Wall clock time and date at job start Tue Mar 31 2020 12:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47225 * 2 1 4 4 O 1.42904 * 109.46925 * 119.99854 * 2 1 3 5 5 C 1.35671 * 116.99703 * 274.59069 * 4 2 1 6 6 C 1.39319 * 119.81661 * 185.53740 * 5 4 2 7 7 C 1.36431 * 120.18608 * 180.26293 * 6 5 4 8 8 C 1.40837 * 119.80932 * 359.49896 * 7 6 5 9 9 C 1.41217 * 120.17742 * 180.28147 * 8 7 6 10 10 H 1.08006 * 119.99707 * 336.14454 * 9 8 7 11 11 C 1.39882 * 120.00192 * 156.15409 * 9 8 7 12 12 N 1.30881 * 120.00119 * 338.73567 * 11 9 8 13 13 Si 1.86799 * 120.00246 * 158.73661 * 11 9 8 14 14 H 1.48501 * 109.47214 * 94.98433 * 13 11 9 15 15 H 1.48502 * 109.47468 * 214.98649 * 13 11 9 16 16 H 1.48508 * 109.47013 * 334.98617 * 13 11 9 17 17 C 1.40827 * 119.64413 * 0.25094 * 8 7 6 18 18 C 1.36434 * 119.81008 * 0.02562 * 17 8 7 19 19 C 1.50697 * 109.47274 * 239.99781 * 2 1 3 20 20 C 1.39381 * 119.50804 * 280.00326 * 19 2 1 21 21 C 1.36091 * 120.99408 * 180.02562 * 20 19 2 22 22 C 1.40544 * 119.65138 * 359.97438 * 21 20 19 23 23 C 1.40545 * 121.28870 * 180.02562 * 22 21 20 24 24 C 1.36091 * 119.65138 * 179.97438 * 23 22 21 25 25 C 1.39374 * 120.99283 * 359.97438 * 24 23 22 26 26 C 1.36098 * 120.98701 * 0.02562 * 25 24 23 27 27 C 1.40542 * 119.65228 * 359.95562 * 26 25 24 28 28 C 1.36091 * 119.51026 * 99.72953 * 19 2 1 29 29 H 1.09003 * 109.47225 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47216 * 300.00126 * 1 2 3 31 31 H 1.09000 * 109.47006 * 60.00282 * 1 2 3 32 32 H 1.08006 * 119.90466 * 0.02562 * 6 5 4 33 33 H 1.07999 * 120.09244 * 179.77702 * 7 6 5 34 34 H 0.96992 * 120.00323 * 180.02562 * 12 11 9 35 35 H 1.08002 * 120.09683 * 180.02562 * 17 8 7 36 36 H 1.08003 * 119.91067 * 179.97438 * 18 17 8 37 37 H 1.08004 * 119.50299 * 359.97438 * 20 19 2 38 38 H 1.07996 * 120.17723 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.17082 * 359.95417 * 23 22 21 40 40 H 1.07997 * 119.50140 * 180.02562 * 24 23 22 41 41 H 1.08000 * 119.50700 * 179.97438 * 25 24 23 42 42 H 1.07995 * 120.17318 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.16771 * 359.97438 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1203 0.0635 2.3001 6 6 2.6867 -0.5022 3.4404 7 6 2.8002 0.2305 4.5856 8 6 2.3525 1.5656 4.6099 9 6 2.4717 2.3330 5.7894 10 1 2.5314 1.8417 6.7494 11 6 2.5122 3.7292 5.7144 12 7 2.8554 4.3147 4.5953 13 14 2.0764 4.7580 7.2113 14 1 3.3172 5.1150 7.9449 15 1 1.3849 5.9979 6.7757 16 1 1.1805 3.9791 8.1036 17 6 1.7860 2.1315 3.4514 18 6 1.6746 1.3833 2.3159 19 6 2.0323 -0.7104 -1.2304 20 6 2.0625 -2.1037 -1.2544 21 6 2.5108 -2.7762 -2.3494 22 6 2.9500 -2.0580 -3.4748 23 6 3.4191 -2.7173 -4.6239 24 6 3.8360 -1.9888 -5.6952 25 6 3.8049 -0.5956 -5.6716 26 6 3.3570 0.0768 -4.5763 27 6 2.9179 -0.6415 -3.4509 28 6 2.4445 0.0178 -2.3036 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.0334 -1.5249 3.4187 33 1 3.2362 -0.2107 5.4697 34 1 2.8839 5.2829 4.5434 35 1 1.4407 3.1547 3.4617 36 1 1.2400 1.8155 1.4267 37 1 1.7259 -2.6580 -0.3907 38 1 2.5288 -3.8560 -2.3535 39 1 3.4489 -3.7964 -4.6565 40 1 4.1957 -2.4979 -6.5771 41 1 4.1419 -0.0413 -6.5350 42 1 3.3390 1.1566 -4.5721 43 1 2.4109 1.0969 -2.2726 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225265099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:56 Heat of formation + Delta-G solvation = 18.168237 kcal Electronic energy + Delta-G solvation = -24612.082678 eV Core-core repulsion = 21165.541050 eV Total energy + Delta-G solvation = -3446.541629 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.51436 -39.04817 -37.11952 -35.99826 -33.48454 -32.94271 -31.82288 -29.87681 -29.50852 -29.04738 -28.57524 -25.10005 -23.88404 -23.34391 -22.01547 -21.90473 -20.99580 -20.02388 -17.45321 -17.37377 -17.22388 -16.66257 -16.04984 -15.27982 -14.84002 -14.73077 -14.53595 -13.99042 -13.85413 -13.62959 -13.62054 -13.39923 -13.03710 -12.82697 -12.57202 -12.27722 -12.10406 -11.95492 -11.76517 -11.56231 -11.29122 -11.16112 -11.04468 -10.95927 -10.93250 -10.62141 -10.49110 -10.05645 -9.93697 -9.78185 -9.34816 -8.97739 -8.56447 -7.93909 -7.64772 -7.03149 -6.75886 -4.24088 0.47336 0.95268 1.99783 2.76362 2.92036 2.96439 3.07565 3.11523 3.21988 3.93937 3.97288 4.13024 4.54058 4.59634 4.72196 4.79069 4.88071 5.01947 5.12021 5.26768 5.30410 5.38390 5.45297 5.50357 5.67313 5.69104 5.78786 5.88380 5.96535 6.08910 6.10992 6.16912 6.20540 6.27484 6.35478 6.37734 6.53690 6.59658 6.76085 6.77509 6.90742 6.95977 7.06441 7.27088 7.41810 7.55908 7.90586 7.99748 8.15116 8.44766 8.65130 8.89386 8.99439 10.19018 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025759 B = 0.002463 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.721720 B =11367.345541 C =11872.717325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.125 3.875 3 H 0.077 0.923 4 O -0.318 6.318 5 C -0.009 4.009 6 C -0.111 4.111 7 C -0.198 4.198 8 C 0.089 3.911 9 C -0.464 4.464 10 H 0.077 0.923 11 C 0.077 3.923 12 N -0.795 5.795 13 Si 0.903 3.097 14 H -0.271 1.271 15 H -0.276 1.276 16 H -0.260 1.260 17 C -0.137 4.137 18 C -0.172 4.172 19 C -0.065 4.065 20 C -0.083 4.083 21 C -0.115 4.115 22 C -0.052 4.052 23 C -0.107 4.107 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.103 4.103 27 C -0.051 4.051 28 C -0.101 4.101 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.279 0.721 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.126 0.874 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.388 -7.742 -17.068 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.068 3.932 3 H 0.094 0.906 4 O -0.234 6.234 5 C -0.052 4.052 6 C -0.130 4.130 7 C -0.218 4.218 8 C 0.087 3.913 9 C -0.494 4.494 10 H 0.095 0.905 11 C -0.140 4.140 12 N -0.421 5.421 13 Si 0.727 3.273 14 H -0.196 1.196 15 H -0.201 1.201 16 H -0.184 1.184 17 C -0.157 4.157 18 C -0.191 4.191 19 C -0.065 4.065 20 C -0.101 4.101 21 C -0.133 4.133 22 C -0.052 4.052 23 C -0.124 4.124 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.121 4.121 27 C -0.051 4.051 28 C -0.119 4.119 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.135 0.865 36 H 0.114 0.886 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.144 0.856 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.298 -7.701 -17.183 18.874 hybrid contribution -0.136 0.863 0.567 1.041 sum -1.434 -6.837 -16.616 18.025 Atomic orbital electron populations 1.22313 0.94997 1.02863 1.02596 1.20901 0.93692 0.95740 0.82862 0.90554 1.85855 1.83232 1.37858 1.16500 1.18519 1.08960 0.91468 0.86277 1.19612 1.02825 0.98686 0.91845 1.20574 1.08115 0.96428 0.96675 1.17581 0.89418 0.91182 0.93141 1.19452 1.45088 0.90702 0.94170 0.90466 1.25872 0.92220 0.98756 0.97161 1.69862 1.33208 1.11605 1.27417 0.86388 0.79607 0.79234 0.82029 1.19641 1.20095 1.18427 1.20870 1.02155 0.99779 0.92861 1.20620 1.05855 0.93761 0.98878 1.19540 0.98285 0.94134 0.94561 1.20782 0.97627 0.93777 0.97959 1.21009 0.99890 0.99614 0.92827 1.18122 0.99613 0.92663 0.94804 1.21017 0.98955 0.99668 0.92809 1.20810 1.00415 0.94174 0.98576 1.20809 1.00463 0.94459 0.98405 1.21043 0.98588 0.99757 0.92686 1.18017 0.99788 0.92674 0.94576 1.20846 0.98834 0.99788 0.92480 0.91888 0.91032 0.91932 0.88613 0.88283 0.90974 0.86476 0.88557 0.85209 0.85566 0.85755 0.86238 0.86176 0.85611 0.85399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.15 37.16 0.34 -2.13 16 2 C 0.13 2.06 2.40 -27.89 -0.07 1.99 16 3 H 0.08 1.30 6.07 -51.93 -0.32 0.98 16 4 O -0.32 -6.37 9.07 -18.71 -0.17 -6.54 16 5 C -0.01 -0.21 6.63 -38.78 -0.26 -0.47 16 6 C -0.11 -2.57 9.92 -39.83 -0.40 -2.97 16 7 C -0.20 -4.88 9.74 -39.25 -0.38 -5.27 16 8 C 0.09 2.37 5.57 -106.80 -0.60 1.77 16 9 C -0.46 -12.29 9.02 -37.84 -0.34 -12.63 16 10 H 0.08 1.96 7.93 -52.48 -0.42 1.55 16 11 C 0.08 1.94 5.06 -17.34 -0.09 1.85 16 12 N -0.80 -20.49 11.12 55.54 0.62 -19.88 16 13 Si 0.90 18.58 29.61 -169.99 -5.03 13.55 16 14 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 15 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 16 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 17 C -0.14 -3.53 8.66 -39.25 -0.34 -3.87 16 18 C -0.17 -3.98 8.19 -39.83 -0.33 -4.30 16 19 C -0.07 -0.96 4.94 -104.97 -0.52 -1.48 16 20 C -0.08 -1.16 9.25 -39.93 -0.37 -1.53 16 21 C -0.12 -1.40 9.77 -39.48 -0.39 -1.79 16 22 C -0.05 -0.65 5.74 -106.83 -0.61 -1.26 16 23 C -0.11 -1.09 9.77 -39.48 -0.39 -1.47 16 24 C -0.12 -1.12 9.95 -39.93 -0.40 -1.52 16 25 C -0.12 -1.16 9.95 -39.93 -0.40 -1.56 16 26 C -0.10 -1.11 9.77 -39.48 -0.39 -1.49 16 27 C -0.05 -0.65 5.74 -106.84 -0.61 -1.26 16 28 C -0.10 -1.36 9.35 -39.49 -0.37 -1.73 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.12 6.96 -51.93 -0.36 0.76 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 2.01 8.06 -52.48 -0.42 1.58 16 33 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 34 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 35 H 0.12 3.09 6.23 -52.49 -0.33 2.76 16 36 H 0.10 1.98 5.42 -52.48 -0.28 1.69 16 37 H 0.13 1.78 7.74 -52.48 -0.41 1.37 16 38 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.13 1.51 8.00 -52.49 -0.42 1.09 16 LS Contribution 359.02 15.07 5.41 5.41 Total: -1.00 -28.75 359.02 -11.53 -40.28 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.47 Total: 8.28 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: -6.89 Total: -41.11 kcal Atomic # 7 Polarization: -20.49 SS G_CDS: 0.62 Total: -19.88 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.17 Total: -6.54 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.75 -11.53 -40.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.452 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds