0.14 2.25 7.67 -2.39 -0.02 2.24 16 5 C -0.14 -2.65 9.59 30.59 0.29 -2.35 16 6 C 0.09 2.08 1.79 2.85 0.01 2.08 16 7 N -0.68 -17.45 5.01 -308.24 -1.54 -19.00 16 8 C 0.33 10.98 7.43 133.04 0.99 11.97 16 9 C -0.15 -5.38 8.28 22.49 0.19 -5.19 16 10 C -0.15 -6.37 9.25 22.55 0.21 -6.16 16 11 C 0.04 1.89 6.66 22.66 0.15 2.05 16 12 O -0.24 -12.42 8.59 -23.28 -0.20 -12.62 16 13 C -0.39 -22.45 9.95 67.91 0.68 -21.78 16 14 H 0.08 4.75 5.50 -2.91 -0.02 4.73 16 15 C 0.01 0.60 5.49 84.82 0.47 1.07 16 16 N -0.92 -54.20 13.96 21.61 0.30 -53.90 16 17 Si 0.97 44.40 28.61 68.60 1.96 46.36 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 20 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 21 C 0.07 2.81 11.14 84.78 0.94 3.76 16 22 N -0.50 -17.77 10.39 -192.67 -2.00 -19.77 16 23 C 0.49 12.75 7.20 71.24 0.51 13.26 16 24 O -0.52 -14.56 16.01 21.97 0.35 -14.21 16 25 O -0.35 -9.61 7.29 -51.45 -0.38 -9.99 16 26 C 0.06 1.22 6.19 71.98 0.45 1.67 16 27 C -0.15 -3.12 10.29 71.98 0.74 -2.38 16 28 H 0.10 1.16 8.05 -2.91 -0.02 1.14 16 29 H 0.12 1.13 8.06 -2.91 -0.02 1.11 16 30 H 0.11 1.86 8.06 -2.91 -0.02 1.83 16 31 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.41 9.65 8.67 -92.70 -0.80 8.85 16 34 H 0.14 4.49 5.01 -2.91 -0.01 4.47 16 35 H 0.12 5.66 5.77 -2.91 -0.02 5.65 16 36 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.17 5.86 8.06 -2.91 -0.02 5.84 16 38 H 0.08 1.54 8.13 -2.39 -0.02 1.52 16 39 H 0.08 1.57 8.13 -2.39 -0.02 1.55 16 40 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -65.79 363.37 5.50 -60.28 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 0.25 Total: 28.82 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 6.76 Total: -5.99 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -3.24 Total: -92.66 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.22 Total: -36.81 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.96 Total: 46.36 kcal Total: -65.79 5.50 -60.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170919734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.602 kcal (2) G-P(sol) polarization free energy of solvation -65.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds