Wall clock time and date at job start Tue Mar 31 2020 13:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.46966 * 2 1 4 4 C 1.34711 * 116.99850 * 180.02562 * 3 2 1 5 5 O 1.21471 * 120.00523 * 0.02562 * 4 3 2 6 6 C 1.47748 * 120.00203 * 180.02562 * 4 3 2 7 7 C 1.39669 * 120.11175 * 0.02562 * 6 4 3 8 8 C 1.37963 * 119.98731 * 179.97438 * 7 6 4 9 9 C 1.38266 * 120.22652 * 0.02562 * 8 7 6 10 10 C 1.38946 * 120.23579 * 0.02562 * 9 8 7 11 11 N 1.39979 * 119.99443 * 179.97438 * 10 9 8 12 12 C 1.34781 * 119.99753 * 146.78073 * 11 10 9 13 13 O 1.21583 * 119.99845 * 354.68489 * 12 11 10 14 14 N 1.34773 * 119.99901 * 174.68298 * 12 11 10 15 15 C 1.47580 * 134.49227 * 179.97438 * 14 12 11 16 16 C 1.53949 * 86.11568 * 204.64058 * 15 14 12 17 17 C 1.50703 * 113.74173 * 221.94155 * 16 15 14 18 18 H 1.08003 * 120.00002 * 358.07510 * 17 16 15 19 19 C 1.37877 * 120.00315 * 178.07949 * 17 16 15 20 20 N 1.31518 * 119.99651 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00280 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47484 * 89.99691 * 21 19 17 23 23 H 1.48502 * 109.47423 * 209.99648 * 21 19 17 24 24 H 1.48507 * 109.47308 * 329.99860 * 21 19 17 25 25 C 1.47938 * 134.50215 * 0.02562 * 14 12 11 26 26 C 1.38615 * 120.00549 * 0.23507 * 10 9 8 27 27 H 1.08998 * 109.46610 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46465 * 299.99154 * 1 2 3 29 29 H 1.08991 * 109.47075 * 59.99347 * 1 2 3 30 30 H 1.09003 * 109.46961 * 240.00919 * 2 1 3 31 31 H 1.08993 * 109.47583 * 120.00603 * 2 1 3 32 32 H 1.07998 * 120.00576 * 0.02562 * 7 6 4 33 33 H 1.07996 * 119.88823 * 179.97438 * 8 7 6 34 34 H 1.07996 * 119.87976 * 179.97438 * 9 8 7 35 35 H 0.97003 * 120.00295 * 326.77272 * 11 10 9 36 36 H 1.08997 * 113.77047 * 90.34191 * 15 14 12 37 37 H 1.08995 * 113.77281 * 318.94169 * 15 14 12 38 38 H 1.08996 * 113.74256 * 90.73922 * 16 15 14 39 39 H 0.96997 * 119.99911 * 180.02562 * 20 19 17 40 40 H 1.08994 * 113.86736 * 41.09398 * 25 14 12 41 41 H 1.08998 * 113.76533 * 269.60344 * 25 14 12 42 42 H 1.08007 * 120.11397 * 179.74308 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5455 -0.0005 5 8 4.0895 0.5822 -0.0015 6 6 3.9142 2.9108 0.0000 7 6 3.0656 4.0201 0.0016 8 6 3.5958 5.2938 0.0026 9 6 4.9662 5.4774 0.0016 10 6 5.8190 4.3804 -0.0011 11 7 7.2056 4.5721 -0.0027 12 6 8.0077 3.6962 0.6344 13 8 7.5233 2.7948 1.2910 14 7 9.3467 3.8195 0.5437 15 6 10.4939 3.0687 1.0900 16 6 11.2915 4.3757 0.9294 17 6 12.6827 4.1745 0.3862 18 1 13.0427 3.1775 0.1792 19 6 13.4961 5.2632 0.1536 20 7 13.0576 6.4774 0.4053 21 14 15.2208 5.0139 -0.5190 22 1 15.1819 5.0393 -2.0033 23 1 16.1055 6.1011 -0.0285 24 1 15.7464 3.7030 -0.0601 25 6 10.2571 4.7621 -0.1427 26 6 5.2969 3.0964 -0.0076 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 1.9947 3.8808 0.0029 33 1 2.9381 6.1504 0.0035 34 1 5.3751 6.4769 0.0020 35 1 7.5893 5.3353 -0.4625 36 1 10.8386 2.2615 0.4438 37 1 10.3626 2.7588 2.1267 38 1 11.2682 5.0153 1.8117 39 1 13.6297 7.2433 0.2413 40 1 9.9369 5.8025 -0.0892 41 1 10.5323 4.4517 -1.1507 42 1 5.9582 2.2425 -0.0139 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188638238.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:29 Heat of formation + Delta-G solvation = -51.785333 kcal Electronic energy + Delta-G solvation = -25436.170415 eV Core-core repulsion = 21575.746108 eV Total energy + Delta-G solvation = -3860.424306 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.79352 -40.13028 -38.76030 -37.19600 -36.64661 -34.51556 -32.73272 -32.14982 -31.17259 -30.25177 -28.37143 -25.25842 -25.15453 -25.03646 -23.01039 -22.70203 -21.08363 -20.59892 -19.02291 -18.38521 -17.43717 -17.12944 -16.70543 -16.63127 -16.23864 -15.84105 -15.28336 -14.96558 -14.63397 -14.37649 -14.24514 -13.98816 -13.63172 -13.43949 -13.06318 -12.87210 -12.67239 -12.21222 -12.16962 -12.01975 -11.95002 -11.65319 -11.59022 -11.34345 -11.03825 -10.82208 -10.74938 -10.62796 -10.48592 -10.32830 -9.85979 -9.37304 -9.18319 -9.07535 -8.64517 -8.26339 -7.80225 -6.23062 -4.28546 0.60484 1.27414 2.41874 2.44372 2.85180 3.20970 3.29028 3.32283 3.45735 3.83903 4.19057 4.31544 4.46879 4.64295 4.69725 4.74490 4.98141 4.99950 5.05991 5.08434 5.24283 5.33506 5.46144 5.47121 5.63831 5.72838 5.94332 6.06251 6.13327 6.15103 6.21764 6.23977 6.32236 6.34486 6.40789 6.43605 6.54738 6.66903 6.95419 7.47093 7.52234 7.66080 7.74913 8.11346 8.51069 8.75051 8.91537 9.38665 10.86619 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028213 B = 0.002325 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.226488 B =12042.208561 C =12776.909752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.355 6.355 4 C 0.510 3.490 5 O -0.499 6.499 6 C -0.109 4.109 7 C -0.090 4.090 8 C -0.111 4.111 9 C -0.119 4.119 10 C 0.173 3.827 11 N -0.689 5.689 12 C 0.715 3.285 13 O -0.589 6.589 14 N -0.656 5.656 15 C 0.125 3.875 16 C 0.035 3.965 17 C -0.519 4.519 18 H 0.064 0.936 19 C 0.067 3.933 20 N -0.887 5.887 21 Si 0.896 3.104 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 C 0.104 3.896 26 C -0.059 4.059 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.409 0.591 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.264 0.736 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.165 -2.605 -3.280 22.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.273 6.273 4 C 0.355 3.645 5 O -0.387 6.387 6 C -0.111 4.111 7 C -0.110 4.110 8 C -0.130 4.130 9 C -0.140 4.140 10 C 0.076 3.924 11 N -0.336 5.336 12 C 0.419 3.581 13 O -0.468 6.468 14 N -0.393 5.393 15 C 0.003 3.997 16 C 0.016 3.984 17 C -0.557 4.557 18 H 0.082 0.918 19 C -0.136 4.136 20 N -0.524 5.524 21 Si 0.724 3.276 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.018 4.018 26 C -0.080 4.080 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.245 0.755 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -22.339 -3.435 -2.784 22.773 hybrid contribution 1.149 0.287 -0.674 1.363 sum -21.190 -3.148 -3.458 21.700 Atomic orbital electron populations 1.21802 0.92536 1.02987 1.03528 1.23041 0.95297 0.80086 1.02819 1.86524 1.23875 1.32357 1.84516 1.21170 0.80468 0.89972 0.72911 1.90868 1.60286 1.42409 1.45126 1.18872 0.93343 0.89969 1.08887 1.21326 0.99970 0.91522 0.98137 1.20874 0.94287 0.97077 1.00750 1.21192 0.93431 0.98061 1.01318 1.17342 0.82651 0.93107 0.99290 1.42679 1.03710 1.30232 1.56953 1.15628 0.80731 0.81650 0.80085 1.90902 1.73976 1.35643 1.46319 1.49772 1.01133 1.34930 1.53438 1.23442 0.80450 0.98079 0.97718 1.20484 0.92593 0.90509 0.94848 1.20969 0.97512 0.93355 1.43891 0.91779 1.25024 0.98505 0.95153 0.94934 1.69944 1.37094 0.98018 1.47333 0.86523 0.83872 0.78062 0.79162 1.20544 1.21140 1.19675 1.23782 0.87306 0.91773 0.98967 1.21334 0.93555 0.97709 0.95409 0.90210 0.91420 0.91456 0.91143 0.91089 0.84621 0.84817 0.84945 0.75477 0.90734 0.91897 0.91733 0.92636 0.91974 0.90619 0.83016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.29 37.16 0.38 -0.52 16 2 C 0.06 0.56 6.20 37.16 0.23 0.79 16 3 O -0.36 -4.16 9.47 -40.52 -0.38 -4.55 16 4 C 0.51 7.46 7.90 34.62 0.27 7.73 16 5 O -0.50 -8.85 16.13 -19.24 -0.31 -9.16 16 6 C -0.11 -1.53 5.87 -105.00 -0.62 -2.15 16 7 C -0.09 -0.97 9.61 -39.15 -0.38 -1.35 16 8 C -0.11 -1.06 10.02 -39.67 -0.40 -1.46 16 9 C -0.12 -1.33 9.95 -39.31 -0.39 -1.72 16 10 C 0.17 2.54 6.27 -83.74 -0.53 2.02 16 11 N -0.69 -10.90 5.34 -14.26 -0.08 -10.98 16 12 C 0.72 14.27 8.50 -86.92 -0.74 13.53 16 13 O -0.59 -13.58 14.77 5.29 0.08 -13.50 16 14 N -0.66 -13.17 3.62 -183.91 -0.67 -13.83 16 15 C 0.13 2.58 8.39 -2.97 -0.02 2.55 16 16 C 0.03 0.80 3.60 -90.86 -0.33 0.47 16 17 C -0.52 -12.89 8.77 -34.44 -0.30 -13.20 16 18 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 19 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -23.46 13.29 55.43 0.74 -22.72 16 21 Si 0.90 19.75 29.54 -169.99 -5.02 14.73 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 23 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 C 0.10 2.09 8.03 -2.79 -0.02 2.06 16 26 C -0.06 -0.97 8.20 -38.97 -0.32 -1.29 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.14 1.15 7.61 -52.49 -0.40 0.75 16 33 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.41 5.47 8.44 -40.82 -0.34 5.13 16 36 H 0.07 1.48 8.09 -51.93 -0.42 1.06 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 39 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.08 1.51 8.09 -51.93 -0.42 1.09 16 42 H 0.15 2.96 6.01 -52.48 -0.32 2.65 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -31.09 366.14 -9.05 -40.14 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.67 Total: 5.25 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -3.25 Total: 9.10 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.00 Total: -47.53 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.62 Total: -27.21 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.09 -9.05 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188638238.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.649 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds