Wall clock time and date at job start Tue Mar 31 2020 12:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47045 * 2 1 4 4 O 1.42900 * 109.47360 * 239.99087 * 2 1 3 5 5 C 1.35668 * 116.99499 * 84.44866 * 4 2 1 6 6 C 1.39312 * 119.82304 * 355.55980 * 5 4 2 7 7 C 1.36434 * 120.18513 * 180.02562 * 6 5 4 8 8 C 1.40837 * 119.81363 * 359.97438 * 7 6 5 9 9 C 1.41217 * 120.17876 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00118 * 334.69342 * 9 8 7 11 11 C 1.39892 * 119.99942 * 154.69850 * 9 8 7 12 12 N 1.30881 * 119.99836 * 342.92818 * 11 9 8 13 13 Si 1.86803 * 119.99957 * 162.92224 * 11 9 8 14 14 H 1.48499 * 109.46693 * 94.70696 * 13 11 9 15 15 H 1.48497 * 109.47104 * 214.70906 * 13 11 9 16 16 H 1.48497 * 109.46928 * 334.71219 * 13 11 9 17 17 C 1.40830 * 119.64038 * 0.25548 * 8 7 6 18 18 C 1.36441 * 119.81173 * 359.46288 * 17 8 7 19 19 C 1.50708 * 109.47053 * 119.99060 * 2 1 3 20 20 C 1.39373 * 119.50505 * 84.99724 * 19 2 1 21 21 C 1.36094 * 120.99001 * 180.02562 * 20 19 2 22 22 C 1.40531 * 119.65397 * 359.97438 * 21 20 19 23 23 C 1.40544 * 121.29376 * 180.02562 * 22 21 20 24 24 C 1.36088 * 119.65659 * 179.97438 * 23 22 21 25 25 C 1.39377 * 120.99090 * 0.02562 * 24 23 22 26 26 C 1.36094 * 120.98737 * 0.02562 * 25 24 23 27 27 C 1.40533 * 119.65321 * 359.95756 * 26 25 24 28 28 C 1.36091 * 119.50446 * 264.73479 * 19 2 1 29 29 H 1.08998 * 109.47200 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47218 * 300.01269 * 1 2 3 31 31 H 1.09003 * 109.46948 * 60.00798 * 1 2 3 32 32 H 1.08002 * 119.90690 * 359.97438 * 6 5 4 33 33 H 1.08005 * 120.09337 * 179.97438 * 7 6 5 34 34 H 0.97001 * 119.99676 * 180.02562 * 12 11 9 35 35 H 1.08000 * 120.09521 * 179.72533 * 17 8 7 36 36 H 1.08000 * 119.90615 * 180.28387 * 18 17 8 37 37 H 1.08002 * 119.50354 * 0.02562 * 20 19 2 38 38 H 1.08004 * 120.16877 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.16681 * 359.96086 * 23 22 21 40 40 H 1.08001 * 119.50346 * 180.02562 * 24 23 22 41 41 H 1.07999 * 119.50443 * 179.97438 * 25 24 23 42 42 H 1.08000 * 120.17057 * 179.97438 * 26 25 24 43 43 H 1.07994 * 120.17502 * 359.97271 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.1015 0.0582 -2.3049 6 6 1.6544 1.3776 -2.3196 7 6 1.7459 2.1203 -3.4603 8 6 2.2948 1.5498 -4.6251 9 6 2.3928 2.3114 -5.8103 10 1 1.7196 3.1392 -5.9774 11 6 3.3617 1.9934 -6.7680 12 7 4.3765 1.2328 -6.4446 13 14 3.2069 2.6542 -8.5083 14 1 3.9947 3.9067 -8.6340 15 1 3.7235 1.6460 -9.4684 16 1 1.7795 2.9353 -8.8059 17 6 2.7399 0.2139 -4.6032 18 6 2.6465 -0.5134 -3.4526 19 6 2.0324 -0.7102 1.2306 20 6 2.1614 -2.0979 1.2177 21 6 2.6115 -2.7701 2.3121 22 6 2.9526 -2.0573 3.4742 23 6 3.4214 -2.7163 4.6236 24 6 3.7427 -1.9929 5.7307 25 6 3.6136 -0.6052 5.7436 26 6 3.1620 0.0667 4.6496 27 6 2.8207 -0.6463 3.4877 28 6 2.3582 0.0135 2.3361 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.2333 1.8134 -1.4256 33 1 1.3985 3.1429 -3.4701 34 1 5.0485 1.0126 -7.1085 35 1 3.1580 -0.2323 -5.4934 36 1 2.9917 -1.5366 -3.4328 37 1 1.9003 -2.6481 0.3257 38 1 2.7060 -3.8457 2.2876 39 1 3.5259 -3.7912 4.6283 40 1 4.1031 -2.5018 6.6125 41 1 3.8751 -0.0550 6.6354 42 1 3.0667 1.1422 4.6743 43 1 2.2576 1.0887 2.3301 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225265098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:51 Heat of formation + Delta-G solvation = 18.399128 kcal Electronic energy + Delta-G solvation = -24546.504348 eV Core-core repulsion = 21099.972731 eV Total energy + Delta-G solvation = -3446.531616 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.52647 -39.07280 -37.12715 -36.00966 -33.43668 -32.96642 -31.85777 -29.88671 -29.51644 -29.00660 -28.59615 -25.11390 -23.91427 -23.33376 -22.05403 -21.96631 -20.74881 -20.19349 -17.49353 -17.43355 -17.23983 -16.53630 -16.07648 -15.17383 -14.91376 -14.78883 -14.59279 -13.99735 -13.84617 -13.63888 -13.61647 -13.41061 -13.06892 -12.85660 -12.51499 -12.30732 -12.08951 -11.94764 -11.81074 -11.48809 -11.33063 -11.19091 -11.07266 -10.94704 -10.91638 -10.63754 -10.48155 -10.07017 -9.93493 -9.77918 -9.32165 -9.02907 -8.56986 -7.94779 -7.63801 -7.00949 -6.71424 -4.25212 0.46307 0.94496 1.98786 2.77998 2.91560 2.95310 3.08741 3.12765 3.21407 3.94266 3.97150 4.09927 4.52948 4.62858 4.70964 4.77602 4.87214 5.01053 5.10265 5.24651 5.29903 5.37243 5.42499 5.48438 5.67026 5.68439 5.76311 5.87326 5.94285 6.06686 6.07321 6.15799 6.19800 6.22865 6.34145 6.35825 6.53775 6.58359 6.74997 6.76971 6.94990 6.98789 7.12152 7.19646 7.47279 7.56276 7.79813 8.01039 8.20736 8.45736 8.65901 8.90632 8.99171 10.23312 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029553 B = 0.002319 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.229301 B =12072.589996 C =12151.479190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.125 3.875 3 H 0.076 0.924 4 O -0.318 6.318 5 C -0.005 4.005 6 C -0.168 4.168 7 C -0.197 4.197 8 C 0.088 3.912 9 C -0.464 4.464 10 H 0.076 0.924 11 C 0.074 3.926 12 N -0.800 5.800 13 Si 0.906 3.094 14 H -0.272 1.272 15 H -0.276 1.276 16 H -0.261 1.261 17 C -0.133 4.133 18 C -0.120 4.120 19 C -0.065 4.065 20 C -0.084 4.084 21 C -0.115 4.115 22 C -0.052 4.052 23 C -0.106 4.106 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.103 4.103 27 C -0.050 4.050 28 C -0.103 4.103 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.279 0.721 35 H 0.124 0.876 36 H 0.096 0.904 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.126 0.874 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.582 -5.298 18.632 19.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.068 3.932 3 H 0.094 0.906 4 O -0.234 6.234 5 C -0.048 4.048 6 C -0.187 4.187 7 C -0.217 4.217 8 C 0.086 3.914 9 C -0.494 4.494 10 H 0.094 0.906 11 C -0.142 4.142 12 N -0.426 5.426 13 Si 0.731 3.269 14 H -0.197 1.197 15 H -0.201 1.201 16 H -0.185 1.185 17 C -0.152 4.152 18 C -0.139 4.139 19 C -0.065 4.065 20 C -0.102 4.102 21 C -0.133 4.133 22 C -0.052 4.052 23 C -0.124 4.124 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.121 4.121 27 C -0.050 4.050 28 C -0.121 4.121 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.142 0.858 36 H 0.115 0.885 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.144 0.856 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.318 -5.587 18.545 19.507 hybrid contribution 0.058 0.572 -0.742 0.938 sum -2.260 -5.015 17.804 18.634 Atomic orbital electron populations 1.22313 0.94966 1.02949 1.02557 1.20891 0.93686 0.95668 0.82963 0.90636 1.85870 1.83086 1.38248 1.16170 1.18558 1.08390 0.91699 0.86154 1.20436 1.05881 0.94022 0.98372 1.20579 1.09797 0.98361 0.92945 1.17594 0.90292 0.91599 0.91926 1.19452 1.14787 1.13869 1.01267 0.90599 1.25873 0.93849 0.93947 1.00549 1.69834 1.07703 1.29748 1.35341 0.86335 0.79727 0.79172 0.81683 1.19688 1.20097 1.18526 1.20958 1.03594 0.94002 0.96654 1.19831 1.03163 0.99088 0.91802 1.19541 0.98326 0.94197 0.94418 1.20796 0.97272 0.93813 0.98279 1.21019 1.00096 0.99681 0.92480 1.18125 0.99723 0.92737 0.94634 1.21022 0.99068 0.99701 0.92602 1.20811 1.00607 0.94238 0.98353 1.20806 1.00320 0.94500 0.98481 1.21029 0.98926 0.99709 0.92476 1.18010 0.99976 0.92732 0.94327 1.20807 0.99417 0.99679 0.92205 0.91842 0.91938 0.91032 0.88565 0.88769 0.90969 0.85781 0.88550 0.85068 0.85541 0.85742 0.86232 0.86187 0.85648 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 9.14 37.16 0.34 -2.06 16 2 C 0.13 2.01 2.41 -27.88 -0.07 1.94 16 3 H 0.08 1.23 6.14 -51.93 -0.32 0.91 16 4 O -0.32 -6.33 8.89 -18.71 -0.17 -6.49 16 5 C 0.00 -0.11 6.62 -38.78 -0.26 -0.37 16 6 C -0.17 -3.74 8.15 -39.83 -0.32 -4.06 16 7 C -0.20 -4.80 9.74 -39.25 -0.38 -5.18 16 8 C 0.09 2.35 5.56 -106.80 -0.59 1.75 16 9 C -0.46 -12.29 9.04 -37.83 -0.34 -12.63 16 10 H 0.08 1.93 7.90 -52.49 -0.41 1.52 16 11 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 12 N -0.80 -20.79 10.98 55.54 0.61 -20.18 16 13 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 14 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 15 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 16 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 17 C -0.13 -3.45 8.63 -39.25 -0.34 -3.79 16 18 C -0.12 -2.88 9.92 -39.83 -0.40 -3.28 16 19 C -0.06 -0.94 4.97 -104.97 -0.52 -1.46 16 20 C -0.08 -1.17 9.25 -39.93 -0.37 -1.53 16 21 C -0.11 -1.40 9.77 -39.49 -0.39 -1.79 16 22 C -0.05 -0.64 5.74 -106.83 -0.61 -1.26 16 23 C -0.11 -1.07 9.77 -39.49 -0.39 -1.46 16 24 C -0.12 -1.11 9.95 -39.93 -0.40 -1.51 16 25 C -0.12 -1.14 9.95 -39.93 -0.40 -1.53 16 26 C -0.10 -1.08 9.77 -39.49 -0.39 -1.47 16 27 C -0.05 -0.63 5.74 -106.83 -0.61 -1.25 16 28 C -0.10 -1.34 9.36 -39.48 -0.37 -1.71 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.09 6.91 -51.93 -0.36 0.73 16 32 H 0.10 1.85 5.41 -52.49 -0.28 1.56 16 33 H 0.09 2.15 8.06 -52.48 -0.42 1.72 16 34 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 35 H 0.12 3.31 6.21 -52.49 -0.33 2.99 16 36 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 37 H 0.13 1.84 7.58 -52.49 -0.40 1.44 16 38 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 43 H 0.13 1.42 8.04 -52.49 -0.42 1.00 16 LS Contribution 358.59 15.07 5.40 5.40 Total: -1.00 -28.81 358.59 -11.53 -40.35 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -5.46 Total: 8.11 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: -6.89 Total: -40.88 kcal Atomic # 7 Polarization: -20.79 SS G_CDS: 0.61 Total: -20.18 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.17 Total: -6.49 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.81 -11.53 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.747 kcal (2) G-P(sol) polarization free energy of solvation -28.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds