Wall clock time and date at job start Tue Mar 31 2020 12:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47225 * 2 1 4 4 O 1.42904 * 109.46925 * 119.99854 * 2 1 3 5 5 C 1.35671 * 116.99703 * 274.59069 * 4 2 1 6 6 C 1.39319 * 119.81661 * 185.53740 * 5 4 2 7 7 C 1.36431 * 120.18608 * 180.26293 * 6 5 4 8 8 C 1.40837 * 119.80932 * 359.49896 * 7 6 5 9 9 C 1.41217 * 120.17742 * 180.28147 * 8 7 6 10 10 H 1.08006 * 119.99707 * 336.14454 * 9 8 7 11 11 C 1.39882 * 120.00192 * 156.15409 * 9 8 7 12 12 N 1.30881 * 120.00119 * 338.73567 * 11 9 8 13 13 Si 1.86799 * 120.00246 * 158.73661 * 11 9 8 14 14 H 1.48501 * 109.47214 * 94.98433 * 13 11 9 15 15 H 1.48502 * 109.47468 * 214.98649 * 13 11 9 16 16 H 1.48508 * 109.47013 * 334.98617 * 13 11 9 17 17 C 1.40827 * 119.64413 * 0.25094 * 8 7 6 18 18 C 1.36434 * 119.81008 * 0.02562 * 17 8 7 19 19 C 1.50697 * 109.47274 * 239.99781 * 2 1 3 20 20 C 1.39381 * 119.50804 * 280.00326 * 19 2 1 21 21 C 1.36091 * 120.99408 * 180.02562 * 20 19 2 22 22 C 1.40544 * 119.65138 * 359.97438 * 21 20 19 23 23 C 1.40545 * 121.28870 * 180.02562 * 22 21 20 24 24 C 1.36091 * 119.65138 * 179.97438 * 23 22 21 25 25 C 1.39374 * 120.99283 * 359.97438 * 24 23 22 26 26 C 1.36098 * 120.98701 * 0.02562 * 25 24 23 27 27 C 1.40542 * 119.65228 * 359.95562 * 26 25 24 28 28 C 1.36091 * 119.51026 * 99.72953 * 19 2 1 29 29 H 1.09003 * 109.47225 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47216 * 300.00126 * 1 2 3 31 31 H 1.09000 * 109.47006 * 60.00282 * 1 2 3 32 32 H 1.08006 * 119.90466 * 0.02562 * 6 5 4 33 33 H 1.07999 * 120.09244 * 179.77702 * 7 6 5 34 34 H 0.96992 * 120.00323 * 180.02562 * 12 11 9 35 35 H 1.08002 * 120.09683 * 180.02562 * 17 8 7 36 36 H 1.08003 * 119.91067 * 179.97438 * 18 17 8 37 37 H 1.08004 * 119.50299 * 359.97438 * 20 19 2 38 38 H 1.07996 * 120.17723 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.17082 * 359.95417 * 23 22 21 40 40 H 1.07997 * 119.50140 * 180.02562 * 24 23 22 41 41 H 1.08000 * 119.50700 * 179.97438 * 25 24 23 42 42 H 1.07995 * 120.17318 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.16771 * 359.97438 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1203 0.0635 2.3001 6 6 2.6867 -0.5022 3.4404 7 6 2.8002 0.2305 4.5856 8 6 2.3525 1.5656 4.6099 9 6 2.4717 2.3330 5.7894 10 1 2.5314 1.8417 6.7494 11 6 2.5122 3.7292 5.7144 12 7 2.8554 4.3147 4.5953 13 14 2.0764 4.7580 7.2113 14 1 3.3172 5.1150 7.9449 15 1 1.3849 5.9979 6.7757 16 1 1.1805 3.9791 8.1036 17 6 1.7860 2.1315 3.4514 18 6 1.6746 1.3833 2.3159 19 6 2.0323 -0.7104 -1.2304 20 6 2.0625 -2.1037 -1.2544 21 6 2.5108 -2.7762 -2.3494 22 6 2.9500 -2.0580 -3.4748 23 6 3.4191 -2.7173 -4.6239 24 6 3.8360 -1.9888 -5.6952 25 6 3.8049 -0.5956 -5.6716 26 6 3.3570 0.0768 -4.5763 27 6 2.9179 -0.6415 -3.4509 28 6 2.4445 0.0178 -2.3036 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.0334 -1.5249 3.4187 33 1 3.2362 -0.2107 5.4697 34 1 2.8839 5.2829 4.5434 35 1 1.4407 3.1547 3.4617 36 1 1.2400 1.8155 1.4267 37 1 1.7259 -2.6580 -0.3907 38 1 2.5288 -3.8560 -2.3535 39 1 3.4489 -3.7964 -4.6565 40 1 4.1957 -2.4979 -6.5771 41 1 4.1419 -0.0413 -6.5350 42 1 3.3390 1.1566 -4.5721 43 1 2.4109 1.0969 -2.2726 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225265099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:55 Heat of formation + Delta-G solvation = 7.344508 kcal Electronic energy + Delta-G solvation = -24612.552030 eV Core-core repulsion = 21165.541050 eV Total energy + Delta-G solvation = -3447.010981 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.49416 -40.57457 -38.59539 -37.26661 -35.27354 -33.96584 -32.95580 -31.56666 -30.87171 -30.55569 -29.62916 -26.89353 -25.07183 -24.25978 -23.40648 -22.94619 -22.68924 -21.51846 -19.28459 -18.78450 -18.24468 -17.84400 -17.08888 -16.92640 -16.13829 -15.97594 -15.77968 -15.61269 -15.09013 -14.90022 -14.66278 -14.36048 -14.30178 -14.20076 -14.05688 -13.71372 -13.65124 -13.25648 -13.17968 -12.93078 -12.79032 -12.68764 -12.33923 -12.24904 -12.10231 -11.86309 -11.71541 -11.65469 -11.50413 -11.16871 -10.90393 -10.81540 -9.55565 -9.48468 -8.92387 -8.81150 -8.62480 -6.20893 -0.39885 0.04721 0.94368 1.04630 1.11655 1.39117 1.48776 1.55811 2.01999 2.22269 2.59325 2.71719 3.17957 3.61332 3.70178 3.71443 3.97174 4.00453 4.06437 4.18780 4.26049 4.31233 4.32495 4.41752 4.46900 4.48242 4.57840 4.65474 4.80119 4.88839 4.91325 5.00785 5.03524 5.11886 5.16720 5.21697 5.30594 5.34598 5.36911 5.48817 5.58028 5.63981 5.66196 5.69959 5.90679 5.98527 6.06019 6.10497 6.24162 6.56158 6.80309 6.94836 7.10976 8.34621 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025759 B = 0.002463 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.721720 B =11367.345541 C =11872.717325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.122 3.878 3 H 0.067 0.933 4 O -0.323 6.323 5 C 0.001 3.999 6 C -0.120 4.120 7 C -0.208 4.208 8 C 0.056 3.944 9 C -0.501 4.501 10 H 0.076 0.924 11 C 0.037 3.963 12 N -0.827 5.827 13 Si 0.978 3.022 14 H -0.263 1.263 15 H -0.266 1.266 16 H -0.259 1.259 17 C -0.158 4.158 18 C -0.172 4.172 19 C -0.085 4.085 20 C -0.106 4.106 21 C -0.108 4.108 22 C -0.070 4.070 23 C -0.114 4.114 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.119 4.119 27 C -0.070 4.070 28 C -0.106 4.106 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.288 0.712 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.151 0.849 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.139 0.861 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.121 -8.381 -19.303 21.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.066 3.934 3 H 0.085 0.915 4 O -0.239 6.239 5 C -0.042 4.042 6 C -0.139 4.139 7 C -0.227 4.227 8 C 0.054 3.946 9 C -0.530 4.530 10 H 0.094 0.906 11 C -0.178 4.178 12 N -0.454 5.454 13 Si 0.799 3.201 14 H -0.188 1.188 15 H -0.191 1.191 16 H -0.183 1.183 17 C -0.177 4.177 18 C -0.191 4.191 19 C -0.085 4.085 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.070 4.070 23 C -0.132 4.132 24 C -0.137 4.137 25 C -0.137 4.137 26 C -0.137 4.137 27 C -0.070 4.070 28 C -0.124 4.124 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.121 0.879 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.169 0.831 39 H 0.166 0.834 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.157 0.843 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.031 -8.355 -19.439 21.183 hybrid contribution -0.154 0.938 0.961 1.352 sum -1.185 -7.417 -18.478 19.946 Atomic orbital electron populations 1.22256 0.93568 1.03337 1.02944 1.21109 0.94870 0.95277 0.82191 0.91494 1.85856 1.83259 1.38104 1.16669 1.18631 1.07203 0.91243 0.87166 1.19889 1.02688 0.99691 0.91610 1.20770 1.08156 0.96115 0.97689 1.17936 0.90485 0.92313 0.93833 1.19693 1.47216 0.91996 0.94143 0.90620 1.26715 0.91352 0.99391 1.00342 1.69906 1.33650 1.12360 1.29437 0.85255 0.79443 0.77435 0.77953 1.18784 1.19059 1.18317 1.20846 1.03465 0.99601 0.93829 1.20803 1.05439 0.93953 0.98888 1.19426 1.00271 0.94660 0.94111 1.20783 0.99401 0.93512 0.98705 1.21281 0.98390 1.00852 0.92086 1.18440 1.00052 0.92784 0.95758 1.21331 0.98591 1.01070 0.92216 1.21248 0.98960 0.94255 0.99219 1.21227 0.98801 0.94993 0.98639 1.21284 0.99134 1.00676 0.92636 1.18273 1.00319 0.93351 0.95020 1.20996 0.98571 1.00271 0.92589 0.91364 0.92541 0.89603 0.86397 0.87340 0.90188 0.87858 0.86432 0.85823 0.83108 0.83411 0.83185 0.83425 0.84288 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.70 9.15 71.98 0.66 -4.05 16 2 C 0.12 4.03 2.40 29.85 0.07 4.10 16 3 H 0.07 2.31 6.07 -2.39 -0.01 2.30 16 4 O -0.32 -12.99 9.07 -89.88 -0.81 -13.80 16 5 C 0.00 0.06 6.63 22.79 0.15 0.21 16 6 C -0.12 -5.62 9.92 22.11 0.22 -5.40 16 7 C -0.21 -10.50 9.74 22.48 0.22 -10.28 16 8 C 0.06 3.11 5.57 -21.28 -0.12 2.99 16 9 C -0.50 -27.41 9.02 23.40 0.21 -27.20 16 10 H 0.08 3.99 7.93 -2.91 -0.02 3.97 16 11 C 0.04 1.87 5.06 85.23 0.43 2.30 16 12 N -0.83 -43.71 11.12 21.82 0.24 -43.47 16 13 Si 0.98 38.53 29.61 68.60 2.03 40.56 16 14 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 15 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 16 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 17 C -0.16 -8.43 8.66 22.48 0.19 -8.23 16 18 C -0.17 -8.14 8.19 22.11 0.18 -7.95 16 19 C -0.08 -2.49 4.94 -20.09 -0.10 -2.59 16 20 C -0.11 -2.92 9.25 22.05 0.20 -2.71 16 21 C -0.11 -2.50 9.77 22.33 0.22 -2.28 16 22 C -0.07 -1.63 5.74 -21.30 -0.12 -1.75 16 23 C -0.11 -1.99 9.77 22.33 0.22 -1.77 16 24 C -0.12 -1.75 9.95 22.04 0.22 -1.53 16 25 C -0.12 -1.85 9.95 22.05 0.22 -1.63 16 26 C -0.12 -2.34 9.77 22.33 0.22 -2.12 16 27 C -0.07 -1.71 5.74 -21.30 -0.12 -1.83 16 28 C -0.11 -2.83 9.35 22.33 0.21 -2.62 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.78 6.96 -2.39 -0.02 1.76 16 31 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 33 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 34 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 35 H 0.10 5.71 6.23 -2.91 -0.02 5.69 16 36 H 0.12 4.91 5.42 -2.91 -0.02 4.90 16 37 H 0.12 3.43 7.74 -2.91 -0.02 3.41 16 38 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 39 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 40 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 41 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 42 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 43 H 0.14 3.19 8.00 -2.91 -0.02 3.17 16 Total: -1.00 -63.67 359.02 5.86 -57.81 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: 1.01 Total: 33.25 kcal Atomic # 6 Polarization: -77.74 SS G_CDS: 3.38 Total: -74.36 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.24 Total: -43.47 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.81 Total: -13.80 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -63.67 5.86 -57.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.155 kcal (2) G-P(sol) polarization free energy of solvation -63.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds