Wall clock time and date at job start Tue Mar 31 2020 12:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47045 * 2 1 4 4 O 1.42900 * 109.47360 * 239.99087 * 2 1 3 5 5 C 1.35668 * 116.99499 * 84.44866 * 4 2 1 6 6 C 1.39312 * 119.82304 * 355.55980 * 5 4 2 7 7 C 1.36434 * 120.18513 * 180.02562 * 6 5 4 8 8 C 1.40837 * 119.81363 * 359.97438 * 7 6 5 9 9 C 1.41217 * 120.17876 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00118 * 334.69342 * 9 8 7 11 11 C 1.39892 * 119.99942 * 154.69850 * 9 8 7 12 12 N 1.30881 * 119.99836 * 342.92818 * 11 9 8 13 13 Si 1.86803 * 119.99957 * 162.92224 * 11 9 8 14 14 H 1.48499 * 109.46693 * 94.70696 * 13 11 9 15 15 H 1.48497 * 109.47104 * 214.70906 * 13 11 9 16 16 H 1.48497 * 109.46928 * 334.71219 * 13 11 9 17 17 C 1.40830 * 119.64038 * 0.25548 * 8 7 6 18 18 C 1.36441 * 119.81173 * 359.46288 * 17 8 7 19 19 C 1.50708 * 109.47053 * 119.99060 * 2 1 3 20 20 C 1.39373 * 119.50505 * 84.99724 * 19 2 1 21 21 C 1.36094 * 120.99001 * 180.02562 * 20 19 2 22 22 C 1.40531 * 119.65397 * 359.97438 * 21 20 19 23 23 C 1.40544 * 121.29376 * 180.02562 * 22 21 20 24 24 C 1.36088 * 119.65659 * 179.97438 * 23 22 21 25 25 C 1.39377 * 120.99090 * 0.02562 * 24 23 22 26 26 C 1.36094 * 120.98737 * 0.02562 * 25 24 23 27 27 C 1.40533 * 119.65321 * 359.95756 * 26 25 24 28 28 C 1.36091 * 119.50446 * 264.73479 * 19 2 1 29 29 H 1.08998 * 109.47200 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47218 * 300.01269 * 1 2 3 31 31 H 1.09003 * 109.46948 * 60.00798 * 1 2 3 32 32 H 1.08002 * 119.90690 * 359.97438 * 6 5 4 33 33 H 1.08005 * 120.09337 * 179.97438 * 7 6 5 34 34 H 0.97001 * 119.99676 * 180.02562 * 12 11 9 35 35 H 1.08000 * 120.09521 * 179.72533 * 17 8 7 36 36 H 1.08000 * 119.90615 * 180.28387 * 18 17 8 37 37 H 1.08002 * 119.50354 * 0.02562 * 20 19 2 38 38 H 1.08004 * 120.16877 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.16681 * 359.96086 * 23 22 21 40 40 H 1.08001 * 119.50346 * 180.02562 * 24 23 22 41 41 H 1.07999 * 119.50443 * 179.97438 * 25 24 23 42 42 H 1.08000 * 120.17057 * 179.97438 * 26 25 24 43 43 H 1.07994 * 120.17502 * 359.97271 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.1015 0.0582 -2.3049 6 6 1.6544 1.3776 -2.3196 7 6 1.7459 2.1203 -3.4603 8 6 2.2948 1.5498 -4.6251 9 6 2.3928 2.3114 -5.8103 10 1 1.7196 3.1392 -5.9774 11 6 3.3617 1.9934 -6.7680 12 7 4.3765 1.2328 -6.4446 13 14 3.2069 2.6542 -8.5083 14 1 3.9947 3.9067 -8.6340 15 1 3.7235 1.6460 -9.4684 16 1 1.7795 2.9353 -8.8059 17 6 2.7399 0.2139 -4.6032 18 6 2.6465 -0.5134 -3.4526 19 6 2.0324 -0.7102 1.2306 20 6 2.1614 -2.0979 1.2177 21 6 2.6115 -2.7701 2.3121 22 6 2.9526 -2.0573 3.4742 23 6 3.4214 -2.7163 4.6236 24 6 3.7427 -1.9929 5.7307 25 6 3.6136 -0.6052 5.7436 26 6 3.1620 0.0667 4.6496 27 6 2.8207 -0.6463 3.4877 28 6 2.3582 0.0135 2.3361 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.2333 1.8134 -1.4256 33 1 1.3985 3.1429 -3.4701 34 1 5.0485 1.0126 -7.1085 35 1 3.1580 -0.2323 -5.4934 36 1 2.9917 -1.5366 -3.4328 37 1 1.9003 -2.6481 0.3257 38 1 2.7060 -3.8457 2.2876 39 1 3.5259 -3.7912 4.6283 40 1 4.1031 -2.5018 6.6125 41 1 3.8751 -0.0550 6.6354 42 1 3.0667 1.1422 4.6743 43 1 2.2576 1.0887 2.3301 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225265098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:50 Heat of formation + Delta-G solvation = 7.460006 kcal Electronic energy + Delta-G solvation = -24546.978703 eV Core-core repulsion = 21099.972731 eV Total energy + Delta-G solvation = -3447.005972 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.49245 -40.58284 -38.59937 -37.26512 -35.22403 -33.99038 -32.97759 -31.49178 -30.90755 -30.55825 -29.60289 -26.89830 -25.09196 -24.23484 -23.48278 -22.89746 -22.51277 -21.65731 -19.29886 -18.82053 -18.19299 -17.70759 -17.20246 -16.87790 -16.15667 -16.02747 -15.75261 -15.60823 -15.08833 -14.90975 -14.65402 -14.34874 -14.28084 -14.13289 -14.08746 -13.75544 -13.65515 -13.21304 -13.03212 -12.96953 -12.81702 -12.73680 -12.39773 -12.19887 -12.06420 -11.85507 -11.72945 -11.64348 -11.48839 -11.13731 -10.91039 -10.85238 -9.55108 -9.47666 -8.89878 -8.80348 -8.58676 -6.22352 -0.39232 0.05236 0.95808 1.03237 1.12268 1.39639 1.49890 1.55577 2.02961 2.23086 2.57936 2.74542 3.18077 3.61990 3.70722 3.71905 3.97841 4.00891 4.06890 4.20171 4.26712 4.31874 4.33982 4.36073 4.47431 4.48630 4.58731 4.66284 4.81133 4.89074 4.91728 5.01285 5.07471 5.13015 5.22217 5.23611 5.29733 5.31742 5.35180 5.51688 5.60512 5.64052 5.66653 5.70705 5.90168 5.91152 6.06503 6.10942 6.27215 6.57620 6.81908 6.95898 7.10890 8.38167 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029553 B = 0.002319 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.229301 B =12072.589996 C =12151.479190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.121 3.879 3 H 0.074 0.926 4 O -0.325 6.325 5 C 0.007 3.993 6 C -0.165 4.165 7 C -0.206 4.206 8 C 0.055 3.945 9 C -0.499 4.499 10 H 0.076 0.924 11 C 0.032 3.968 12 N -0.834 5.834 13 Si 0.982 3.018 14 H -0.263 1.263 15 H -0.267 1.267 16 H -0.259 1.259 17 C -0.151 4.151 18 C -0.134 4.134 19 C -0.086 4.086 20 C -0.108 4.108 21 C -0.111 4.111 22 C -0.071 4.071 23 C -0.116 4.116 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.117 4.117 27 C -0.070 4.070 28 C -0.104 4.104 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.129 0.871 33 H 0.105 0.895 34 H 0.287 0.713 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.546 -5.146 21.176 21.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.065 3.935 3 H 0.092 0.908 4 O -0.241 6.241 5 C -0.037 4.037 6 C -0.183 4.183 7 C -0.226 4.226 8 C 0.053 3.947 9 C -0.529 4.529 10 H 0.094 0.906 11 C -0.181 4.181 12 N -0.461 5.461 13 Si 0.802 3.198 14 H -0.188 1.188 15 H -0.192 1.192 16 H -0.183 1.183 17 C -0.171 4.171 18 C -0.153 4.153 19 C -0.086 4.086 20 C -0.126 4.126 21 C -0.128 4.128 22 C -0.071 4.071 23 C -0.134 4.134 24 C -0.137 4.137 25 C -0.137 4.137 26 C -0.135 4.135 27 C -0.070 4.070 28 C -0.121 4.121 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.146 0.854 33 H 0.124 0.876 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.138 0.862 38 H 0.166 0.834 39 H 0.163 0.837 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.160 0.840 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.290 -5.440 21.118 21.928 hybrid contribution 0.075 0.442 -1.184 1.266 sum -2.215 -4.998 19.934 20.670 Atomic orbital electron populations 1.22265 0.93464 1.03226 1.03193 1.21145 0.94905 0.95479 0.82000 0.90826 1.85872 1.83143 1.38702 1.16429 1.18620 1.06507 0.91828 0.86726 1.20711 1.05026 0.93705 0.98870 1.20821 1.09576 0.99161 0.93044 1.17946 0.91577 0.92110 0.93109 1.19702 1.15910 1.14744 1.02547 0.90607 1.26740 0.92927 0.94011 1.04460 1.69895 1.08411 1.30847 1.36913 0.85204 0.79722 0.78726 0.76104 1.18829 1.19196 1.18258 1.20875 1.04907 0.94362 0.96932 1.19997 1.03587 0.99657 0.92059 1.19445 1.00419 0.94528 0.94190 1.20780 0.99211 0.93852 0.98754 1.21261 0.98843 1.00771 0.91959 1.18432 1.00182 0.93029 0.95435 1.21316 0.98916 1.00999 0.92164 1.21244 0.99086 0.94417 0.98926 1.21231 0.98631 0.94909 0.98955 1.21292 0.99252 1.00759 0.92191 1.18283 1.00467 0.93259 0.94946 1.20993 0.98751 1.00393 0.92005 0.91816 0.89303 0.92230 0.85360 0.87645 0.90289 0.87362 0.87482 0.86173 0.83440 0.83655 0.83280 0.83366 0.83968 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.47 9.14 71.98 0.66 -3.82 16 2 C 0.12 3.83 2.41 29.85 0.07 3.90 16 3 H 0.07 2.33 6.14 -2.39 -0.01 2.32 16 4 O -0.33 -13.04 8.89 -89.85 -0.80 -13.84 16 5 C 0.01 0.32 6.62 22.79 0.15 0.47 16 6 C -0.16 -7.29 8.15 22.11 0.18 -7.11 16 7 C -0.21 -10.21 9.74 22.48 0.22 -9.99 16 8 C 0.05 3.01 5.56 -21.28 -0.12 2.89 16 9 C -0.50 -27.32 9.04 23.40 0.21 -27.11 16 10 H 0.08 3.98 7.90 -2.91 -0.02 3.96 16 11 C 0.03 1.65 5.14 85.24 0.44 2.09 16 12 N -0.83 -44.67 10.98 21.82 0.24 -44.43 16 13 Si 0.98 38.87 29.59 68.60 2.03 40.90 16 14 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 15 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 16 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 17 C -0.15 -8.22 8.63 22.48 0.19 -8.03 16 18 C -0.13 -6.66 9.92 22.11 0.22 -6.44 16 19 C -0.09 -2.47 4.97 -20.09 -0.10 -2.56 16 20 C -0.11 -3.02 9.25 22.04 0.20 -2.82 16 21 C -0.11 -2.62 9.77 22.33 0.22 -2.40 16 22 C -0.07 -1.63 5.74 -21.30 -0.12 -1.76 16 23 C -0.12 -2.04 9.77 22.33 0.22 -1.82 16 24 C -0.12 -1.73 9.95 22.04 0.22 -1.51 16 25 C -0.12 -1.78 9.95 22.05 0.22 -1.56 16 26 C -0.12 -2.16 9.77 22.33 0.22 -1.94 16 27 C -0.07 -1.64 5.74 -21.30 -0.12 -1.77 16 28 C -0.10 -2.60 9.36 22.33 0.21 -2.39 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.75 6.91 -2.39 -0.02 1.74 16 32 H 0.13 4.76 5.41 -2.91 -0.02 4.75 16 33 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 34 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 35 H 0.11 6.11 6.21 -2.91 -0.02 6.10 16 36 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 37 H 0.12 3.50 7.58 -2.91 -0.02 3.48 16 38 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 40 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 41 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 42 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 43 H 0.14 2.96 8.04 -2.91 -0.02 2.94 16 Total: -1.00 -64.20 358.59 5.87 -58.33 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 1.02 Total: 32.71 kcal Atomic # 6 Polarization: -77.06 SS G_CDS: 3.39 Total: -73.67 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.24 Total: -44.43 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.80 Total: -13.84 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -64.20 5.87 -58.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.789 kcal (2) G-P(sol) polarization free energy of solvation -64.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds