Wall clock time and date at job start Tue Mar 31 2020 13:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.45199 * 109.47410 * 2 1 4 4 C 1.34224 * 117.00101 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00524 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99920 * 180.02562 * 4 3 2 7 7 C 1.53006 * 109.47148 * 180.02562 * 6 4 3 8 8 H 1.08993 * 109.46955 * 55.00096 * 7 6 4 9 9 C 1.50698 * 109.47184 * 175.00254 * 7 6 4 10 10 H 1.08003 * 120.00057 * 240.00090 * 9 7 6 11 11 C 1.37876 * 120.00356 * 59.99290 * 9 7 6 12 12 N 1.31519 * 119.99989 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 120.00260 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46997 * 90.00238 * 13 11 9 15 15 H 1.48501 * 109.47418 * 210.00367 * 13 11 9 16 16 H 1.48507 * 109.47103 * 330.00231 * 13 11 9 17 17 O 1.42906 * 109.46752 * 294.99678 * 7 6 4 18 18 C 1.35479 * 116.99407 * 150.00035 * 17 7 6 19 19 N 1.32197 * 119.80452 * 0.02562 * 18 17 7 20 20 C 1.31912 * 121.80541 * 180.02562 * 19 18 17 21 21 C 1.50699 * 119.40264 * 180.02562 * 20 19 18 22 22 C 1.38315 * 121.18944 * 359.97438 * 20 19 18 23 23 C 1.38369 * 119.46121 * 359.97438 * 22 20 19 24 24 C 1.50698 * 120.82856 * 180.02562 * 23 22 20 25 25 C 1.39990 * 118.34308 * 359.73606 * 23 22 20 26 26 C 1.43204 * 120.59912 * 180.28572 * 25 23 22 27 27 N 6.69394 * 135.21110 * 75.53926 * 2 1 3 28 28 H 1.09000 * 109.47310 * 300.00384 * 1 2 3 29 29 H 1.09000 * 109.47003 * 59.99855 * 1 2 3 30 30 H 1.08995 * 109.47751 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47310 * 239.99616 * 2 1 3 32 32 H 1.09000 * 109.47003 * 120.00145 * 2 1 3 33 33 H 1.09000 * 109.47293 * 59.99876 * 6 4 3 34 34 H 1.09007 * 109.47327 * 299.99910 * 6 4 3 35 35 H 0.96996 * 119.99885 * 179.97438 * 12 11 9 36 36 H 1.09005 * 109.47041 * 89.99402 * 21 20 19 37 37 H 1.08998 * 109.47162 * 210.00146 * 21 20 19 38 38 H 1.09000 * 109.47128 * 330.00021 * 21 20 19 39 39 H 1.08007 * 120.27169 * 179.97438 * 22 20 19 40 40 H 1.09002 * 109.46875 * 90.00367 * 24 23 22 41 41 H 1.08994 * 109.47567 * 210.00298 * 24 23 22 42 42 H 1.09003 * 109.47330 * 330.00662 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0012 7 6 5.4487 2.8572 0.0010 8 1 5.7805 2.2500 -0.8410 9 6 6.0244 4.2445 -0.1221 10 1 6.6592 4.4933 -0.9597 11 6 5.7408 5.1961 0.8344 12 7 4.9681 4.8930 1.8546 13 14 6.4539 6.9158 0.6814 14 1 5.5188 7.7724 -0.0913 15 1 6.6496 7.4929 2.0356 16 1 7.7602 6.8492 -0.0219 17 8 5.8945 2.2632 1.2219 18 6 7.0498 1.5569 1.1761 19 7 7.7069 1.4454 0.0345 20 6 8.8347 0.7670 -0.0551 21 6 9.5394 0.6754 -1.3840 22 6 9.3826 0.1392 1.0489 23 6 8.7373 0.2240 2.2700 24 6 9.3071 -0.4476 3.4928 25 6 7.5452 0.9543 2.3424 26 6 6.8407 1.0786 3.5830 27 7 6.2806 1.1776 4.5665 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 3.5844 3.4693 0.8912 34 1 3.5851 3.4698 -0.8888 35 1 4.7688 5.5624 2.5277 36 1 10.2393 1.5053 -1.4821 37 1 10.0831 -0.2675 -1.4427 38 1 8.8054 0.7222 -2.1884 39 1 10.3066 -0.4127 0.9586 40 1 9.9745 0.2427 4.0087 41 1 8.4953 -0.7355 4.1608 42 1 9.8636 -1.3357 3.1936 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226091379.