Wall clock time and date at job start Tue Mar 31 2020 12:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47375 * 2 1 4 4 O 1.42909 * 109.47182 * 239.99982 * 2 1 3 5 5 C 1.35675 * 116.99511 * 83.27193 * 4 2 1 6 6 C 1.39312 * 119.81423 * 175.04850 * 5 4 2 7 7 C 1.36441 * 120.18356 * 179.75869 * 6 5 4 8 8 C 1.40832 * 119.81124 * 0.51167 * 7 6 5 9 9 C 1.41209 * 120.17830 * 179.71737 * 8 7 6 10 10 H 1.08008 * 120.00056 * 208.86926 * 9 8 7 11 11 C 1.39891 * 120.00249 * 28.87112 * 9 8 7 12 12 N 1.30886 * 119.99589 * 11.07413 * 11 9 8 13 13 Si 1.86801 * 120.00297 * 191.07177 * 11 9 8 14 14 H 1.48501 * 109.46877 * 60.00310 * 13 11 9 15 15 H 1.48503 * 109.47103 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47136 * 300.00100 * 13 11 9 17 17 C 1.40829 * 119.64024 * 359.74105 * 8 7 6 18 18 C 1.36435 * 119.81588 * 359.97438 * 17 8 7 19 19 C 1.50701 * 109.46913 * 120.00411 * 2 1 3 20 20 C 1.36134 * 120.17400 * 95.00324 * 19 2 1 21 21 C 1.39328 * 120.98591 * 180.02562 * 20 19 2 22 22 C 1.36122 * 120.99474 * 359.97438 * 21 20 19 23 23 C 1.40503 * 119.64905 * 0.02562 * 22 21 20 24 24 C 1.40554 * 121.28736 * 179.97438 * 23 22 21 25 25 C 1.36084 * 119.65337 * 180.02562 * 24 23 22 26 26 C 1.39378 * 120.99330 * 0.02562 * 25 24 23 27 27 C 1.36082 * 120.99575 * 359.94886 * 26 25 24 28 28 C 1.40504 * 120.17341 * 275.01780 * 19 2 1 29 29 H 1.08997 * 109.47026 * 299.99783 * 1 2 3 30 30 H 1.08999 * 109.47020 * 60.00066 * 1 2 3 31 31 H 1.09001 * 109.47217 * 179.97438 * 1 2 3 32 32 H 1.08002 * 119.90894 * 0.02562 * 6 5 4 33 33 H 1.07999 * 120.09018 * 180.24632 * 7 6 5 34 34 H 0.97005 * 119.99508 * 180.02562 * 12 11 9 35 35 H 1.08003 * 120.09386 * 179.97438 * 17 8 7 36 36 H 1.07999 * 119.91023 * 179.97438 * 18 17 8 37 37 H 1.07995 * 119.50437 * 0.03224 * 20 19 2 38 38 H 1.08011 * 119.50314 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.17764 * 179.72625 * 22 21 20 40 40 H 1.07998 * 120.17119 * 359.97438 * 24 23 22 41 41 H 1.08000 * 119.50206 * 179.97438 * 25 24 23 42 42 H 1.08007 * 119.50452 * 179.97438 * 26 25 24 43 43 H 1.08003 * 120.17448 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0781 0.0521 -2.3109 6 6 2.6305 -0.5147 -3.4573 7 6 2.7020 0.2067 -4.6132 8 6 2.2252 1.5315 -4.6422 9 6 2.3008 2.2872 -5.8327 10 1 2.3919 3.3624 -5.7850 11 6 2.2575 1.6433 -7.0739 12 7 1.9317 0.3776 -7.1434 13 14 2.6646 2.5900 -8.6320 14 1 4.0526 3.1108 -8.5462 15 1 2.5469 1.6869 -9.8049 16 1 1.7186 3.7245 -8.7832 17 6 1.6731 2.0987 -3.4774 18 6 1.6037 1.3619 -2.3313 19 6 2.0323 -0.7105 1.2304 20 6 2.3571 -2.0313 1.1732 21 6 2.8226 -2.7050 2.3005 22 6 2.9666 -2.0621 3.4916 23 6 2.6413 -0.6987 3.5894 24 6 2.7763 -0.0012 4.8022 25 6 2.4511 1.3189 4.8594 26 6 1.9844 1.9927 3.7320 27 6 1.8414 1.3503 2.5409 28 6 2.1675 -0.0133 2.4428 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.9993 -1.5295 -3.4322 33 1 3.1268 -0.2356 -5.5021 34 1 1.9021 -0.0690 -8.0041 35 1 1.3057 3.1142 -3.4914 36 1 1.1810 1.7955 -1.4370 37 1 2.2526 -2.5648 0.2401 38 1 3.0729 -3.7532 2.2281 39 1 3.3243 -2.5983 4.3582 40 1 3.1354 -0.5106 5.6842 41 1 2.5553 1.8524 5.7926 42 1 1.7329 3.0405 3.8047 43 1 1.4790 1.8855 1.6756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225263520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:50 Heat of formation + Delta-G solvation = 20.664351 kcal Electronic energy + Delta-G solvation = -24996.974934 eV Core-core repulsion = 21550.541545 eV Total energy + Delta-G solvation = -3446.433389 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.65721 -38.96297 -36.90171 -36.17841 -33.85080 -33.08853 -30.78335 -30.31288 -29.55345 -29.03244 -28.60090 -25.05379 -23.89464 -23.09939 -22.97734 -21.54971 -20.70439 -19.79031 -17.68454 -17.50670 -17.07596 -16.66241 -16.10601 -15.24958 -15.03921 -14.69624 -14.35754 -14.01695 -13.93340 -13.64170 -13.59584 -13.42528 -12.86898 -12.83104 -12.47450 -12.36429 -12.08490 -11.82034 -11.70422 -11.65581 -11.36387 -11.18719 -11.11891 -10.96003 -10.92113 -10.67071 -10.37074 -10.05936 -9.81455 -9.74541 -9.30182 -9.05951 -8.64568 -7.88263 -7.64121 -6.96407 -6.66379 -4.26879 0.47379 0.98124 1.98792 2.79664 2.94707 2.96779 3.09182 3.12029 3.21624 3.91969 3.97780 4.07724 4.53091 4.66323 4.77483 4.80273 4.90267 5.00418 5.08677 5.27208 5.29992 5.35210 5.42478 5.51420 5.66517 5.69262 5.78764 5.92304 5.97619 6.05711 6.10368 6.15960 6.20401 6.24589 6.37462 6.38774 6.51374 6.61676 6.75512 6.79437 6.97384 6.98416 7.12415 7.21046 7.47444 7.56773 7.78648 8.01518 8.21694 8.45299 8.66089 8.92250 8.99088 10.28585 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026007 B = 0.002675 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.363792 B =10465.870242 C =11108.477069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.129 3.871 3 H 0.077 0.923 4 O -0.318 6.318 5 C 0.000 4.000 6 C -0.123 4.123 7 C -0.126 4.126 8 C 0.087 3.913 9 C -0.465 4.465 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.808 5.808 13 Si 0.910 3.090 14 H -0.265 1.265 15 H -0.279 1.279 16 H -0.267 1.267 17 C -0.192 4.192 18 C -0.172 4.172 19 C -0.065 4.065 20 C -0.093 4.093 21 C -0.111 4.111 22 C -0.115 4.115 23 C -0.052 4.052 24 C -0.107 4.107 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.106 4.106 28 C -0.041 4.041 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.127 0.873 34 H 0.279 0.721 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.133 0.867 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 -2.268 19.005 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.071 3.929 3 H 0.094 0.906 4 O -0.234 6.234 5 C -0.043 4.043 6 C -0.142 4.142 7 C -0.145 4.145 8 C 0.085 3.915 9 C -0.496 4.496 10 H 0.093 0.907 11 C -0.143 4.143 12 N -0.435 5.435 13 Si 0.735 3.265 14 H -0.190 1.190 15 H -0.204 1.204 16 H -0.192 1.192 17 C -0.212 4.212 18 C -0.190 4.190 19 C -0.065 4.065 20 C -0.111 4.111 21 C -0.129 4.129 22 C -0.133 4.133 23 C -0.052 4.052 24 C -0.125 4.125 25 C -0.138 4.138 26 C -0.137 4.137 27 C -0.124 4.124 28 C -0.041 4.041 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.145 0.855 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.151 0.849 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.081 -2.648 18.839 19.025 hybrid contribution -0.007 0.592 -0.730 0.940 sum 0.074 -2.057 18.109 18.226 Atomic orbital electron populations 1.22342 0.94834 1.03152 1.02632 1.20759 0.93661 0.95642 0.82797 0.90568 1.85850 1.82905 1.38854 1.15795 1.18586 1.08258 0.91661 0.85780 1.19857 1.03586 0.99178 0.91588 1.21024 1.01781 0.95758 0.95952 1.17595 0.89434 0.92352 0.92128 1.19413 1.45324 0.94790 0.90037 0.90737 1.25848 0.92568 0.94969 1.00918 1.69791 1.35582 1.10802 1.27356 0.86343 0.80029 0.80023 0.80109 1.19001 1.20430 1.19172 1.20625 1.06892 0.99548 0.94143 1.20443 1.06016 0.94255 0.98323 1.19587 0.99352 0.94503 0.93046 1.20808 0.97271 0.94211 0.98806 1.20908 0.99092 1.00113 0.92770 1.20984 1.00846 0.93325 0.98173 1.18021 0.99933 0.94048 0.93236 1.20985 1.00247 0.94733 0.96562 1.20824 0.99680 0.94781 0.98524 1.20839 0.99903 1.00079 0.92893 1.21146 0.99427 0.93473 0.98327 1.17831 0.99768 0.93781 0.92693 0.91879 0.90879 0.91747 0.88495 0.85527 0.91001 0.88726 0.88601 0.84862 0.85892 0.85760 0.85750 0.86160 0.85996 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 9.11 37.16 0.34 -2.20 16 2 C 0.13 2.10 1.85 -27.88 -0.05 2.05 16 3 H 0.08 1.26 4.93 -51.93 -0.26 1.00 16 4 O -0.32 -6.35 8.60 -18.73 -0.16 -6.52 16 5 C 0.00 0.00 6.61 -38.78 -0.26 -0.25 16 6 C -0.12 -2.95 9.92 -39.83 -0.40 -3.35 16 7 C -0.13 -3.27 8.60 -39.25 -0.34 -3.61 16 8 C 0.09 2.31 5.55 -106.81 -0.59 1.72 16 9 C -0.47 -12.35 9.05 -37.84 -0.34 -12.69 16 10 H 0.07 1.90 7.87 -52.48 -0.41 1.48 16 11 C 0.07 1.83 5.24 -17.34 -0.09 1.74 16 12 N -0.81 -21.05 10.86 55.54 0.60 -20.45 16 13 Si 0.91 18.87 29.57 -169.99 -5.03 13.84 16 14 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 15 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 16 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 17 C -0.19 -4.67 9.74 -39.25 -0.38 -5.06 16 18 C -0.17 -3.80 8.10 -39.83 -0.32 -4.13 16 19 C -0.06 -0.97 5.08 -104.52 -0.53 -1.50 16 20 C -0.09 -1.32 9.28 -39.93 -0.37 -1.69 16 21 C -0.11 -1.30 9.95 -39.94 -0.40 -1.70 16 22 C -0.12 -1.28 9.77 -39.49 -0.39 -1.66 16 23 C -0.05 -0.65 5.74 -106.83 -0.61 -1.26 16 24 C -0.11 -1.09 9.77 -39.48 -0.39 -1.48 16 25 C -0.12 -1.16 9.95 -39.93 -0.40 -1.55 16 26 C -0.12 -1.25 9.95 -39.93 -0.40 -1.64 16 27 C -0.11 -1.31 9.19 -39.49 -0.36 -1.67 16 28 C -0.04 -0.56 5.74 -106.84 -0.61 -1.17 16 29 H 0.06 0.79 8.05 -51.93 -0.42 0.37 16 30 H 0.07 1.16 6.75 -51.93 -0.35 0.81 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 33 H 0.13 3.38 6.23 -52.49 -0.33 3.06 16 34 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 35 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 36 H 0.10 1.84 5.35 -52.49 -0.28 1.56 16 37 H 0.13 1.95 7.29 -52.49 -0.38 1.57 16 38 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 43 H 0.13 1.50 6.49 -52.48 -0.34 1.16 16 LS Contribution 354.33 15.07 5.34 5.34 Total: -1.00 -28.72 354.33 -11.42 -40.13 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -5.29 Total: 8.75 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: -6.89 Total: -41.10 kcal Atomic # 7 Polarization: -21.05 SS G_CDS: 0.60 Total: -20.45 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.16 Total: -6.52 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.72 -11.42 -40.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225263520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.799 kcal (2) G-P(sol) polarization free energy of solvation -28.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds