Wall clock time and date at job start Tue Mar 31 2020 13:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34836 * 117.00344 * 2 1 4 4 O 1.21574 * 119.99925 * 359.97438 * 3 2 1 5 5 C 1.47009 * 120.00418 * 179.97438 * 3 2 1 6 6 C 1.39575 * 120.48374 * 355.95087 * 5 3 2 7 7 C 1.37800 * 120.14210 * 179.97438 * 6 5 3 8 8 C 1.39423 * 121.19824 * 359.97438 * 7 6 5 9 9 N 1.39149 * 119.49843 * 179.97438 * 8 7 6 10 10 C 1.46490 * 120.00153 * 0.02562 * 9 8 7 11 11 C 1.53504 * 114.20746 * 154.99952 * 10 9 8 12 12 N 1.47073 * 87.98525 * 87.51780 * 11 10 9 13 13 C 1.34772 * 136.05456 * 207.09002 * 12 11 10 14 14 C 1.50703 * 119.99827 * 179.97438 * 13 12 11 15 15 O 1.21279 * 120.00540 * 0.02562 * 13 12 11 16 16 C 1.47069 * 87.88565 * 27.12118 * 12 11 10 17 17 C 1.38439 * 120.99574 * 0.23175 * 8 7 6 18 18 C 1.40509 * 119.76818 * 359.51671 * 17 8 7 19 19 C 1.40945 * 120.56336 * 180.22878 * 18 17 8 20 20 H 1.07997 * 119.99896 * 213.18832 * 19 18 17 21 21 C 1.40247 * 119.99762 * 33.19188 * 19 18 17 22 22 N 1.30629 * 120.00630 * 9.35356 * 21 19 18 23 23 Si 1.86800 * 119.99512 * 189.35084 * 21 19 18 24 24 H 1.48497 * 109.47512 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46994 * 119.99993 * 23 21 19 26 26 H 1.48496 * 109.47332 * 239.99985 * 23 21 19 27 27 H 1.08998 * 109.46748 * 59.99974 * 1 2 3 28 28 H 1.08994 * 109.47909 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46851 * 300.00686 * 1 2 3 30 30 H 1.08004 * 119.93186 * 359.97189 * 6 5 3 31 31 H 1.07999 * 119.40333 * 179.97438 * 7 6 5 32 32 H 0.97000 * 119.99234 * 179.97438 * 9 8 7 33 33 H 1.09000 * 113.41547 * 21.79544 * 10 9 8 34 34 H 1.08991 * 113.46363 * 332.73885 * 11 10 9 35 35 H 1.08995 * 113.47014 * 202.29391 * 11 10 9 36 36 H 1.09008 * 109.46414 * 60.00433 * 14 13 12 37 37 H 1.08998 * 109.47137 * 179.97438 * 14 13 12 38 38 H 1.08996 * 109.47700 * 300.00107 * 14 13 12 39 39 H 1.09000 * 113.46698 * 87.66185 * 16 12 11 40 40 H 1.08995 * 113.46723 * 218.04445 * 16 12 11 41 41 H 1.07995 * 120.11525 * 179.72189 * 17 8 7 42 42 H 0.96996 * 120.00627 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4021 2.2210 -0.0005 5 6 3.5322 1.2783 0.0006 6 6 4.3021 0.1172 0.0860 7 6 5.6778 0.1975 0.0855 8 6 6.3294 1.4271 -0.0001 9 7 7.7203 1.4671 0.0028 10 6 8.4887 0.2232 0.0947 11 6 9.9016 0.3109 -0.4989 12 7 10.3666 0.7884 0.8121 13 6 11.3744 1.5622 1.2614 14 6 11.5196 1.8284 2.7376 15 8 12.1639 2.0452 0.4776 16 6 9.2484 0.0491 1.4172 17 6 5.6135 2.6091 -0.0826 18 6 4.2089 2.5749 -0.0908 19 6 3.4634 3.7678 -0.1791 20 1 2.5097 3.8468 0.3215 21 6 3.9601 4.8521 -0.9170 22 7 5.0170 4.7007 -1.6696 23 14 3.1100 6.5128 -0.8239 24 1 1.9448 6.4219 0.0922 25 1 4.0638 7.5291 -0.3113 26 1 2.6459 6.9080 -2.1780 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 3.8186 -0.8462 0.1528 31 1 6.2618 -0.7085 0.1525 32 1 8.1811 2.3186 -0.0568 33 1 7.9267 -0.6571 -0.2171 34 1 9.9946 1.0550 -1.2898 35 1 10.3152 -0.6576 -0.7797 36 1 11.6571 0.8845 3.2651 37 1 12.3850 2.4688 2.9079 38 1 10.6220 2.3240 3.1075 39 1 9.4881 -0.9892 1.6466 40 1 8.7868 0.5702 2.2558 41 1 6.1329 3.5540 -0.1438 42 1 5.3608 5.4506 -2.1797 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171080177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:52 Heat of formation + Delta-G solvation = -74.449326 kcal Electronic energy + Delta-G solvation = -26125.821287 eV Core-core repulsion = 22264.414196 eV Total energy + Delta-G solvation = -3861.407091 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 5.18 seconds Orbital eigenvalues (eV) -41.53006 -40.86838 -39.50970 -38.62781 -36.97366 -35.87199 -34.70794 -31.96403 -31.50086 -30.19747 -28.90641 -27.88505 -27.21730 -26.83615 -23.79360 -23.48056 -22.10309 -21.10402 -19.92612 -19.10152 -18.33365 -18.12694 -17.70737 -17.36166 -16.97786 -16.90716 -16.72479 -16.43002 -16.16336 -15.22994 -14.88792 -14.66336 -14.45108 -14.20186 -14.09600 -13.96883 -13.92497 -13.53655 -13.39107 -13.10326 -13.03113 -12.91568 -12.88715 -12.73176 -12.55790 -12.47772 -12.05502 -11.88561 -11.50339 -11.36693 -11.20336 -10.93547 -10.65705 -10.48066 -9.78189 -9.25560 -8.73494 -8.04428 -6.43480 0.52375 1.08545 1.33664 1.48627 1.52249 1.57130 1.88946 2.18204 2.19646 2.26649 2.57567 2.79085 3.39344 3.62810 3.79556 4.00604 4.24011 4.34440 4.43561 4.45555 4.49668 4.50832 4.54666 4.58628 4.63756 4.70624 4.77022 4.82824 4.87329 4.89059 5.06408 5.12028 5.16429 5.30883 5.45819 5.69505 5.82973 5.94710 6.10838 6.13184 6.55889 6.71112 6.82432 6.87600 6.90712 7.07332 7.08868 7.40206 8.25104 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012097 B = 0.003762 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.990766 B = 7440.908137 C = 9277.726836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.501 3.499 4 O -0.560 6.560 5 C -0.320 4.320 6 C 0.007 3.993 7 C -0.290 4.290 8 C 0.258 3.742 9 N -0.724 5.724 10 C 0.118 3.882 11 C 0.087 3.913 12 N -0.650 5.650 13 C 0.526 3.474 14 C -0.158 4.158 15 O -0.609 6.609 16 C 0.088 3.912 17 C -0.262 4.262 18 C 0.158 3.842 19 C -0.460 4.460 20 H 0.086 0.914 21 C 0.036 3.964 22 N -0.808 5.808 23 Si 0.976 3.024 24 H -0.267 1.267 25 H -0.256 1.256 26 H -0.266 1.266 27 H 0.048 0.952 28 H 0.134 0.866 29 H 0.052 0.948 30 H 0.132 0.868 31 H 0.145 0.855 32 H 0.391 0.609 33 H 0.141 0.859 34 H 0.057 0.943 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.133 0.867 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.259 -11.913 6.443 14.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.290 6.290 3 C 0.354 3.646 4 O -0.455 6.455 5 C -0.323 4.323 6 C -0.012 4.012 7 C -0.312 4.312 8 C 0.155 3.845 9 N -0.352 5.352 10 C 0.011 3.989 11 C -0.037 4.037 12 N -0.385 5.385 13 C 0.319 3.681 14 C -0.217 4.217 15 O -0.491 6.491 16 C -0.035 4.035 17 C -0.287 4.287 18 C 0.153 3.847 19 C -0.489 4.489 20 H 0.104 0.896 21 C -0.181 4.181 22 N -0.434 5.434 23 Si 0.797 3.203 24 H -0.191 1.191 25 H -0.181 1.181 26 H -0.191 1.191 27 H 0.066 0.934 28 H 0.153 0.847 29 H 0.070 0.930 30 H 0.150 0.850 31 H 0.162 0.838 32 H 0.224 0.776 33 H 0.158 0.842 34 H 0.075 0.925 35 H 0.145 0.855 36 H 0.132 0.868 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.151 0.849 40 H 0.101 0.899 41 H 0.116 0.884 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.830 -11.335 5.975 14.520 hybrid contribution -0.445 1.701 -0.406 1.804 sum 6.385 -9.634 5.569 12.830 Atomic orbital electron populations 1.23342 0.76226 1.04955 1.01487 1.86531 1.23844 1.33032 1.85642 1.21397 0.89832 0.80590 0.72736 1.90686 1.67733 1.36620 1.50426 1.19960 0.87521 0.95012 1.29852 1.20937 0.93608 0.95975 0.90654 1.20274 0.93683 0.95647 1.21560 1.17753 0.82964 0.93734 0.90003 1.44181 1.02069 1.07562 1.81348 1.22258 0.90925 0.89457 0.96286 1.23625 0.91686 1.01072 0.87297 1.49864 1.28524 1.48099 1.11985 1.21162 0.77686 0.76711 0.92572 1.21844 1.05235 1.05499 0.89144 1.90693 1.44408 1.53767 1.60271 1.23942 0.82792 0.98596 0.98181 1.20476 0.93086 0.95831 1.19295 1.18468 0.91740 0.90518 0.83936 1.20311 1.05290 0.96863 1.26386 0.89649 1.26788 0.94789 1.03661 0.92830 1.69775 1.20235 1.33988 1.19358 0.85243 0.79155 0.76675 0.79197 1.19135 1.18060 1.19055 0.93353 0.84747 0.92958 0.84976 0.83758 0.77581 0.84217 0.92476 0.85522 0.86848 0.89124 0.88448 0.84916 0.89858 0.88402 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 10.57 113.37 1.20 2.19 16 2 O -0.37 -14.59 9.84 -57.49 -0.57 -15.15 16 3 C 0.50 24.36 7.86 70.12 0.55 24.91 16 4 O -0.56 -30.47 13.47 19.59 0.26 -30.21 16 5 C -0.32 -15.66 6.07 -18.49 -0.11 -15.77 16 6 C 0.01 0.28 9.60 22.49 0.22 0.50 16 7 C -0.29 -10.07 9.21 22.45 0.21 -9.86 16 8 C 0.26 10.01 6.63 38.31 0.25 10.26 16 9 N -0.72 -21.87 5.54 -318.76 -1.77 -23.64 16 10 C 0.12 2.33 4.40 45.47 0.20 2.53 16 11 C 0.09 1.71 8.38 83.19 0.70 2.41 16 12 N -0.65 -13.81 3.69 -858.21 -3.17 -16.98 16 13 C 0.53 13.56 8.19 87.66 0.72 14.28 16 14 C -0.16 -2.58 10.15 71.24 0.72 -1.85 16 15 O -0.61 -21.97 17.86 -3.03 -0.05 -22.02 16 16 C 0.09 1.31 8.23 83.19 0.68 2.00 16 17 C -0.26 -12.81 8.46 22.87 0.19 -12.62 16 18 C 0.16 8.50 5.66 -19.90 -0.11 8.39 16 19 C -0.46 -26.07 7.97 23.42 0.19 -25.89 16 20 H 0.09 5.12 5.76 -2.91 -0.02 5.10 16 21 C 0.04 1.87 5.26 85.36 0.45 2.32 16 22 N -0.81 -42.25 11.10 21.87 0.24 -42.01 16 23 Si 0.98 40.89 29.57 68.60 2.03 42.92 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 26 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.13 4.40 7.62 -2.91 -0.02 4.38 16 31 H 0.14 3.63 5.90 -2.91 -0.02 3.61 16 32 H 0.39 12.84 8.75 -92.71 -0.81 12.03 16 33 H 0.14 2.21 6.02 -2.39 -0.01 2.19 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.09 1.49 8.12 -2.39 -0.02 1.47 16 38 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.10 5.11 6.54 -2.91 -0.02 5.09 16 42 H 0.29 13.67 8.29 -92.71 -0.77 12.90 16 Total: -1.00 -76.25 359.29 3.29 -72.95 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.26 Total: 30.33 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 6.05 Total: 3.80 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -4.69 Total: -82.63 kcal Atomic # 8 Polarization: -67.02 SS G_CDS: -0.36 Total: -67.38 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -76.25 3.29 -72.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171080177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.498 kcal (2) G-P(sol) polarization free energy of solvation -76.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.18 seconds