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:59 Heat of formation + Delta-G solvation = -91.572704 kcal Electronic energy + Delta-G solvation = -27075.710406 eV Core-core repulsion = 23213.560790 eV Total energy + Delta-G solvation = -3862.149616 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.71498 -41.31458 -39.04049 -37.65157 -37.52140 -35.29132 -34.92436 -33.09074 -32.66178 -31.71862 -29.47018 -28.26169 -28.12051 -24.96208 -24.07095 -23.47446 -22.38349 -21.55011 -19.78510 -19.35208 -18.73235 -17.95540 -17.70391 -17.46001 -17.13697 -16.55450 -16.24158 -15.43160 -15.26085 -14.97066 -14.86094 -14.62526 -14.49179 -14.06676 -14.01043 -13.94598 -13.84276 -13.70063 -13.56346 -13.36744 -13.22115 -13.01995 -12.92134 -12.83777 -12.65611 -12.61225 -12.54233 -12.49917 -12.18411 -11.56167 -11.51043 -11.42642 -11.02118 -10.73021 -10.39201 -10.34394 -9.14061 -8.19801 -6.44848 -0.21611 0.49816 1.26587 1.39276 1.41963 1.51491 1.66179 1.79644 2.01636 2.36614 2.45955 2.95413 2.98450 3.14948 3.52758 3.73359 3.91388 3.95929 4.05357 4.09895 4.27642 4.30049 4.47110 4.49108 4.60591 4.70707 4.73216 4.74671 4.84201 4.88952 4.92984 5.00556 5.08281 5.08601 5.11467 5.26262 5.31686 5.35539 5.49296 5.67147 5.75251 6.00528 6.46487 6.54231 6.81220 6.89898 7.13325 7.35145 8.80448 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.007988 B = 0.006091 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3504.539121 B = 4595.902503 C = 6198.957749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.049 3.951 3 O -0.367 6.367 4 C 0.462 3.538 5 O -0.538 6.538 6 C -0.102 4.102 7 C 0.231 3.769 8 H 0.045 0.955 9 C -0.555 4.555 10 H 0.065 0.935 11 C 0.040 3.960 12 N -0.887 5.887 13 Si 0.955 3.045 14 H -0.263 1.263 15 H -0.289 1.289 16 H -0.269 1.269 17 O -0.298 6.298 18 C 0.388 3.612 19 N -0.561 5.561 20 C 0.188 3.812 21 C -0.102 4.102 22 C -0.224 4.224 23 C 0.045 3.955 24 C -0.116 4.116 25 C -0.179 4.179 26 C 0.294 3.706 27 N -0.474 5.474 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.265 0.735 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.066 0.934 39 H 0.190 0.810 40 H 0.096 0.904 41 H 0.054 0.946 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.160 -10.919 -5.382 13.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.284 6.284 4 C 0.308 3.692 5 O -0.428 6.428 6 C -0.140 4.140 7 C 0.177 3.823 8 H 0.063 0.937 9 C -0.592 4.592 10 H 0.083 0.917 11 C -0.164 4.164 12 N -0.523 5.523 13 Si 0.780 3.220 14 H -0.188 1.188 15 H -0.215 1.215 16 H -0.194 1.194 17 O -0.202 6.202 18 C 0.206 3.794 19 N -0.288 5.288 20 C 0.049 3.951 21 C -0.159 4.159 22 C -0.243 4.243 23 C 0.035 3.965 24 C -0.172 4.172 25 C -0.186 4.186 26 C -0.020 4.020 27 N -0.152 5.152 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.123 0.877 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.074 0.926 36 H 0.113 0.887 37 H 0.134 0.866 38 H 0.085 0.915 39 H 0.208 0.792 40 H 0.115 0.885 41 H 0.073 0.927 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.788 -10.522 -4.222 11.953 hybrid contribution 0.293 0.787 0.451 0.953 sum 4.081 -9.735 -3.771 11.209 Atomic orbital electron populations 1.21806 0.89817 1.04499 1.03697 1.23274 0.97544 0.79693 1.01959 1.86547 1.24294 1.33561 1.84025 1.24587 0.80386 0.93556 0.70720 1.90567 1.61001 1.44140 1.47059 1.21767 0.96284 0.88988 1.06918 1.19705 0.88680 0.92194 0.81769 0.93683 1.21502 1.32320 0.95177 1.10154 0.91666 1.25775 0.94168 1.02339 0.94126 1.70003 1.35593 1.35317 1.11413 0.85607 0.79352 0.79773 0.77268 1.18775 1.21548 1.19351 1.86392 1.33324 1.60287 1.40164 1.20124 0.86110 0.84878 0.88312 1.67418 1.12065 1.23550 1.25748 1.22087 0.87973 0.86737 0.98277 1.20919 0.99789 1.05100 0.90064 1.21887 1.04537 1.07330 0.90578 1.20504 0.88458 0.89438 0.98069 1.20991 1.01383 1.01940 0.92868 1.16206 1.01308 1.14524 0.86544 1.25434 0.92261 0.91948 0.92314 1.81058 1.09675 1.11089 1.13407 0.91760 0.90794 0.87697 0.91150 0.92712 0.86545 0.86149 0.92576 0.88704 0.86646 0.91457 0.79249 0.88520 0.92705 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 10.29 71.98 0.74 -2.22 16 2 C 0.05 1.48 6.19 71.98 0.45 1.92 16 3 O -0.37 -14.20 10.22 -51.36 -0.52 -14.72 16 4 C 0.46 20.87 7.84 71.24 0.56 21.42 16 5 O -0.54 -26.37 15.17 27.04 0.41 -25.96 16 6 C -0.10 -4.86 5.22 29.85 0.16 -4.70 16 7 C 0.23 11.92 1.59 29.85 0.05 11.97 16 8 H 0.05 2.36 6.80 -2.39 -0.02 2.34 16 9 C -0.55 -29.64 8.90 25.60 0.23 -29.42 16 10 H 0.07 3.45 7.81 -2.91 -0.02 3.43 16 11 C 0.04 2.13 5.24 84.65 0.44 2.57 16 12 N -0.89 -49.85 10.93 21.45 0.23 -49.61 16 13 Si 0.96 42.30 29.54 68.60 2.03 44.33 16 14 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 15 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 16 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 17 O -0.30 -16.16 7.83 -73.97 -0.58 -16.74 16 18 C 0.39 18.45 7.46 85.14 0.64 19.09 16 19 N -0.56 -23.81 8.55 -296.02 -2.53 -26.34 16 20 C 0.19 5.76 6.78 42.56 0.29 6.05 16 21 C -0.10 -2.10 10.16 71.24 0.72 -1.37 16 22 C -0.22 -5.47 9.41 22.32 0.21 -5.26 16 23 C 0.04 1.32 5.95 -19.41 -0.12 1.21 16 24 C -0.12 -2.39 9.67 71.24 0.69 -1.71 16 25 C -0.18 -7.42 5.77 -21.10 -0.12 -7.54 16 26 C 0.29 13.32 13.52 88.33 1.19 14.51 16 27 N -0.47 -22.59 18.54 19.01 0.35 -22.24 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 2.03 8.13 -2.39 -0.02 2.01 16 32 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 33 H 0.12 6.13 6.22 -2.39 -0.01 6.11 16 34 H 0.12 5.14 8.14 -2.38 -0.02 5.12 16 35 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.12 1.42 8.07 -2.39 -0.02 1.40 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.19 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.05 1.32 7.20 -2.39 -0.02 1.31 16 42 H 0.12 1.51 8.10 -2.39 -0.02 1.49 16 Total: -1.00 -74.45 369.91 6.56 -67.89 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 1.04 Total: 16.86 kcal Atomic # 6 Polarization: 20.40 SS G_CDS: 6.12 Total: 26.53 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -1.94 Total: -98.19 kcal Atomic # 8 Polarization: -56.73 SS G_CDS: -0.69 Total: -57.42 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -74.45 6.56 -67.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226091379.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.682 kcal (2) G-P(sol) polarization free energy of solvation -74.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds