Wall clock time and date at job start Tue Mar 31 2020 13:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45190 * 109.47700 * 2 1 4 4 C 1.34230 * 117.00427 * 179.97438 * 3 2 1 5 5 O 1.20819 * 119.99807 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00245 * 179.97438 * 4 3 2 7 7 C 1.52995 * 109.47481 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.46818 * 55.00081 * 7 6 4 9 9 C 1.50693 * 109.47553 * 174.99837 * 7 6 4 10 10 H 1.07996 * 120.00318 * 240.00141 * 9 7 6 11 11 C 1.37876 * 119.99663 * 60.00501 * 9 7 6 12 12 N 1.31511 * 120.00289 * 359.97438 * 11 9 7 13 13 Si 1.86810 * 119.99879 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47109 * 59.99816 * 13 11 9 15 15 H 1.48502 * 109.46652 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46947 * 299.99348 * 13 11 9 17 17 O 1.42898 * 109.47477 * 295.00543 * 7 6 4 18 18 C 1.35281 * 117.00500 * 149.99684 * 17 7 6 19 19 N 1.30753 * 125.03140 * 359.97438 * 18 17 7 20 20 C 1.35904 * 109.62395 * 180.02562 * 19 18 17 21 21 C 1.39697 * 133.44376 * 179.97438 * 20 19 18 22 22 C 1.37675 * 119.77500 * 180.02562 * 21 20 19 23 23 C 1.38724 * 120.49809 * 359.70861 * 22 21 20 24 24 C 1.50703 * 119.77832 * 180.27603 * 23 22 21 25 25 C 1.37929 * 120.43865 * 0.57019 * 23 22 21 26 26 C 1.38697 * 119.84157 * 359.44953 * 25 23 22 27 27 N 1.36390 * 125.03110 * 180.02562 * 18 17 7 28 28 H 0.96996 * 126.36393 * 359.97438 * 27 18 17 29 29 H 1.09002 * 109.46907 * 300.00466 * 1 2 3 30 30 H 1.09000 * 109.46598 * 59.99994 * 1 2 3 31 31 H 1.08997 * 109.47272 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46907 * 239.99534 * 2 1 3 33 33 H 1.09005 * 109.46991 * 120.00270 * 2 1 3 34 34 H 1.09003 * 109.47078 * 59.99951 * 6 4 3 35 35 H 1.09006 * 109.47019 * 300.00689 * 6 4 3 36 36 H 0.96997 * 120.00184 * 179.97438 * 12 11 9 37 37 H 1.08000 * 120.11615 * 0.04634 * 21 20 19 38 38 H 1.07997 * 119.74635 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.46835 * 270.28899 * 24 23 22 40 40 H 1.08998 * 109.47416 * 30.29091 * 24 23 22 41 41 H 1.09005 * 109.46712 * 150.29076 * 24 23 22 42 42 H 1.08002 * 120.08183 * 179.73393 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3688 0.0000 4 6 3.3449 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9372 0.0000 7 6 5.4488 2.8571 0.0001 8 1 5.7808 2.2491 -0.8415 9 6 6.0246 4.2441 -0.1243 10 1 6.6594 4.4921 -0.9620 11 6 5.7410 5.1965 0.8315 12 7 4.9676 4.8946 1.8514 13 14 6.4542 6.9161 0.6770 14 1 5.9904 7.5322 -0.5921 15 1 6.0015 7.7445 1.8233 16 1 7.9372 6.8387 0.6767 17 8 5.8947 2.2640 1.2213 18 6 7.0482 1.5587 1.1764 19 7 7.7783 1.3813 0.1063 20 6 8.8648 0.6256 0.4152 21 6 9.9447 0.1461 -0.3301 22 6 10.9139 -0.6157 0.2829 23 6 10.8295 -0.9060 1.6368 24 6 11.9028 -1.7361 2.2925 25 6 9.7668 -0.4449 2.3854 26 6 8.7811 0.3237 1.7843 27 7 7.6213 0.9266 2.2405 28 1 7.2798 0.9038 3.1481 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.5846 3.4699 0.8895 35 1 3.5853 3.4689 -0.8905 36 1 4.7684 5.5645 2.5240 37 1 10.0192 0.3725 -1.3835 38 1 11.7483 -0.9865 -0.2938 39 1 11.6352 -2.7909 2.2300 40 1 12.8521 -1.5712 1.7828 41 1 11.9973 -1.4466 3.3392 42 1 9.7047 -0.6779 3.4381 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226506014.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:12 Heat of formation + Delta-G solvation = -58.831597 kcal Electronic energy + Delta-G solvation = -26539.646240 eV Core-core repulsion = 22678.916385 eV Total energy + Delta-G solvation = -3860.729855 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.34353 -39.83321 -37.91403 -36.67214 -35.82887 -33.26159 -32.63305 -31.62869 -30.70683 -30.32478 -29.19154 -26.33266 -25.64726 -23.41282 -22.54265 -21.82284 -20.94015 -20.68007 -19.75331 -17.96527 -17.29033 -16.75756 -16.33338 -16.15536 -15.72806 -15.44180 -15.00051 -14.67156 -14.38561 -13.97122 -13.73409 -13.52289 -13.47429 -13.10788 -12.96523 -12.56253 -12.27010 -12.13304 -12.04632 -11.71316 -11.52042 -11.49402 -11.27859 -11.04744 -11.00692 -10.89579 -10.76411 -10.47789 -10.17736 -9.95040 -9.74710 -9.64835 -9.06063 -8.99945 -8.80183 -7.82499 -7.05211 -6.30910 -4.48107 1.55360 1.96915 2.92974 2.97230 3.18930 3.24232 3.26592 3.31928 3.63162 4.22187 4.40304 4.64480 4.90396 5.05777 5.07583 5.12456 5.17407 5.32226 5.35261 5.44194 5.46557 5.70946 5.73241 5.84235 5.86878 5.88373 5.92742 6.03774 6.04908 6.23095 6.26895 6.43806 6.57186 6.59607 6.82482 6.94658 6.96402 7.08652 7.22577 7.34748 7.60791 7.70771 7.88389 8.44320 8.46705 8.64943 8.90425 9.28528 10.70750 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009306 B = 0.004655 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.150663 B = 6013.999709 C = 8353.864844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.455 3.545 5 O -0.514 6.514 6 C -0.103 4.103 7 C 0.238 3.762 8 H 0.056 0.944 9 C -0.541 4.541 10 H 0.073 0.927 11 C 0.081 3.919 12 N -0.864 5.864 13 Si 0.900 3.100 14 H -0.271 1.271 15 H -0.285 1.285 16 H -0.274 1.274 17 O -0.278 6.278 18 C 0.523 3.477 19 N -0.543 5.543 20 C 0.086 3.914 21 C -0.084 4.084 22 C -0.125 4.125 23 C -0.105 4.105 24 C -0.102 4.102 25 C -0.103 4.103 26 C 0.035 3.965 27 N -0.607 5.607 28 H 0.418 0.582 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.140 0.860 35 H 0.108 0.892 36 H 0.268 0.732 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.911 -9.393 0.878 9.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.300 3.700 5 O -0.401 6.401 6 C -0.140 4.140 7 C 0.184 3.816 8 H 0.074 0.926 9 C -0.578 4.578 10 H 0.091 0.909 11 C -0.126 4.126 12 N -0.500 5.500 13 Si 0.726 3.274 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.199 1.199 17 O -0.179 6.179 18 C 0.221 3.779 19 N -0.284 5.284 20 C -0.033 4.033 21 C -0.104 4.104 22 C -0.146 4.146 23 C -0.106 4.106 24 C -0.159 4.159 25 C -0.124 4.124 26 C -0.073 4.073 27 N -0.229 5.229 28 H 0.256 0.744 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.158 0.842 35 H 0.126 0.874 36 H 0.078 0.922 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.554 -9.186 0.375 9.210 hybrid contribution 0.220 0.558 1.286 1.419 sum 0.773 -8.628 1.661 8.821 Atomic orbital electron populations 1.21778 0.93246 1.02347 1.03346 1.22858 0.94878 0.81747 1.02039 1.86571 1.26063 1.31016 1.84725 1.24893 0.79557 0.94297 0.71300 1.90618 1.60187 1.43598 1.45704 1.21897 0.96340 0.88293 1.07503 1.19893 0.87916 0.92702 0.81044 0.92613 1.21425 1.31932 0.94135 1.10281 0.90894 1.25131 0.93710 0.99313 0.94433 1.69839 1.34428 1.34803 1.10966 0.86521 0.79918 0.82973 0.77948 1.19596 1.20999 1.19886 1.86187 1.29870 1.60527 1.41272 1.21051 0.88043 0.87016 0.81780 1.70963 1.07136 1.25483 1.24777 1.18985 0.95226 0.98249 0.90797 1.20112 0.92344 0.98566 0.99363 1.20588 0.99244 1.00692 0.94035 1.19334 0.96256 1.01139 0.93919 1.20640 0.96502 0.98681 1.00028 1.19589 0.93434 1.00307 0.99042 1.18560 0.90184 1.02641 0.95882 1.42547 1.21162 1.47477 1.11739 0.74365 0.91618 0.91646 0.90828 0.91805 0.91845 0.84227 0.87375 0.92155 0.85812 0.86178 0.91839 0.91867 0.92166 0.86806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.29 37.16 0.38 -1.23 16 2 C 0.06 0.86 6.19 37.16 0.23 1.09 16 3 O -0.37 -6.68 10.22 -39.26 -0.40 -7.08 16 4 C 0.46 9.62 7.84 36.00 0.28 9.91 16 5 O -0.51 -12.06 15.17 -24.04 -0.36 -12.42 16 6 C -0.10 -2.27 5.22 -27.89 -0.15 -2.42 16 7 C 0.24 5.94 1.69 -27.89 -0.05 5.89 16 8 H 0.06 1.45 7.05 -51.93 -0.37 1.08 16 9 C -0.54 -14.16 8.90 -34.44 -0.31 -14.46 16 10 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 11 C 0.08 2.07 5.24 -17.82 -0.09 1.98 16 12 N -0.86 -22.36 10.93 55.43 0.61 -21.76 16 13 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 14 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 O -0.28 -7.09 8.46 -31.96 -0.27 -7.36 16 18 C 0.52 12.61 8.82 -88.92 -0.78 11.83 16 19 N -0.54 -13.27 10.11 -12.24 -0.12 -13.40 16 20 C 0.09 1.84 7.22 -84.68 -0.61 1.23 16 21 C -0.08 -1.48 10.10 -39.24 -0.40 -1.88 16 22 C -0.13 -1.83 9.66 -39.61 -0.38 -2.21 16 23 C -0.10 -1.48 5.88 -104.55 -0.62 -2.09 16 24 C -0.10 -1.04 10.00 36.01 0.36 -0.68 16 25 C -0.10 -1.61 9.70 -39.53 -0.38 -2.00 16 26 C 0.04 0.68 7.30 -83.87 -0.61 0.07 16 27 N -0.61 -12.27 6.26 -11.90 -0.07 -12.35 16 28 H 0.42 7.14 8.96 -40.82 -0.37 6.77 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.92 8.13 -51.93 -0.42 0.49 16 33 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 34 H 0.14 3.30 6.22 -51.93 -0.32 2.97 16 35 H 0.11 2.17 8.14 -51.93 -0.42 1.74 16 36 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 37 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 38 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 41 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 42 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 361.73 15.07 5.45 5.45 Total: -1.00 -30.90 361.73 -8.99 -39.89 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -5.67 Total: 8.91 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -3.12 Total: 5.03 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.41 Total: -47.50 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -1.04 Total: -26.86 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.90 -8.99 -39.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226506014.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.945 kcal (2) G-P(sol) polarization free energy of solvation -30.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds