Wall clock time and date at job start Tue Mar 31 2020 13:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50712 * 1 3 3 O 1.21270 * 119.99884 * 2 1 4 4 N 1.34779 * 119.99738 * 179.97438 * 2 1 3 5 5 C 1.39308 * 119.99860 * 185.13320 * 4 2 1 6 6 C 1.39223 * 119.90016 * 33.55921 * 5 4 2 7 7 C 1.37083 * 120.10195 * 180.02562 * 6 5 4 8 8 C 1.40056 * 119.89546 * 359.97438 * 7 6 5 9 9 C 1.46848 * 120.09662 * 180.02562 * 8 7 6 10 10 O 1.21293 * 120.00135 * 0.02562 * 9 8 7 11 11 C 1.50702 * 119.99871 * 180.02562 * 9 8 7 12 12 C 1.53000 * 109.47218 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47484 * 179.97438 * 12 11 9 14 14 O 1.21291 * 119.99749 * 0.02562 * 13 12 11 15 15 N 1.34771 * 120.00112 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00272 * 0.02562 * 15 13 12 17 17 C 1.37099 * 119.99871 * 180.02562 * 15 13 12 18 18 H 1.08001 * 119.99920 * 22.85091 * 17 15 13 19 19 C 1.38952 * 120.00060 * 202.84439 * 17 15 13 20 20 N 1.31412 * 119.99872 * 12.73270 * 19 17 15 21 21 Si 1.86799 * 120.00032 * 192.72774 * 19 17 15 22 22 H 1.48495 * 109.47226 * 60.00486 * 21 19 17 23 23 H 1.48505 * 109.47119 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47135 * 300.00077 * 21 19 17 25 25 C 1.40054 * 119.80580 * 0.27977 * 8 7 6 26 26 C 1.37089 * 119.89087 * 359.48505 * 25 8 7 27 27 H 1.08996 * 109.47047 * 240.00159 * 1 2 3 28 28 H 1.08994 * 109.46528 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46632 * 119.99893 * 1 2 3 30 30 H 0.97004 * 119.99639 * 5.13274 * 4 2 1 31 31 H 1.07994 * 119.94903 * 0.02562 * 6 5 4 32 32 H 1.07997 * 120.05321 * 179.97438 * 7 6 5 33 33 H 1.09008 * 109.46991 * 299.99612 * 11 9 8 34 34 H 1.08997 * 109.47388 * 60.00004 * 11 9 8 35 35 H 1.08999 * 109.46920 * 299.99928 * 12 11 9 36 36 H 1.09004 * 109.47212 * 59.99550 * 12 11 9 37 37 H 1.09005 * 109.46858 * 89.68878 * 16 15 13 38 38 H 1.08997 * 109.47738 * 209.68603 * 16 15 13 39 39 H 1.09001 * 109.47333 * 329.69000 * 16 15 13 40 40 H 0.97001 * 119.99937 * 179.97438 * 20 19 17 41 41 H 1.07991 * 120.05537 * 179.70029 * 25 8 7 42 42 H 1.08006 * 119.94459 * 180.23034 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1810 -1.1673 0.0005 5 6 3.5699 -1.1697 0.1085 6 6 4.2084 -0.1956 0.8713 7 6 5.5749 -0.1938 0.9799 8 6 6.3287 -1.1741 0.3225 9 6 7.7928 -1.1766 0.4363 10 8 8.3509 -0.3292 1.1008 11 6 8.6018 -2.2321 -0.2726 12 6 10.0892 -2.0085 0.0078 13 6 10.8982 -3.0644 -0.7005 14 8 10.3401 -3.9121 -1.3647 15 7 12.2420 -3.0662 -0.5968 16 6 12.9162 -2.0420 0.2049 17 6 12.9780 -4.0264 -1.2416 18 1 12.5656 -4.5379 -2.0988 19 6 14.2546 -4.3415 -0.7924 20 7 14.6624 -3.9135 0.3812 21 14 15.3909 -5.3737 -1.8567 22 1 15.6264 -4.6790 -3.1479 23 1 16.6854 -5.5677 -1.1553 24 1 14.7643 -6.6954 -2.1128 25 6 5.6825 -2.1488 -0.4482 26 6 4.3152 -2.1457 -0.5472 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3632 1.0276 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 1.6988 -2.0056 -0.0743 31 1 3.6262 0.5596 1.3782 32 1 6.0694 0.5624 1.5715 33 1 8.3080 -3.2181 0.0878 34 1 8.4212 -2.1687 -1.3456 35 1 10.3827 -1.0227 -0.3528 36 1 10.2702 -2.0716 1.0808 37 1 13.0137 -2.3913 1.2329 38 1 13.9060 -1.8498 -0.2090 39 1 12.3304 -1.1230 0.1875 40 1 15.5534 -4.1338 0.6949 41 1 6.2601 -2.9036 -0.9608 42 1 3.8157 -2.8992 -1.1382 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182065586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:26 Heat of formation + Delta-G solvation = -100.024321 kcal Electronic energy + Delta-G solvation = -25088.126894 eV Core-core repulsion = 21225.610788 eV Total energy + Delta-G solvation = -3862.516106 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.73665 -40.91536 -40.14540 -38.98376 -36.70663 -35.91807 -34.06009 -33.45335 -32.10706 -31.95171 -29.97402 -28.40311 -27.20966 -25.75602 -24.49982 -23.48645 -21.73677 -20.93265 -20.25312 -19.03693 -18.87322 -18.19418 -17.96901 -17.40925 -16.93972 -16.70774 -16.49005 -15.98011 -15.82323 -15.68782 -15.47804 -15.00833 -14.79330 -14.51847 -14.34663 -14.10991 -13.86012 -13.78084 -13.40809 -13.27593 -13.22920 -13.12880 -13.02404 -12.85012 -12.59983 -12.34084 -12.22436 -12.13795 -12.02364 -11.51077 -11.09848 -11.00207 -10.70113 -10.34244 -10.08294 -9.68359 -9.24485 -8.32306 -5.97641 -0.46122 0.38089 1.19681 1.40130 1.41791 1.52824 1.65461 2.03037 2.04323 2.28342 2.78755 2.82669 3.10322 3.29500 3.67232 3.79241 3.91223 3.93284 4.13265 4.19048 4.27779 4.31364 4.45373 4.49782 4.55796 4.59370 4.67124 4.78649 4.91401 4.96168 5.04320 5.05984 5.08797 5.13870 5.20846 5.33817 5.35573 5.41397 5.45510 5.87583 6.09992 6.36893 6.47708 6.51841 7.06983 7.16525 7.47998 8.03199 8.70303 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.040233 B = 0.002038 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.779427 B =13737.487892 C =14284.685671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.503 3.497 3 O -0.574 6.574 4 N -0.660 5.660 5 C 0.176 3.824 6 C -0.152 4.152 7 C -0.051 4.051 8 C -0.202 4.202 9 C 0.406 3.594 10 O -0.489 6.489 11 C -0.137 4.137 12 C -0.110 4.110 13 C 0.439 3.561 14 O -0.626 6.626 15 N -0.465 5.465 16 C 0.122 3.878 17 C -0.345 4.345 18 H 0.076 0.924 19 C -0.007 4.007 20 N -0.899 5.899 21 Si 0.992 3.008 22 H -0.267 1.267 23 H -0.272 1.272 24 H -0.274 1.274 25 C -0.045 4.045 26 C -0.151 4.151 27 H 0.118 0.882 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.435 0.565 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.273 0.727 41 H 0.156 0.844 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.102 4.414 0.663 28.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.294 3.706 3 O -0.453 6.453 4 N -0.307 5.307 5 C 0.080 3.920 6 C -0.172 4.172 7 C -0.070 4.070 8 C -0.204 4.204 9 C 0.287 3.713 10 O -0.368 6.368 11 C -0.175 4.175 12 C -0.150 4.150 13 C 0.229 3.771 14 O -0.514 6.514 15 N -0.184 5.184 16 C -0.021 4.021 17 C -0.473 4.473 18 H 0.094 0.906 19 C -0.208 4.208 20 N -0.538 5.538 21 Si 0.816 3.184 22 H -0.192 1.192 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.064 4.064 26 C -0.171 4.171 27 H 0.137 0.863 28 H 0.109 0.891 29 H 0.138 0.862 30 H 0.275 0.725 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.173 0.827 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -27.548 5.207 0.834 28.048 hybrid contribution 0.901 -0.665 -0.176 1.134 sum -26.647 4.542 0.658 27.039 Atomic orbital electron populations 1.21974 0.86427 1.06638 1.07147 1.22020 0.92852 0.82296 0.73404 1.90768 1.71965 1.33151 1.49392 1.43560 1.04104 1.11235 1.71839 1.18154 0.84393 0.95670 0.93772 1.20938 0.94306 1.00934 1.01023 1.21164 0.93561 0.96344 0.95958 1.20447 0.94087 1.00435 1.05386 1.22611 0.89025 0.82991 0.76693 1.90500 1.74502 1.36860 1.34892 1.21677 0.92874 0.99772 1.03173 1.21239 0.94503 0.98011 1.01208 1.20904 0.82596 0.88208 0.85389 1.90447 1.70974 1.43203 1.46784 1.43870 1.04824 1.25850 1.43861 1.21411 0.96861 0.88704 0.95106 1.19631 0.98115 1.17975 1.11567 0.90608 1.26161 0.99207 0.98587 0.96863 1.70086 1.20049 1.46081 1.17598 0.85013 0.77013 0.78245 0.78162 1.19213 1.19645 1.19922 1.21484 0.94864 0.95942 0.94084 1.21082 0.93423 1.01164 1.01405 0.86344 0.89077 0.86248 0.72474 0.85360 0.85566 0.87173 0.87045 0.89033 0.89557 0.93821 0.92657 0.91883 0.91745 0.82679 0.81281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.43 10.32 71.24 0.74 0.31 16 2 C 0.50 6.61 7.67 87.66 0.67 7.28 16 3 O -0.57 -14.02 14.75 -3.00 -0.04 -14.06 16 4 N -0.66 -6.56 5.31 -303.45 -1.61 -8.17 16 5 C 0.18 3.02 6.27 38.42 0.24 3.26 16 6 C -0.15 -3.46 8.60 22.23 0.19 -3.26 16 7 C -0.05 -1.31 9.57 22.44 0.21 -1.09 16 8 C -0.20 -5.10 5.87 -20.14 -0.12 -5.22 16 9 C 0.41 12.18 7.11 27.94 0.20 12.38 16 10 O -0.49 -17.42 15.96 -3.07 -0.05 -17.47 16 11 C -0.14 -4.30 3.59 29.85 0.11 -4.19 16 12 C -0.11 -4.17 3.55 29.85 0.11 -4.07 16 13 C 0.44 21.77 7.63 87.66 0.67 22.44 16 14 O -0.63 -34.38 15.68 -3.06 -0.05 -34.43 16 15 N -0.47 -24.88 3.02 -658.90 -1.99 -26.87 16 16 C 0.12 5.74 8.49 127.77 1.09 6.82 16 17 C -0.34 -19.97 9.27 84.04 0.78 -19.19 16 18 H 0.08 4.61 7.42 -2.91 -0.02 4.58 16 19 C -0.01 -0.37 5.07 84.93 0.43 0.06 16 20 N -0.90 -49.08 10.72 21.66 0.23 -48.85 16 21 Si 0.99 43.04 29.57 68.60 2.03 45.07 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 C -0.05 -0.87 9.44 22.44 0.21 -0.66 16 26 C -0.15 -2.22 9.92 22.23 0.22 -2.00 16 27 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 28 H 0.09 0.43 8.12 -2.39 -0.02 0.41 16 29 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 30 H 0.43 0.49 8.81 -92.71 -0.82 -0.32 16 31 H 0.13 3.11 6.40 -2.91 -0.02 3.09 16 32 H 0.13 3.34 7.64 -2.91 -0.02 3.32 16 33 H 0.11 3.32 8.05 -2.38 -0.02 3.30 16 34 H 0.11 3.32 8.03 -2.39 -0.02 3.30 16 35 H 0.09 3.30 7.36 -2.39 -0.02 3.28 16 36 H 0.09 3.25 8.06 -2.39 -0.02 3.23 16 37 H 0.04 2.12 7.66 -2.38 -0.02 2.10 16 38 H 0.05 2.71 6.95 -2.39 -0.02 2.70 16 39 H 0.06 2.47 6.45 -2.39 -0.02 2.45 16 40 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 41 H 0.16 2.58 7.03 -2.92 -0.02 2.56 16 42 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -80.70 359.35 4.51 -76.19 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.24 Total: 15.72 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 5.74 Total: 12.86 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -3.37 Total: -83.88 kcal Atomic # 8 Polarization: -65.82 SS G_CDS: -0.14 Total: -65.96 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -80.70 4.51 -76.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182065586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.831 kcal (2) G-P(sol) polarization free energy of solvation -80.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds