Wall clock time and date at job start Tue Mar 31 2020 13:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34836 * 117.00344 * 2 1 4 4 O 1.21574 * 119.99925 * 359.97438 * 3 2 1 5 5 C 1.47009 * 120.00418 * 179.97438 * 3 2 1 6 6 C 1.39575 * 120.48374 * 355.95087 * 5 3 2 7 7 C 1.37800 * 120.14210 * 179.97438 * 6 5 3 8 8 C 1.39423 * 121.19824 * 359.97438 * 7 6 5 9 9 N 1.39149 * 119.49843 * 179.97438 * 8 7 6 10 10 C 1.46490 * 120.00153 * 0.02562 * 9 8 7 11 11 C 1.53504 * 114.20746 * 154.99952 * 10 9 8 12 12 N 1.47073 * 87.98525 * 87.51780 * 11 10 9 13 13 C 1.34772 * 136.05456 * 207.09002 * 12 11 10 14 14 C 1.50703 * 119.99827 * 179.97438 * 13 12 11 15 15 O 1.21279 * 120.00540 * 0.02562 * 13 12 11 16 16 C 1.47069 * 87.88565 * 27.12118 * 12 11 10 17 17 C 1.38439 * 120.99574 * 0.23175 * 8 7 6 18 18 C 1.40509 * 119.76818 * 359.51671 * 17 8 7 19 19 C 1.40945 * 120.56336 * 180.22878 * 18 17 8 20 20 H 1.07997 * 119.99896 * 213.18832 * 19 18 17 21 21 C 1.40247 * 119.99762 * 33.19188 * 19 18 17 22 22 N 1.30629 * 120.00630 * 9.35356 * 21 19 18 23 23 Si 1.86800 * 119.99512 * 189.35084 * 21 19 18 24 24 H 1.48497 * 109.47512 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46994 * 119.99993 * 23 21 19 26 26 H 1.48496 * 109.47332 * 239.99985 * 23 21 19 27 27 H 1.08998 * 109.46748 * 59.99974 * 1 2 3 28 28 H 1.08994 * 109.47909 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46851 * 300.00686 * 1 2 3 30 30 H 1.08004 * 119.93186 * 359.97189 * 6 5 3 31 31 H 1.07999 * 119.40333 * 179.97438 * 7 6 5 32 32 H 0.97000 * 119.99234 * 179.97438 * 9 8 7 33 33 H 1.09000 * 113.41547 * 21.79544 * 10 9 8 34 34 H 1.08991 * 113.46363 * 332.73885 * 11 10 9 35 35 H 1.08995 * 113.47014 * 202.29391 * 11 10 9 36 36 H 1.09008 * 109.46414 * 60.00433 * 14 13 12 37 37 H 1.08998 * 109.47137 * 179.97438 * 14 13 12 38 38 H 1.08996 * 109.47700 * 300.00107 * 14 13 12 39 39 H 1.09000 * 113.46698 * 87.66185 * 16 12 11 40 40 H 1.08995 * 113.46723 * 218.04445 * 16 12 11 41 41 H 1.07995 * 120.11525 * 179.72189 * 17 8 7 42 42 H 0.96996 * 120.00627 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4021 2.2210 -0.0005 5 6 3.5322 1.2783 0.0006 6 6 4.3021 0.1172 0.0860 7 6 5.6778 0.1975 0.0855 8 6 6.3294 1.4271 -0.0001 9 7 7.7203 1.4671 0.0028 10 6 8.4887 0.2232 0.0947 11 6 9.9016 0.3109 -0.4989 12 7 10.3666 0.7884 0.8121 13 6 11.3744 1.5622 1.2614 14 6 11.5196 1.8284 2.7376 15 8 12.1639 2.0452 0.4776 16 6 9.2484 0.0491 1.4172 17 6 5.6135 2.6091 -0.0826 18 6 4.2089 2.5749 -0.0908 19 6 3.4634 3.7678 -0.1791 20 1 2.5097 3.8468 0.3215 21 6 3.9601 4.8521 -0.9170 22 7 5.0170 4.7007 -1.6696 23 14 3.1100 6.5128 -0.8239 24 1 1.9448 6.4219 0.0922 25 1 4.0638 7.5291 -0.3113 26 1 2.6459 6.9080 -2.1780 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 3.8186 -0.8462 0.1528 31 1 6.2618 -0.7085 0.1525 32 1 8.1811 2.3186 -0.0568 33 1 7.9267 -0.6571 -0.2171 34 1 9.9946 1.0550 -1.2898 35 1 10.3152 -0.6576 -0.7797 36 1 11.6571 0.8845 3.2651 37 1 12.3850 2.4688 2.9079 38 1 10.6220 2.3240 3.1075 39 1 9.4881 -0.9892 1.6466 40 1 8.7868 0.5702 2.2558 41 1 6.1329 3.5540 -0.1438 42 1 5.3608 5.4506 -2.1797 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171080177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:59 Heat of formation + Delta-G solvation = -53.453284 kcal Electronic energy + Delta-G solvation = -26124.910830 eV Core-core repulsion = 22264.414196 eV Total energy + Delta-G solvation = -3860.496634 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 3.16 seconds Orbital eigenvalues (eV) -40.51959 -39.16243 -38.22343 -37.18393 -35.27903 -34.17758 -33.14529 -30.93285 -29.76479 -28.85827 -27.71473 -26.54602 -25.98069 -25.50363 -22.25754 -22.01630 -20.62509 -19.54398 -18.81660 -17.51051 -17.07863 -16.63806 -16.35810 -15.82938 -15.72120 -15.56754 -15.30430 -14.97758 -14.85099 -13.77699 -13.57691 -13.31011 -13.07124 -12.98374 -12.76851 -12.71962 -12.51157 -12.36978 -12.21780 -11.99084 -11.62999 -11.50409 -11.42557 -11.18032 -10.96633 -10.86424 -10.66641 -10.32039 -9.92806 -9.88874 -9.64530 -9.45320 -9.04773 -8.80273 -8.77711 -7.47888 -6.94094 -6.48900 -4.53979 2.27510 2.56602 2.77680 2.79144 3.05773 3.14923 3.19245 3.79167 3.85428 3.90235 3.95117 4.33035 4.51882 4.65711 4.95097 5.08026 5.14944 5.26752 5.29646 5.43603 5.52721 5.55648 5.62200 5.65357 5.70522 5.73955 5.84767 5.87219 6.05447 6.27512 6.41723 6.72162 6.90638 7.08603 7.12512 7.39859 7.46063 7.59401 7.65931 7.76284 7.95617 8.08152 8.30439 8.37147 8.61317 8.74226 8.83395 9.16564 10.03382 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012097 B = 0.003762 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.990766 B = 7440.908137 C = 9277.726836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.376 6.376 3 C 0.505 3.495 4 O -0.525 6.525 5 C -0.286 4.286 6 C 0.004 3.996 7 C -0.306 4.306 8 C 0.239 3.761 9 N -0.729 5.729 10 C 0.129 3.871 11 C 0.087 3.913 12 N -0.645 5.645 13 C 0.538 3.462 14 C -0.167 4.167 15 O -0.552 6.552 16 C 0.074 3.926 17 C -0.232 4.232 18 C 0.182 3.818 19 C -0.417 4.417 20 H 0.110 0.890 21 C 0.070 3.930 22 N -0.779 5.779 23 Si 0.916 3.084 24 H -0.255 1.255 25 H -0.272 1.272 26 H -0.273 1.273 27 H 0.053 0.947 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.396 0.604 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.119 0.881 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.323 -8.719 5.439 11.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.295 6.295 3 C 0.357 3.643 4 O -0.417 6.417 5 C -0.290 4.290 6 C -0.015 4.015 7 C -0.328 4.328 8 C 0.139 3.861 9 N -0.359 5.359 10 C 0.020 3.980 11 C -0.037 4.037 12 N -0.382 5.382 13 C 0.329 3.671 14 C -0.226 4.226 15 O -0.431 6.431 16 C -0.051 4.051 17 C -0.256 4.256 18 C 0.177 3.823 19 C -0.444 4.444 20 H 0.128 0.872 21 C -0.150 4.150 22 N -0.403 5.403 23 Si 0.740 3.260 24 H -0.179 1.179 25 H -0.197 1.197 26 H -0.198 1.198 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.122 0.878 31 H 0.115 0.885 32 H 0.230 0.770 33 H 0.135 0.865 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.137 0.863 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.876 -8.072 4.953 11.145 hybrid contribution -0.219 0.984 -0.109 1.014 sum 5.657 -7.088 4.843 10.281 Atomic orbital electron populations 1.22943 0.78863 1.01873 1.01670 1.86585 1.21322 1.35260 1.86287 1.21288 0.89590 0.80087 0.73384 1.90710 1.66977 1.35234 1.48775 1.19652 0.86667 0.94295 1.28354 1.20606 0.92943 0.96022 0.91941 1.19806 0.93924 0.94592 1.24463 1.17696 0.81253 0.94421 0.92680 1.44040 1.03306 1.05827 1.82700 1.21925 0.90881 0.91007 0.94199 1.23496 0.92023 1.00142 0.88005 1.49705 1.28672 1.48538 1.11237 1.20380 0.78169 0.77362 0.91217 1.21842 1.04840 1.03927 0.91998 1.90722 1.42160 1.51560 1.58622 1.23851 0.84767 0.96657 0.99874 1.20616 0.93446 0.95082 1.16419 1.18115 0.90589 0.89811 0.83750 1.20361 1.05391 0.94806 1.23861 0.87199 1.26173 0.94152 1.01101 0.93543 1.69747 1.19067 1.32999 1.18472 0.86115 0.80388 0.80170 0.79359 1.17875 1.19742 1.19780 0.92850 0.89569 0.92927 0.87821 0.88520 0.76968 0.86458 0.90018 0.88956 0.89671 0.89075 0.89303 0.89207 0.89806 0.86279 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.57 101.05 1.07 1.71 16 2 O -0.38 -7.54 9.84 -40.86 -0.40 -7.94 16 3 C 0.50 12.00 7.86 34.28 0.27 12.27 16 4 O -0.53 -13.62 13.47 -19.32 -0.26 -13.88 16 5 C -0.29 -6.91 6.07 -102.50 -0.62 -7.53 16 6 C 0.00 0.08 9.60 -39.24 -0.38 -0.29 16 7 C -0.31 -5.85 9.21 -39.30 -0.36 -6.21 16 8 C 0.24 4.79 6.63 -84.02 -0.56 4.24 16 9 N -0.73 -11.69 5.54 -52.10 -0.29 -11.97 16 10 C 0.13 1.54 4.40 -67.81 -0.30 1.24 16 11 C 0.09 0.99 8.38 -8.49 -0.07 0.92 16 12 N -0.65 -7.77 3.69 -185.19 -0.68 -8.45 16 13 C 0.54 7.33 8.19 -10.99 -0.09 7.24 16 14 C -0.17 -1.55 10.15 36.01 0.37 -1.19 16 15 O -0.55 -9.93 17.86 5.56 0.10 -9.83 16 16 C 0.07 0.73 8.23 -8.49 -0.07 0.66 16 17 C -0.23 -5.48 8.46 -38.65 -0.33 -5.81 16 18 C 0.18 4.70 5.66 -104.67 -0.59 4.10 16 19 C -0.42 -11.06 7.97 -37.80 -0.30 -11.37 16 20 H 0.11 3.04 5.76 -52.49 -0.30 2.74 16 21 C 0.07 1.74 5.26 -17.31 -0.09 1.65 16 22 N -0.78 -19.37 11.10 55.56 0.62 -18.76 16 23 Si 0.92 18.97 29.57 -169.99 -5.03 13.95 16 24 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.10 1.92 7.62 -52.48 -0.40 1.52 16 31 H 0.10 1.53 5.90 -52.49 -0.31 1.22 16 32 H 0.40 6.57 8.75 -40.82 -0.36 6.21 16 33 H 0.12 1.29 6.02 -51.93 -0.31 0.98 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.09 0.82 8.12 -51.93 -0.42 0.40 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.12 2.93 6.54 -52.49 -0.34 2.59 16 42 H 0.28 6.41 8.29 -40.82 -0.34 6.07 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -31.73 359.29 -7.97 -39.70 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -5.39 Total: 10.15 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -2.06 Total: 1.63 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: -0.36 Total: -39.19 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.56 Total: -31.65 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.73 -7.97 -39.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171080177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.750 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.16 seconds