Wall clock time and date at job start Tue Mar 31 2020 13:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.45199 * 109.47410 * 2 1 4 4 C 1.34224 * 117.00101 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00524 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99920 * 180.02562 * 4 3 2 7 7 C 1.53006 * 109.47148 * 180.02562 * 6 4 3 8 8 H 1.08993 * 109.46955 * 55.00096 * 7 6 4 9 9 C 1.50698 * 109.47184 * 175.00254 * 7 6 4 10 10 H 1.08003 * 120.00057 * 240.00090 * 9 7 6 11 11 C 1.37876 * 120.00356 * 59.99290 * 9 7 6 12 12 N 1.31519 * 119.99989 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 120.00260 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46997 * 90.00238 * 13 11 9 15 15 H 1.48501 * 109.47418 * 210.00367 * 13 11 9 16 16 H 1.48507 * 109.47103 * 330.00231 * 13 11 9 17 17 O 1.42906 * 109.46752 * 294.99678 * 7 6 4 18 18 C 1.35479 * 116.99407 * 150.00035 * 17 7 6 19 19 N 1.32197 * 119.80452 * 0.02562 * 18 17 7 20 20 C 1.31912 * 121.80541 * 180.02562 * 19 18 17 21 21 C 1.50699 * 119.40264 * 180.02562 * 20 19 18 22 22 C 1.38315 * 121.18944 * 359.97438 * 20 19 18 23 23 C 1.38369 * 119.46121 * 359.97438 * 22 20 19 24 24 C 1.50698 * 120.82856 * 180.02562 * 23 22 20 25 25 C 1.39990 * 118.34308 * 359.73606 * 23 22 20 26 26 C 1.43204 * 120.59912 * 180.28572 * 25 23 22 27 27 N 6.69394 * 135.21110 * 75.53926 * 2 1 3 28 28 H 1.09000 * 109.47310 * 300.00384 * 1 2 3 29 29 H 1.09000 * 109.47003 * 59.99855 * 1 2 3 30 30 H 1.08995 * 109.47751 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47310 * 239.99616 * 2 1 3 32 32 H 1.09000 * 109.47003 * 120.00145 * 2 1 3 33 33 H 1.09000 * 109.47293 * 59.99876 * 6 4 3 34 34 H 1.09007 * 109.47327 * 299.99910 * 6 4 3 35 35 H 0.96996 * 119.99885 * 179.97438 * 12 11 9 36 36 H 1.09005 * 109.47041 * 89.99402 * 21 20 19 37 37 H 1.08998 * 109.47162 * 210.00146 * 21 20 19 38 38 H 1.09000 * 109.47128 * 330.00021 * 21 20 19 39 39 H 1.08007 * 120.27169 * 179.97438 * 22 20 19 40 40 H 1.09002 * 109.46875 * 90.00367 * 24 23 22 41 41 H 1.08994 * 109.47567 * 210.00298 * 24 23 22 42 42 H 1.09003 * 109.47330 * 330.00662 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0012 7 6 5.4487 2.8572 0.0010 8 1 5.7805 2.2500 -0.8410 9 6 6.0244 4.2445 -0.1221 10 1 6.6592 4.4933 -0.9597 11 6 5.7408 5.1961 0.8344 12 7 4.9681 4.8930 1.8546 13 14 6.4539 6.9158 0.6814 14 1 5.5188 7.7724 -0.0913 15 1 6.6496 7.4929 2.0356 16 1 7.7602 6.8492 -0.0219 17 8 5.8945 2.2632 1.2219 18 6 7.0498 1.5569 1.1761 19 7 7.7069 1.4454 0.0345 20 6 8.8347 0.7670 -0.0551 21 6 9.5394 0.6754 -1.3840 22 6 9.3826 0.1392 1.0489 23 6 8.7373 0.2240 2.2700 24 6 9.3071 -0.4476 3.4928 25 6 7.5452 0.9543 2.3424 26 6 6.8407 1.0786 3.5830 27 7 6.2806 1.1776 4.5665 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 3.5844 3.4693 0.8912 34 1 3.5851 3.4698 -0.8888 35 1 4.7688 5.5624 2.5277 36 1 10.2393 1.5053 -1.4821 37 1 10.0831 -0.2675 -1.4427 38 1 8.8054 0.7222 -2.1884 39 1 10.3066 -0.4127 0.9586 40 1 9.9745 0.2427 4.0087 41 1 8.4953 -0.7355 4.1608 42 1 9.8636 -1.3357 3.1936 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226091379.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:00 Heat of formation + Delta-G solvation = -72.682038 kcal Electronic energy + Delta-G solvation = -27074.891246 eV Core-core repulsion = 23213.560790 eV Total energy + Delta-G solvation = -3861.330455 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.19996 -39.72108 -37.39879 -36.00465 -35.89605 -33.62860 -33.41295 -31.61008 -31.36071 -30.09525 -28.17121 -27.19689 -26.24193 -23.40806 -22.68891 -22.01631 -20.99061 -19.88161 -18.26918 -17.63580 -17.05076 -16.46612 -16.10833 -15.83352 -15.43569 -14.87195 -14.60279 -14.13447 -13.87608 -13.46491 -13.37194 -13.25664 -13.19822 -12.73704 -12.70661 -12.52427 -12.45702 -12.28678 -12.15960 -11.96821 -11.86597 -11.76143 -11.53011 -11.32533 -11.27298 -11.03988 -11.01676 -10.82488 -10.49313 -10.13988 -9.73623 -9.62500 -9.29093 -8.99348 -8.90998 -8.72554 -7.61958 -6.23882 -4.42332 1.18813 1.85045 3.00327 3.18151 3.27650 3.29794 3.33089 3.34988 3.61239 4.03235 4.25438 4.44335 4.47123 4.78661 4.90517 5.06935 5.09158 5.15777 5.34275 5.39083 5.47644 5.48056 5.55988 5.61390 5.73703 5.83051 5.86864 5.90484 5.92474 5.99550 6.08326 6.23550 6.29035 6.36357 6.49132 6.63223 6.68463 6.96951 7.04673 7.30508 7.68752 7.93210 8.16451 8.34152 8.49345 8.57553 8.78144 9.34007 10.77823 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.007988 B = 0.006091 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3504.539121 B = 4595.902503 C = 6198.957749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.456 3.544 5 O -0.516 6.516 6 C -0.105 4.105 7 C 0.225 3.775 8 H 0.057 0.943 9 C -0.544 4.544 10 H 0.071 0.929 11 C 0.080 3.920 12 N -0.860 5.860 13 Si 0.896 3.104 14 H -0.276 1.276 15 H -0.284 1.284 16 H -0.271 1.271 17 O -0.266 6.266 18 C 0.423 3.577 19 N -0.530 5.530 20 C 0.202 3.798 21 C -0.105 4.105 22 C -0.248 4.248 23 C 0.038 3.962 24 C -0.118 4.118 25 C -0.147 4.147 26 C 0.285 3.715 27 N -0.439 5.439 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.139 0.861 34 H 0.105 0.895 35 H 0.268 0.732 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.134 0.866 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.130 -9.444 -4.378 10.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.301 3.699 5 O -0.404 6.404 6 C -0.143 4.143 7 C 0.171 3.829 8 H 0.075 0.925 9 C -0.581 4.581 10 H 0.090 0.910 11 C -0.127 4.127 12 N -0.495 5.495 13 Si 0.723 3.277 14 H -0.202 1.202 15 H -0.210 1.210 16 H -0.195 1.195 17 O -0.168 6.168 18 C 0.240 3.760 19 N -0.256 5.256 20 C 0.061 3.939 21 C -0.163 4.163 22 C -0.269 4.269 23 C 0.028 3.972 24 C -0.175 4.175 25 C -0.154 4.154 26 C -0.029 4.029 27 N -0.116 5.116 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.156 0.844 34 H 0.123 0.877 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.152 0.848 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.753 -9.029 -3.199 9.738 hybrid contribution 0.824 0.503 0.220 0.990 sum 2.577 -8.527 -2.979 9.393 Atomic orbital electron populations 1.21774 0.93276 1.02330 1.03337 1.22853 0.94878 0.81775 1.02009 1.86574 1.26108 1.30999 1.84691 1.24915 0.79535 0.94318 0.71145 1.90590 1.60210 1.43646 1.45912 1.21929 0.96860 0.88184 1.07323 1.19877 0.87943 0.93016 0.82023 0.92474 1.21350 1.32337 0.94174 1.10279 0.91045 1.25134 0.93902 0.99156 0.94518 1.69857 1.34327 1.34562 1.10783 0.86518 0.79845 0.83649 0.77654 1.20155 1.21004 1.19547 1.86482 1.31386 1.58762 1.40191 1.19797 0.86028 0.83481 0.86656 1.67431 1.10081 1.21825 1.26245 1.21158 0.89217 0.88030 0.95475 1.20764 1.00050 1.02361 0.93093 1.21303 1.03763 1.09352 0.92476 1.19960 0.90394 0.91104 0.95727 1.20862 1.01434 1.00416 0.94780 1.15849 0.99195 1.12361 0.87988 1.25013 0.92830 0.92901 0.92192 1.81091 1.08696 1.09612 1.12194 0.91603 0.91685 0.90834 0.91841 0.91818 0.84354 0.87675 0.92189 0.90094 0.90817 0.90254 0.84772 0.90067 0.91278 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.29 37.15 0.38 -1.31 16 2 C 0.06 0.90 6.19 37.15 0.23 1.13 16 3 O -0.37 -6.93 10.22 -39.24 -0.40 -7.34 16 4 C 0.46 9.89 7.84 36.01 0.28 10.17 16 5 O -0.52 -12.13 15.17 -24.05 -0.36 -12.50 16 6 C -0.11 -2.39 5.22 -27.88 -0.15 -2.53 16 7 C 0.23 5.54 1.59 -27.88 -0.04 5.50 16 8 H 0.06 1.41 6.80 -51.93 -0.35 1.06 16 9 C -0.54 -14.04 8.90 -34.44 -0.31 -14.35 16 10 H 0.07 1.83 7.81 -52.48 -0.41 1.42 16 11 C 0.08 2.07 5.24 -17.82 -0.09 1.98 16 12 N -0.86 -23.20 10.93 55.43 0.61 -22.59 16 13 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 14 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 O -0.27 -6.85 7.83 -32.58 -0.25 -7.11 16 18 C 0.42 9.73 7.46 -16.61 -0.12 9.60 16 19 N -0.53 -11.10 8.55 -9.20 -0.08 -11.18 16 20 C 0.20 3.30 6.78 -82.53 -0.56 2.74 16 21 C -0.11 -1.26 10.16 36.00 0.37 -0.89 16 22 C -0.25 -3.53 9.41 -39.51 -0.37 -3.90 16 23 C 0.04 0.60 5.95 -103.92 -0.62 -0.02 16 24 C -0.12 -1.42 9.67 36.00 0.35 -1.07 16 25 C -0.15 -3.00 5.77 -106.53 -0.61 -3.61 16 26 C 0.29 6.23 13.52 -22.47 -0.30 5.92 16 27 N -0.44 -10.03 18.54 41.84 0.78 -9.25 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 32 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 33 H 0.14 3.43 6.22 -51.93 -0.32 3.11 16 34 H 0.11 2.15 8.14 -51.93 -0.42 1.72 16 35 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.65 8.07 -51.93 -0.42 0.24 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.13 1.39 8.06 -52.48 -0.42 0.96 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.89 7.20 -51.93 -0.37 0.52 16 42 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -31.54 369.91 -6.40 -37.94 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.66 Total: 1.88 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -1.57 Total: 9.35 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 1.30 Total: -43.02 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -1.02 Total: -26.94 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.54 -6.40 -37.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226091379.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.744 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds