Wall clock time and date at job start Tue Mar 31 2020 13:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.46966 * 2 1 4 4 C 1.34711 * 116.99850 * 180.02562 * 3 2 1 5 5 O 1.21471 * 120.00523 * 0.02562 * 4 3 2 6 6 C 1.47748 * 120.00203 * 180.02562 * 4 3 2 7 7 C 1.39669 * 120.11175 * 0.02562 * 6 4 3 8 8 C 1.37963 * 119.98731 * 179.97438 * 7 6 4 9 9 C 1.38266 * 120.22652 * 0.02562 * 8 7 6 10 10 C 1.38946 * 120.23579 * 0.02562 * 9 8 7 11 11 N 1.39979 * 119.99443 * 179.97438 * 10 9 8 12 12 C 1.34781 * 119.99753 * 146.78073 * 11 10 9 13 13 O 1.21583 * 119.99845 * 354.68489 * 12 11 10 14 14 N 1.34773 * 119.99901 * 174.68298 * 12 11 10 15 15 C 1.47580 * 134.49227 * 179.97438 * 14 12 11 16 16 C 1.53949 * 86.11568 * 204.64058 * 15 14 12 17 17 C 1.50703 * 113.74173 * 221.94155 * 16 15 14 18 18 H 1.08003 * 120.00002 * 358.07510 * 17 16 15 19 19 C 1.37877 * 120.00315 * 178.07949 * 17 16 15 20 20 N 1.31518 * 119.99651 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00280 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47484 * 89.99691 * 21 19 17 23 23 H 1.48502 * 109.47423 * 209.99648 * 21 19 17 24 24 H 1.48507 * 109.47308 * 329.99860 * 21 19 17 25 25 C 1.47938 * 134.50215 * 0.02562 * 14 12 11 26 26 C 1.38615 * 120.00549 * 0.23507 * 10 9 8 27 27 H 1.08998 * 109.46610 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46465 * 299.99154 * 1 2 3 29 29 H 1.08991 * 109.47075 * 59.99347 * 1 2 3 30 30 H 1.09003 * 109.46961 * 240.00919 * 2 1 3 31 31 H 1.08993 * 109.47583 * 120.00603 * 2 1 3 32 32 H 1.07998 * 120.00576 * 0.02562 * 7 6 4 33 33 H 1.07996 * 119.88823 * 179.97438 * 8 7 6 34 34 H 1.07996 * 119.87976 * 179.97438 * 9 8 7 35 35 H 0.97003 * 120.00295 * 326.77272 * 11 10 9 36 36 H 1.08997 * 113.77047 * 90.34191 * 15 14 12 37 37 H 1.08995 * 113.77281 * 318.94169 * 15 14 12 38 38 H 1.08996 * 113.74256 * 90.73922 * 16 15 14 39 39 H 0.96997 * 119.99911 * 180.02562 * 20 19 17 40 40 H 1.08994 * 113.86736 * 41.09398 * 25 14 12 41 41 H 1.08998 * 113.76533 * 269.60344 * 25 14 12 42 42 H 1.08007 * 120.11397 * 179.74308 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5455 -0.0005 5 8 4.0895 0.5822 -0.0015 6 6 3.9142 2.9108 0.0000 7 6 3.0656 4.0201 0.0016 8 6 3.5958 5.2938 0.0026 9 6 4.9662 5.4774 0.0016 10 6 5.8190 4.3804 -0.0011 11 7 7.2056 4.5721 -0.0027 12 6 8.0077 3.6962 0.6344 13 8 7.5233 2.7948 1.2910 14 7 9.3467 3.8195 0.5437 15 6 10.4939 3.0687 1.0900 16 6 11.2915 4.3757 0.9294 17 6 12.6827 4.1745 0.3862 18 1 13.0427 3.1775 0.1792 19 6 13.4961 5.2632 0.1536 20 7 13.0576 6.4774 0.4053 21 14 15.2208 5.0139 -0.5190 22 1 15.1819 5.0393 -2.0033 23 1 16.1055 6.1011 -0.0285 24 1 15.7464 3.7030 -0.0601 25 6 10.2571 4.7621 -0.1427 26 6 5.2969 3.0964 -0.0076 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 1.9947 3.8808 0.0029 33 1 2.9381 6.1504 0.0035 34 1 5.3751 6.4769 0.0020 35 1 7.5893 5.3353 -0.4625 36 1 10.8386 2.2615 0.4438 37 1 10.3626 2.7588 2.1267 38 1 11.2682 5.0153 1.8117 39 1 13.6297 7.2433 0.2413 40 1 9.9369 5.8025 -0.0892 41 1 10.5323 4.4517 -1.1507 42 1 5.9582 2.2425 -0.0139 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188638238.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:28 Heat of formation + Delta-G solvation = -69.868797 kcal Electronic energy + Delta-G solvation = -25436.954572 eV Core-core repulsion = 21575.746108 eV Total energy + Delta-G solvation = -3861.208464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.97056 -41.44588 -40.04609 -38.68825 -37.72754 -35.85898 -34.63424 -32.94377 -32.06383 -31.60500 -29.83854 -26.94599 -26.89445 -26.03299 -23.88892 -23.75221 -22.24276 -22.02124 -20.56264 -19.54945 -18.97110 -18.51410 -18.17164 -17.66586 -17.35326 -16.97670 -16.77326 -16.40330 -16.27693 -15.61368 -15.25858 -15.19372 -14.78263 -14.56069 -14.36654 -14.00636 -13.85711 -13.62243 -13.33663 -13.15114 -12.97352 -12.90037 -12.82107 -12.78788 -12.57107 -12.47786 -12.25668 -11.79582 -11.63745 -11.58893 -11.42883 -11.16276 -10.93016 -10.55624 -10.10706 -9.72452 -9.13809 -8.16658 -6.27056 -0.41173 0.25797 1.32589 1.40075 1.47074 1.50026 1.55359 1.59358 2.00506 2.45561 2.75788 2.79493 3.14899 3.54915 3.86456 3.97497 4.02388 4.05458 4.14966 4.22558 4.31003 4.31890 4.42181 4.42885 4.50824 4.63727 4.66744 4.77492 4.87449 4.88475 4.92451 4.96860 5.07931 5.19756 5.26446 5.28624 5.36456 5.42057 5.60183 5.81818 5.87575 6.14619 6.22719 6.58781 6.80145 6.94138 7.38419 7.43755 8.92964 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028213 B = 0.002325 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.226488 B =12042.208561 C =12776.909752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 O -0.345 6.345 4 C 0.510 3.490 5 O -0.544 6.544 6 C -0.128 4.128 7 C -0.071 4.071 8 C -0.095 4.095 9 C -0.101 4.101 10 C 0.143 3.857 11 N -0.675 5.675 12 C 0.712 3.288 13 O -0.626 6.626 14 N -0.658 5.658 15 C 0.129 3.871 16 C 0.026 3.974 17 C -0.530 4.530 18 H 0.064 0.936 19 C 0.023 3.977 20 N -0.915 5.915 21 Si 0.956 3.044 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.270 1.270 25 C 0.121 3.879 26 C -0.088 4.088 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.166 0.834 33 H 0.183 0.817 34 H 0.164 0.836 35 H 0.421 0.579 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.039 0.961 39 H 0.265 0.735 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.542 -0.797 -4.157 24.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 O -0.262 6.262 4 C 0.357 3.643 5 O -0.436 6.436 6 C -0.130 4.130 7 C -0.090 4.090 8 C -0.113 4.113 9 C -0.122 4.122 10 C 0.048 3.952 11 N -0.323 5.323 12 C 0.416 3.584 13 O -0.508 6.508 14 N -0.395 5.395 15 C 0.006 3.994 16 C 0.006 3.994 17 C -0.569 4.569 18 H 0.082 0.918 19 C -0.178 4.178 20 N -0.553 5.553 21 Si 0.782 3.218 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.194 1.194 25 C -0.001 4.001 26 C -0.109 4.109 27 H 0.118 0.882 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.184 0.816 33 H 0.201 0.799 34 H 0.182 0.818 35 H 0.260 0.740 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -24.768 -1.600 -3.685 25.092 hybrid contribution 1.725 -0.284 -0.376 1.788 sum -23.043 -1.885 -4.060 23.474 Atomic orbital electron populations 1.21819 0.89434 1.04561 1.04108 1.23381 0.97609 0.78858 1.02451 1.86518 1.22026 1.33904 1.83754 1.21450 0.81115 0.89945 0.71799 1.90841 1.61455 1.43836 1.47478 1.18961 0.92876 0.90821 1.10342 1.21727 1.00974 0.90872 0.95421 1.21439 0.94016 0.97941 0.97866 1.21594 0.93787 0.98086 0.98720 1.17606 0.82222 0.93725 1.01636 1.42436 1.04128 1.29572 1.56206 1.15768 0.80660 0.81886 0.80068 1.90882 1.74506 1.37362 1.48010 1.49668 1.01367 1.34857 1.53578 1.23336 0.80568 0.97474 0.98001 1.20380 0.92821 0.91404 0.94749 1.21242 0.98573 0.93398 1.43640 0.91803 1.25701 1.01800 0.94943 0.95307 1.70034 1.38272 0.98586 1.48412 0.85579 0.79769 0.77785 0.78647 1.19955 1.21221 1.19440 1.23541 0.86152 0.92234 0.98147 1.21075 0.94290 0.97205 0.98338 0.88150 0.90911 0.90707 0.91433 0.91777 0.81627 0.79941 0.81826 0.74036 0.90049 0.91993 0.94317 0.92617 0.91023 0.90280 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 10.29 71.98 0.74 -0.65 16 2 C 0.05 0.91 6.20 71.98 0.45 1.35 16 3 O -0.35 -7.86 9.47 -56.21 -0.53 -8.39 16 4 C 0.51 15.39 7.90 70.34 0.56 15.94 16 5 O -0.54 -20.78 16.13 19.93 0.32 -20.46 16 6 C -0.13 -3.59 5.87 -20.11 -0.12 -3.71 16 7 C -0.07 -1.29 9.61 22.55 0.22 -1.08 16 8 C -0.09 -1.34 10.02 22.21 0.22 -1.12 16 9 C -0.10 -1.91 9.95 22.45 0.22 -1.68 16 10 C 0.14 4.14 6.27 38.10 0.24 4.38 16 11 N -0.68 -21.36 5.34 -317.28 -1.70 -23.06 16 12 C 0.71 29.27 8.50 179.05 1.52 30.79 16 13 O -0.63 -30.36 14.77 -3.98 -0.06 -30.42 16 14 N -0.66 -26.96 3.62 -854.02 -3.09 -30.05 16 15 C 0.13 5.45 8.39 86.49 0.73 6.17 16 16 C 0.03 1.20 3.60 -10.89 -0.04 1.16 16 17 C -0.53 -26.54 8.77 25.60 0.22 -26.32 16 18 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 19 C 0.02 1.17 5.46 84.65 0.46 1.63 16 20 N -0.91 -48.56 13.29 21.45 0.28 -48.27 16 21 Si 0.96 40.38 29.54 68.60 2.03 42.40 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 23 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 C 0.12 4.88 8.03 86.40 0.69 5.58 16 26 C -0.09 -2.99 8.20 22.67 0.19 -2.81 16 27 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.17 2.03 7.61 -2.91 -0.02 2.01 16 33 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 34 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.42 10.85 8.44 -92.71 -0.78 10.07 16 36 H 0.08 3.31 8.09 -2.39 -0.02 3.29 16 37 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 40 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.08 3.14 8.09 -2.39 -0.02 3.12 16 42 H 0.11 4.58 6.01 -2.91 -0.02 4.56 16 Total: -1.00 -71.46 366.14 3.82 -67.64 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.26 Total: 20.95 kcal Atomic # 6 Polarization: 23.35 SS G_CDS: 6.30 Total: 29.65 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -4.50 Total: -101.38 kcal Atomic # 8 Polarization: -59.00 SS G_CDS: -0.27 Total: -59.27 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.40 kcal Total: -71.46 3.82 -67.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188638238.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.228 kcal (2) G-P(sol) polarization free energy of solvation -71.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds