Wall clock time and date at job start Tue Mar 31 2020 12:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47375 * 2 1 4 4 O 1.42909 * 109.47182 * 239.99982 * 2 1 3 5 5 C 1.35675 * 116.99511 * 83.27193 * 4 2 1 6 6 C 1.39312 * 119.81423 * 175.04850 * 5 4 2 7 7 C 1.36441 * 120.18356 * 179.75869 * 6 5 4 8 8 C 1.40832 * 119.81124 * 0.51167 * 7 6 5 9 9 C 1.41209 * 120.17830 * 179.71737 * 8 7 6 10 10 H 1.08008 * 120.00056 * 208.86926 * 9 8 7 11 11 C 1.39891 * 120.00249 * 28.87112 * 9 8 7 12 12 N 1.30886 * 119.99589 * 11.07413 * 11 9 8 13 13 Si 1.86801 * 120.00297 * 191.07177 * 11 9 8 14 14 H 1.48501 * 109.46877 * 60.00310 * 13 11 9 15 15 H 1.48503 * 109.47103 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47136 * 300.00100 * 13 11 9 17 17 C 1.40829 * 119.64024 * 359.74105 * 8 7 6 18 18 C 1.36435 * 119.81588 * 359.97438 * 17 8 7 19 19 C 1.50701 * 109.46913 * 120.00411 * 2 1 3 20 20 C 1.36134 * 120.17400 * 95.00324 * 19 2 1 21 21 C 1.39328 * 120.98591 * 180.02562 * 20 19 2 22 22 C 1.36122 * 120.99474 * 359.97438 * 21 20 19 23 23 C 1.40503 * 119.64905 * 0.02562 * 22 21 20 24 24 C 1.40554 * 121.28736 * 179.97438 * 23 22 21 25 25 C 1.36084 * 119.65337 * 180.02562 * 24 23 22 26 26 C 1.39378 * 120.99330 * 0.02562 * 25 24 23 27 27 C 1.36082 * 120.99575 * 359.94886 * 26 25 24 28 28 C 1.40504 * 120.17341 * 275.01780 * 19 2 1 29 29 H 1.08997 * 109.47026 * 299.99783 * 1 2 3 30 30 H 1.08999 * 109.47020 * 60.00066 * 1 2 3 31 31 H 1.09001 * 109.47217 * 179.97438 * 1 2 3 32 32 H 1.08002 * 119.90894 * 0.02562 * 6 5 4 33 33 H 1.07999 * 120.09018 * 180.24632 * 7 6 5 34 34 H 0.97005 * 119.99508 * 180.02562 * 12 11 9 35 35 H 1.08003 * 120.09386 * 179.97438 * 17 8 7 36 36 H 1.07999 * 119.91023 * 179.97438 * 18 17 8 37 37 H 1.07995 * 119.50437 * 0.03224 * 20 19 2 38 38 H 1.08011 * 119.50314 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.17764 * 179.72625 * 22 21 20 40 40 H 1.07998 * 120.17119 * 359.97438 * 24 23 22 41 41 H 1.08000 * 119.50206 * 179.97438 * 25 24 23 42 42 H 1.08007 * 119.50452 * 179.97438 * 26 25 24 43 43 H 1.08003 * 120.17448 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0781 0.0521 -2.3109 6 6 2.6305 -0.5147 -3.4573 7 6 2.7020 0.2067 -4.6132 8 6 2.2252 1.5315 -4.6422 9 6 2.3008 2.2872 -5.8327 10 1 2.3919 3.3624 -5.7850 11 6 2.2575 1.6433 -7.0739 12 7 1.9317 0.3776 -7.1434 13 14 2.6646 2.5900 -8.6320 14 1 4.0526 3.1108 -8.5462 15 1 2.5469 1.6869 -9.8049 16 1 1.7186 3.7245 -8.7832 17 6 1.6731 2.0987 -3.4774 18 6 1.6037 1.3619 -2.3313 19 6 2.0323 -0.7105 1.2304 20 6 2.3571 -2.0313 1.1732 21 6 2.8226 -2.7050 2.3005 22 6 2.9666 -2.0621 3.4916 23 6 2.6413 -0.6987 3.5894 24 6 2.7763 -0.0012 4.8022 25 6 2.4511 1.3189 4.8594 26 6 1.9844 1.9927 3.7320 27 6 1.8414 1.3503 2.5409 28 6 2.1675 -0.0133 2.4428 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.9993 -1.5295 -3.4322 33 1 3.1268 -0.2356 -5.5021 34 1 1.9021 -0.0690 -8.0041 35 1 1.3057 3.1142 -3.4914 36 1 1.1810 1.7955 -1.4370 37 1 2.2526 -2.5648 0.2401 38 1 3.0729 -3.7532 2.2281 39 1 3.3243 -2.5983 4.3582 40 1 3.1354 -0.5106 5.6842 41 1 2.5553 1.8524 5.7926 42 1 1.7329 3.0405 3.8047 43 1 1.4790 1.8855 1.6756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225263520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:49 Heat of formation + Delta-G solvation = 9.612757 kcal Electronic energy + Delta-G solvation = -24997.454167 eV Core-core repulsion = 21550.541545 eV Total energy + Delta-G solvation = -3446.912622 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.66408 -40.51419 -38.45987 -37.26340 -35.35645 -34.58010 -32.05841 -31.28039 -31.15817 -30.81396 -29.66831 -26.87661 -25.06830 -24.09984 -23.90552 -23.14305 -22.48672 -21.10035 -19.31732 -18.89374 -18.23333 -17.77879 -17.14613 -17.00246 -16.35451 -16.13212 -15.75607 -15.31411 -15.12749 -14.89548 -14.71393 -14.43286 -14.31139 -14.15454 -13.99018 -13.65183 -13.48232 -13.44144 -13.18219 -12.81715 -12.76814 -12.66517 -12.39967 -12.38224 -12.18425 -11.89062 -11.66542 -11.65023 -11.49632 -11.13295 -10.94175 -10.72041 -9.56245 -9.53477 -8.86454 -8.77889 -8.54853 -6.25295 -0.40984 0.09157 0.94778 1.02093 1.08884 1.39742 1.51105 1.53213 2.09450 2.23860 2.48741 2.76028 3.16303 3.54782 3.68620 3.86416 3.92171 3.99992 4.04036 4.16323 4.18115 4.29940 4.31938 4.36039 4.47372 4.51230 4.59121 4.67986 4.75592 4.85471 4.88396 5.02158 5.06408 5.13783 5.21218 5.24401 5.28570 5.30853 5.37470 5.51770 5.57448 5.63337 5.64474 5.75534 5.88052 5.91950 6.06148 6.11325 6.26876 6.57158 6.80268 6.96628 7.08781 8.41865 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026007 B = 0.002675 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.363792 B =10465.870242 C =11108.477069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.126 3.874 3 H 0.073 0.927 4 O -0.325 6.325 5 C 0.011 3.989 6 C -0.136 4.136 7 C -0.144 4.144 8 C 0.054 3.946 9 C -0.500 4.500 10 H 0.075 0.925 11 C 0.030 3.970 12 N -0.841 5.841 13 Si 0.984 3.016 14 H -0.261 1.261 15 H -0.270 1.270 16 H -0.260 1.260 17 C -0.201 4.201 18 C -0.168 4.168 19 C -0.089 4.089 20 C -0.107 4.107 21 C -0.123 4.123 22 C -0.103 4.103 23 C -0.072 4.072 24 C -0.106 4.106 25 C -0.122 4.122 26 C -0.113 4.113 27 C -0.134 4.134 28 C -0.057 4.057 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.285 0.715 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.147 0.853 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.152 0.848 42 H 0.144 0.856 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.283 -1.704 21.836 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.070 3.930 3 H 0.091 0.909 4 O -0.241 6.241 5 C -0.033 4.033 6 C -0.155 4.155 7 C -0.163 4.163 8 C 0.052 3.948 9 C -0.531 4.531 10 H 0.093 0.907 11 C -0.183 4.183 12 N -0.468 5.468 13 Si 0.805 3.195 14 H -0.186 1.186 15 H -0.194 1.194 16 H -0.185 1.185 17 C -0.220 4.220 18 C -0.186 4.186 19 C -0.089 4.089 20 C -0.125 4.125 21 C -0.141 4.141 22 C -0.121 4.121 23 C -0.072 4.072 24 C -0.123 4.123 25 C -0.140 4.140 26 C -0.131 4.131 27 C -0.152 4.152 28 C -0.057 4.057 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.145 0.855 37 H 0.136 0.864 38 H 0.164 0.836 39 H 0.177 0.823 40 H 0.173 0.827 41 H 0.170 0.830 42 H 0.162 0.838 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.278 -2.090 21.698 21.800 hybrid contribution -0.083 0.381 -1.319 1.376 sum 0.195 -1.708 20.379 20.451 Atomic orbital electron populations 1.22277 0.93712 1.03184 1.03063 1.20962 0.94571 0.95486 0.81971 0.90878 1.85851 1.82960 1.39276 1.16035 1.18658 1.06496 0.91786 0.86376 1.20019 1.03988 0.99748 0.91765 1.20936 1.03025 0.96200 0.96177 1.17940 0.90599 0.92957 0.93286 1.19677 1.47285 0.95020 0.91097 0.90669 1.26719 0.91741 0.95863 1.03930 1.69866 1.36161 1.12301 1.28509 0.85223 0.79801 0.78646 0.75819 1.18558 1.19432 1.18477 1.20857 1.06675 1.00305 0.94211 1.20709 1.05181 0.93934 0.98820 1.19511 1.01520 0.94965 0.92942 1.20869 0.98051 0.94228 0.99318 1.21122 0.99390 1.01286 0.92312 1.21395 0.98867 0.92977 0.98850 1.18386 1.00263 0.94887 0.93707 1.21369 0.99277 0.95076 0.96607 1.21237 0.98485 0.94863 0.99398 1.21202 0.98265 1.01178 0.92412 1.21235 1.01274 0.93321 0.99341 1.17998 1.00491 0.94513 0.92722 0.89527 0.92192 0.91934 0.87350 0.87115 0.90418 0.87574 0.85550 0.86420 0.83573 0.82340 0.82679 0.82996 0.83804 0.85750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.84 9.11 71.98 0.66 -4.18 16 2 C 0.13 4.16 1.85 29.85 0.06 4.22 16 3 H 0.07 2.42 4.93 -2.39 -0.01 2.41 16 4 O -0.33 -13.25 8.60 -89.92 -0.77 -14.03 16 5 C 0.01 0.49 6.61 22.79 0.15 0.64 16 6 C -0.14 -6.78 9.92 22.11 0.22 -6.56 16 7 C -0.14 -7.83 8.60 22.48 0.19 -7.64 16 8 C 0.05 2.99 5.55 -21.28 -0.12 2.87 16 9 C -0.50 -27.46 9.05 23.40 0.21 -27.25 16 10 H 0.08 3.95 7.87 -2.91 -0.02 3.92 16 11 C 0.03 1.54 5.24 85.23 0.45 1.99 16 12 N -0.84 -45.22 10.86 21.82 0.24 -44.99 16 13 Si 0.98 39.16 29.57 68.60 2.03 41.19 16 14 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 15 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 16 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 17 C -0.20 -9.97 9.74 22.48 0.22 -9.75 16 18 C -0.17 -7.50 8.10 22.11 0.18 -7.32 16 19 C -0.09 -2.68 5.08 -19.80 -0.10 -2.78 16 20 C -0.11 -3.05 9.28 22.04 0.20 -2.84 16 21 C -0.12 -2.72 9.95 22.04 0.22 -2.50 16 22 C -0.10 -2.01 9.77 22.33 0.22 -1.79 16 23 C -0.07 -1.62 5.74 -21.30 -0.12 -1.74 16 24 C -0.11 -1.75 9.77 22.33 0.22 -1.54 16 25 C -0.12 -1.88 9.95 22.04 0.22 -1.66 16 26 C -0.11 -2.06 9.95 22.04 0.22 -1.84 16 27 C -0.13 -3.16 9.19 22.33 0.21 -2.95 16 28 C -0.06 -1.52 5.74 -21.30 -0.12 -1.64 16 29 H 0.09 2.10 8.05 -2.39 -0.02 2.08 16 30 H 0.06 1.89 6.75 -2.39 -0.02 1.88 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 33 H 0.11 6.27 6.23 -2.91 -0.02 6.26 16 34 H 0.29 13.98 8.30 -92.70 -0.77 13.21 16 35 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 36 H 0.13 4.78 5.35 -2.91 -0.02 4.76 16 37 H 0.12 3.60 7.29 -2.91 -0.02 3.58 16 38 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 41 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 42 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 43 H 0.12 2.87 6.49 -2.91 -0.02 2.85 16 Total: -1.00 -64.59 354.33 5.89 -58.70 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 1.02 Total: 33.40 kcal Atomic # 6 Polarization: -77.65 SS G_CDS: 3.37 Total: -74.28 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.24 Total: -44.99 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.77 Total: -14.03 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -64.59 5.89 -58.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225263520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.317 kcal (2) G-P(sol) polarization free energy of solvation -64.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds