Wall clock time and date at job start Tue Mar 31 2020 13:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50712 * 1 3 3 O 1.21270 * 119.99884 * 2 1 4 4 N 1.34779 * 119.99738 * 179.97438 * 2 1 3 5 5 C 1.39308 * 119.99860 * 185.13320 * 4 2 1 6 6 C 1.39223 * 119.90016 * 33.55921 * 5 4 2 7 7 C 1.37083 * 120.10195 * 180.02562 * 6 5 4 8 8 C 1.40056 * 119.89546 * 359.97438 * 7 6 5 9 9 C 1.46848 * 120.09662 * 180.02562 * 8 7 6 10 10 O 1.21293 * 120.00135 * 0.02562 * 9 8 7 11 11 C 1.50702 * 119.99871 * 180.02562 * 9 8 7 12 12 C 1.53000 * 109.47218 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47484 * 179.97438 * 12 11 9 14 14 O 1.21291 * 119.99749 * 0.02562 * 13 12 11 15 15 N 1.34771 * 120.00112 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00272 * 0.02562 * 15 13 12 17 17 C 1.37099 * 119.99871 * 180.02562 * 15 13 12 18 18 H 1.08001 * 119.99920 * 22.85091 * 17 15 13 19 19 C 1.38952 * 120.00060 * 202.84439 * 17 15 13 20 20 N 1.31412 * 119.99872 * 12.73270 * 19 17 15 21 21 Si 1.86799 * 120.00032 * 192.72774 * 19 17 15 22 22 H 1.48495 * 109.47226 * 60.00486 * 21 19 17 23 23 H 1.48505 * 109.47119 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47135 * 300.00077 * 21 19 17 25 25 C 1.40054 * 119.80580 * 0.27977 * 8 7 6 26 26 C 1.37089 * 119.89087 * 359.48505 * 25 8 7 27 27 H 1.08996 * 109.47047 * 240.00159 * 1 2 3 28 28 H 1.08994 * 109.46528 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46632 * 119.99893 * 1 2 3 30 30 H 0.97004 * 119.99639 * 5.13274 * 4 2 1 31 31 H 1.07994 * 119.94903 * 0.02562 * 6 5 4 32 32 H 1.07997 * 120.05321 * 179.97438 * 7 6 5 33 33 H 1.09008 * 109.46991 * 299.99612 * 11 9 8 34 34 H 1.08997 * 109.47388 * 60.00004 * 11 9 8 35 35 H 1.08999 * 109.46920 * 299.99928 * 12 11 9 36 36 H 1.09004 * 109.47212 * 59.99550 * 12 11 9 37 37 H 1.09005 * 109.46858 * 89.68878 * 16 15 13 38 38 H 1.08997 * 109.47738 * 209.68603 * 16 15 13 39 39 H 1.09001 * 109.47333 * 329.69000 * 16 15 13 40 40 H 0.97001 * 119.99937 * 179.97438 * 20 19 17 41 41 H 1.07991 * 120.05537 * 179.70029 * 25 8 7 42 42 H 1.08006 * 119.94459 * 180.23034 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1810 -1.1673 0.0005 5 6 3.5699 -1.1697 0.1085 6 6 4.2084 -0.1956 0.8713 7 6 5.5749 -0.1938 0.9799 8 6 6.3287 -1.1741 0.3225 9 6 7.7928 -1.1766 0.4363 10 8 8.3509 -0.3292 1.1008 11 6 8.6018 -2.2321 -0.2726 12 6 10.0892 -2.0085 0.0078 13 6 10.8982 -3.0644 -0.7005 14 8 10.3401 -3.9121 -1.3647 15 7 12.2420 -3.0662 -0.5968 16 6 12.9162 -2.0420 0.2049 17 6 12.9780 -4.0264 -1.2416 18 1 12.5656 -4.5379 -2.0988 19 6 14.2546 -4.3415 -0.7924 20 7 14.6624 -3.9135 0.3812 21 14 15.3909 -5.3737 -1.8567 22 1 15.6264 -4.6790 -3.1479 23 1 16.6854 -5.5677 -1.1553 24 1 14.7643 -6.6954 -2.1128 25 6 5.6825 -2.1488 -0.4482 26 6 4.3152 -2.1457 -0.5472 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3632 1.0276 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 1.6988 -2.0056 -0.0743 31 1 3.6262 0.5596 1.3782 32 1 6.0694 0.5624 1.5715 33 1 8.3080 -3.2181 0.0878 34 1 8.4212 -2.1687 -1.3456 35 1 10.3827 -1.0227 -0.3528 36 1 10.2702 -2.0716 1.0808 37 1 13.0137 -2.3913 1.2329 38 1 13.9060 -1.8498 -0.2090 39 1 12.3304 -1.1230 0.1875 40 1 15.5534 -4.1338 0.6949 41 1 6.2601 -2.9036 -0.9608 42 1 3.8157 -2.8992 -1.1382 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182065586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:26 Heat of formation + Delta-G solvation = -76.103733 kcal Electronic energy + Delta-G solvation = -25087.089619 eV Core-core repulsion = 21225.610788 eV Total energy + Delta-G solvation = -3861.478831 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.99282 -39.76064 -38.45301 -37.92597 -35.17616 -34.69926 -32.54044 -31.60995 -31.26488 -31.11897 -29.29550 -26.57815 -25.58429 -24.17592 -23.51437 -22.44530 -21.05456 -19.70189 -18.58392 -18.28585 -17.37473 -16.96954 -16.68374 -16.02310 -15.85580 -15.45837 -15.12982 -14.76305 -14.51460 -14.23408 -14.07542 -13.93193 -13.72256 -13.58119 -13.36016 -13.10239 -12.82343 -12.70509 -12.46627 -12.23920 -11.60994 -11.50959 -11.37488 -11.23592 -11.10363 -10.78117 -10.74389 -10.64343 -10.38366 -10.36529 -10.16327 -9.51961 -9.24918 -8.96847 -8.45162 -8.34267 -7.62481 -6.27055 -3.83170 0.46398 1.20962 1.97183 2.49011 2.60300 3.21424 3.26747 3.30641 3.66511 3.95290 4.04504 4.16758 4.22843 4.57445 4.67660 4.69993 4.77790 4.99470 5.10632 5.12557 5.17052 5.18582 5.26610 5.32220 5.58552 5.63010 5.78204 5.89640 5.93752 6.00676 6.13667 6.15245 6.31827 6.37235 6.46876 6.53033 6.67643 6.85851 6.94809 7.28706 7.58473 7.60537 7.67687 8.18176 8.53299 9.23152 9.48565 10.04144 10.77122 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.040233 B = 0.002038 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.779427 B =13737.487892 C =14284.685671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.520 6.520 4 N -0.675 5.675 5 C 0.170 3.830 6 C -0.138 4.138 7 C -0.042 4.042 8 C -0.181 4.181 9 C 0.396 3.604 10 O -0.456 6.456 11 C -0.144 4.144 12 C -0.120 4.120 13 C 0.445 3.555 14 O -0.596 6.596 15 N -0.446 5.446 16 C 0.111 3.889 17 C -0.307 4.307 18 H 0.098 0.902 19 C 0.029 3.971 20 N -0.883 5.883 21 Si 0.927 3.073 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.048 4.048 26 C -0.160 4.160 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.413 0.587 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.029 0.971 40 H 0.267 0.733 41 H 0.143 0.857 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.086 5.433 1.380 26.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.297 3.703 3 O -0.394 6.394 4 N -0.320 5.320 5 C 0.075 3.925 6 C -0.158 4.158 7 C -0.061 4.061 8 C -0.182 4.182 9 C 0.274 3.726 10 O -0.331 6.331 11 C -0.181 4.181 12 C -0.161 4.161 13 C 0.234 3.766 14 O -0.482 6.482 15 N -0.165 5.165 16 C -0.032 4.032 17 C -0.435 4.435 18 H 0.115 0.885 19 C -0.174 4.174 20 N -0.522 5.522 21 Si 0.754 3.246 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.067 4.067 26 C -0.180 4.180 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.250 0.750 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.161 0.839 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -25.491 6.250 1.541 26.291 hybrid contribution 0.403 -0.969 -0.407 1.125 sum -25.087 5.282 1.134 25.662 Atomic orbital electron populations 1.21940 0.90439 1.06180 1.04696 1.21087 0.91031 0.83089 0.75107 1.90780 1.70594 1.31173 1.46876 1.43561 1.05374 1.10193 1.72909 1.17993 0.82711 0.96615 0.95162 1.20943 0.94732 1.00133 1.00002 1.21203 0.92974 0.96296 0.95600 1.20637 0.95579 0.98797 1.03231 1.22614 0.88022 0.84130 0.77842 1.90510 1.73756 1.35637 1.33231 1.21718 0.94969 0.99015 1.02430 1.21322 0.93233 0.99600 1.01903 1.20042 0.82776 0.87690 0.86126 1.90485 1.70442 1.41727 1.45578 1.43587 1.03964 1.25460 1.43445 1.21502 0.97144 0.88101 0.96503 1.19606 0.96688 1.16273 1.10930 0.88466 1.25348 0.98512 0.97774 0.95763 1.70004 1.19572 1.45824 1.16798 0.85994 0.78890 0.80139 0.79616 1.19966 1.20994 1.19840 1.21278 0.93849 0.96599 0.94926 1.20744 0.94154 1.01031 1.02094 0.88872 0.88440 0.88966 0.75033 0.84532 0.84539 0.87760 0.87845 0.90068 0.89855 0.92649 0.91179 0.95258 0.92245 0.83921 0.85022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.49 10.32 36.01 0.37 -0.12 16 2 C 0.51 3.81 7.67 -10.98 -0.08 3.72 16 3 O -0.52 -6.38 14.75 5.57 0.08 -6.30 16 4 N -0.67 -4.28 5.31 -9.85 -0.05 -4.33 16 5 C 0.17 1.62 6.27 -83.73 -0.53 1.10 16 6 C -0.14 -1.57 8.60 -39.63 -0.34 -1.92 16 7 C -0.04 -0.52 9.57 -39.32 -0.38 -0.90 16 8 C -0.18 -2.32 5.87 -105.05 -0.62 -2.93 16 9 C 0.40 5.95 7.11 -30.83 -0.22 5.73 16 10 O -0.46 -7.99 15.96 5.55 0.09 -7.90 16 11 C -0.14 -2.29 3.59 -27.88 -0.10 -2.39 16 12 C -0.12 -2.31 3.55 -27.88 -0.10 -2.41 16 13 C 0.45 10.93 7.63 -10.99 -0.08 10.85 16 14 O -0.60 -16.15 15.68 5.55 0.09 -16.07 16 15 N -0.45 -11.75 3.02 -122.19 -0.37 -12.11 16 16 C 0.11 2.59 8.49 59.85 0.51 3.10 16 17 C -0.31 -8.71 9.27 -14.93 -0.14 -8.85 16 18 H 0.10 2.86 7.42 -52.49 -0.39 2.47 16 19 C 0.03 0.78 5.07 -17.47 -0.09 0.69 16 20 N -0.88 -24.05 10.72 55.50 0.59 -23.45 16 21 Si 0.93 21.04 29.57 -169.99 -5.03 16.01 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 C -0.05 -0.51 9.44 -39.32 -0.37 -0.88 16 26 C -0.16 -1.42 9.92 -39.64 -0.39 -1.81 16 27 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 28 H 0.10 0.33 8.12 -51.93 -0.42 -0.09 16 29 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 30 H 0.41 1.06 8.81 -40.82 -0.36 0.70 16 31 H 0.14 1.59 6.40 -52.49 -0.34 1.26 16 32 H 0.14 1.68 7.64 -52.49 -0.40 1.28 16 33 H 0.10 1.61 8.05 -51.92 -0.42 1.19 16 34 H 0.10 1.58 8.03 -51.93 -0.42 1.17 16 35 H 0.08 1.49 7.36 -51.93 -0.38 1.11 16 36 H 0.08 1.58 8.06 -51.93 -0.42 1.16 16 37 H 0.05 1.33 7.66 -51.93 -0.40 0.93 16 38 H 0.07 1.70 6.95 -51.93 -0.36 1.34 16 39 H 0.03 0.58 6.45 -51.93 -0.34 0.24 16 40 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 41 H 0.14 1.35 7.03 -52.49 -0.37 0.98 16 42 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 LS Contribution 359.35 15.07 5.42 5.42 Total: -1.00 -36.03 359.35 -7.15 -43.18 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.41 Total: 2.56 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -2.56 Total: 2.99 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.17 Total: -39.90 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: 0.26 Total: -30.26 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.03 -7.15 -43.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182065586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.927 kcal (2) G-P(sol) polarization free energy of solvation -36.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds